genome.fa.s12.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  94  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30983919--30984080	75	2.1	77	82	3	195	29	13	8	48	1.71
30990854--30990905	24	2.2	24	89	0	77	36	3	9	50	1.54
30996010--30996079	25	2.8	25	95	0	122	22	21	21	34	1.97
30996704--30996739	15	2.3	16	90	4	56	61	2	19	16	1.47
31004315--31004362	21	2.3	21	85	0	60	47	0	2	50	1.12
31009256--31009283	6	4.7	6	100	0	56	71	14	0	14	1.15
31009248--31009297	18	2.7	18	78	6	55	74	12	4	10	1.21
31010984--31011384	87	4.6	87	99	0	775	26	22	26	24	2.00
31011386--31011713	128	2.6	128	93	0	557	33	18	23	24	1.97
31013622--31013669	21	2.3	21	85	0	60	47	0	2	50	1.12
31019383--31019417	10	3.4	10	84	7	52	51	0	0	48	1.00
31019807--31019848	20	2.1	20	86	0	57	40	7	0	52	1.29
31020506--31020559	4	13.5	4	88	0	81	48	25	1	24	1.61
31020996--31021032	2	18.5	2	100	0	74	51	0	48	0	1.00
31030413--31030479	33	2.0	34	85	2	91	31	22	20	25	1.98
31030451--31030506	28	2.0	28	100	0	112	28	21	25	25	1.99
31030424--31030506	28	2.7	30	85	9	98	27	22	24	25	2.00
31030619--31030686	26	2.6	26	81	6	84	33	23	20	22	1.97
31034795--31034891	22	4.5	22	74	14	76	28	5	25	40	1.77
31039109--31039159	17	3.1	17	74	23	54	7	25	0	66	1.18
31043496--31043544	23	2.1	23	81	7	55	4	20	2	73	1.10
31044088--31044263	50	3.5	49	76	4	174	22	18	23	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31044104--31044292	100	1.9	100	87	4	283	23	19	23	34	1.96
31044390--31044769	44	8.2	44	71	16	223	27	20	17	33	1.96
31044340--31044611	142	1.9	142	94	0	481	28	19	18	33	1.95
31044494--31044768	86	3.0	86	74	16	223	28	20	17	34	1.95
31044395--31044769	184	2.0	185	90	1	590	27	20	18	33	1.96
31044582--31044762	98	1.9	96	83	4	238	28	19	17	34	1.95
31044886--31045207	87	3.7	87	91	1	520	23	23	21	31	1.98
31045009--31045145	43	3.2	42	65	13	98	24	20	24	31	1.98
31044890--31045106	45	5.0	43	62	14	122	23	23	22	30	1.99
31047312--31047409	30	3.3	29	82	5	115	13	8	6	72	1.27
31055606--31055636	15	2.0	16	93	6	55	70	12	6	9	1.31
31061509--31062027	173	3.0	173	97	0	968	30	20	11	36	1.88
31076147--31076201	27	2.0	27	86	6	76	45	0	3	50	1.19
31081291--31081320	15	1.9	16	93	6	53	50	10	0	40	1.36
31081984--31082027	16	2.9	14	78	15	52	11	6	2	79	1.01
31083389--31083581	28	6.9	28	82	1	210	22	17	21	38	1.93
31083389--31083581	84	2.3	84	89	4	284	22	17	21	38	1.93
31083389--31083628	84	2.9	82	81	10	211	22	18	21	37	1.94
31083463--31083648	85	2.2	83	80	8	189	23	18	24	33	1.97
31084415--31084477	31	2.0	31	93	0	108	30	15	25	28	1.96
31084852--31084895	22	2.0	23	86	4	63	11	18	2	68	1.30
31087605--31087636	16	2.0	16	93	0	55	25	15	0	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31090565--31090602	19	2.0	19	85	10	51	23	39	0	36	1.55
31097097--31097139	22	2.0	22	81	9	52	30	23	4	41	1.74
31106747--31109550	646	4.3	647	95	0	4803	29	15	20	34	1.93
31129159--31129193	2	17.5	2	93	0	61	45	0	2	51	1.16
31132234--31132264	14	2.2	14	94	0	53	29	9	0	61	1.28
31136095--31136391	50	5.8	50	78	2	218	23	26	20	29	1.99
31136350--31136660	138	2.3	138	95	0	550	24	26	16	32	1.96
31140565--31140600	17	2.2	16	90	5	54	36	8	5	50	1.56
31140325--31140619	147	2.0	148	95	2	540	38	14	8	37	1.78
31143058--31143281	111	2.0	111	100	0	448	15	20	23	40	1.90
31153090--31153379	50	5.8	50	83	2	316	27	21	27	22	1.99
31158989--31159052	27	2.4	26	85	10	85	46	15	10	26	1.79
31158999--31159052	27	2.0	27	96	0	99	40	18	12	27	1.87
31162000--31162050	22	2.3	22	75	0	57	37	23	7	31	1.83
31162501--31162539	20	2.0	20	90	10	62	56	5	23	15	1.59
31169657--31169699	12	3.6	12	84	6	52	48	6	25	18	1.73
31169658--31169711	24	2.2	24	83	0	63	53	5	25	14	1.63
31178850--31178902	26	2.0	26	85	0	70	33	18	28	18	1.95
31178896--31178950	22	2.5	22	75	16	60	43	16	20	20	1.88
31178950--31179125	32	5.6	32	78	9	173	38	22	21	18	1.94
31179347--31179571	27	8.4	27	75	13	126	23	20	19	37	1.94
31197840--31197874	18	1.9	18	100	0	70	11	22	34	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31208097--31208219	20	6.2	20	85	3	149	41	21	26	11	1.86
31214687--31214748	9	6.9	9	73	14	56	75	1	3	19	1.02
31214685--31214734	13	3.7	14	84	7	68	76	0	2	22	0.89
31214687--31214748	18	3.4	19	86	6	76	75	1	3	19	1.02
31214685--31214734	14	3.6	13	81	10	55	76	0	2	22	0.89
31214705--31214756	18	3.3	15	80	17	61	76	1	5	15	1.05
31215838--31215884	22	2.2	20	85	14	60	36	2	17	44	1.60
31227724--31227753	12	2.4	13	94	5	53	20	6	6	66	1.38
31254575--31254616	4	10.5	4	100	0	84	0	23	0	76	0.79
31268158--31268237	38	2.1	38	97	0	151	27	3	10	58	1.47
31269187--31269225	18	2.2	17	86	13	53	33	0	20	46	1.51
31269452--31269588	23	6.0	23	85	3	177	19	19	27	33	1.96
31269454--31269595	69	2.1	69	89	0	212	20	18	27	33	1.96
31277876--31278466	43	13.6	43	77	5	429	20	16	23	39	1.92
31277890--31278466	86	6.6	86	78	6	534	20	16	23	39	1.92
31277876--31278466	129	4.5	129	79	4	513	20	16	23	39	1.92
31279773--31279914	20	7.1	20	69	3	106	14	30	17	37	1.90
31279761--31279973	40	5.3	40	87	1	275	14	29	18	37	1.90
31279919--31279998	20	4.0	19	77	6	70	13	27	18	40	1.89
31283592--31283634	15	2.5	17	78	21	54	4	20	4	69	1.25
31284428--31284565	62	2.2	62	79	9	149	42	18	7	30	1.79
31287985--31288067	42	2.0	42	97	0	157	32	18	9	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31292246--31292383	62	2.2	62	79	9	149	42	18	7	30	1.79
31295963--31296259	114	2.6	114	82	3	334	39	10	30	19	1.86
31305506--31305616	33	3.3	33	83	1	141	28	27	7	36	1.83
31327054--31327118	27	2.4	28	82	7	89	29	27	16	26	1.97
31332679--31332721	21	2.0	21	86	0	59	25	18	0	55	1.42
31334935--31334972	3	12.7	3	100	0	76	68	0	31	0	0.90
31335115--31335156	6	6.8	6	94	5	75	69	0	0	30	0.89
31355402--31355603	100	2.0	100	92	1	334	41	15	14	28	1.87
31356287--31356320	17	2.0	17	88	0	50	14	20	14	50	1.78
31358291--31358481	27	7.1	27	71	10	122	37	18	21	21	1.94
31358522--31358777	32	8.0	32	75	5	194	21	20	20	36	1.95
31358536--31358762	96	2.4	96	82	1	267	21	20	21	36	1.96
31358790--31358843	22	2.5	22	75	6	56	18	24	14	42	1.88
31366818--31367059	27	9.0	27	80	5	233	40	21	18	19	1.91
31366818--31367059	54	4.5	54	81	5	260	40	21	18	19	1.91
31366857--31367144	27	10.7	27	79	8	230	37	20	21	20	1.94
31367207--31367265	24	2.5	24	78	10	68	23	6	23	45	1.76
31367393--31367467	38	2.0	38	92	5	125	20	25	18	36	1.95
31367610--31367662	26	2.0	26	85	0	70	18	30	20	30	1.97
31368550--31368624	23	3.3	22	83	7	96	18	29	30	21	1.97
31368757--31368897	27	5.2	27	81	3	167	34	14	13	37	1.86
31368727--31368907	54	3.4	54	82	9	219	33	16	13	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31369105--31369147	23	1.9	23	90	4	70	18	4	51	25	1.66
31369185--31369248	34	1.9	32	90	6	101	29	23	26	20	1.99
31372086--31372175	24	3.8	24	89	0	135	16	14	26	42	1.87
31379316--31379393	20	3.9	19	75	12	77	39	15	30	14	1.87
31386178--31386252	23	3.3	23	88	0	105	41	22	21	14	1.89
31389350--31389578	109	2.1	109	96	0	422	43	9	12	34	1.75
31391930--31391974	22	2.0	22	86	8	63	31	11	4	53	1.56
31400273--31400308	18	2.0	18	88	0	54	16	44	27	11	1.82
31401976--31402009	15	2.2	16	89	5	52	20	11	0	67	1.21
31412897--31412987	28	3.2	29	70	4	78	32	13	26	27	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128