genome.fa.s12.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  116  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38588765--38588858	44	2.1	44	84	0	116	29	17	23	29	1.97
38588870--38589220	100	3.5	99	82	3	436	30	21	21	25	1.98
38588870--38589213	50	6.9	50	68	2	179	30	21	21	25	1.98
38590894--38590956	32	2.0	32	96	3	119	31	9	15	42	1.79
38594254--38594282	14	2.0	15	93	6	51	13	0	10	75	1.04
38607849--38607899	4	12.8	4	95	0	84	45	25	3	25	1.71
38608195--38608243	24	2.0	24	96	0	89	53	4	10	32	1.54
38613170--38613287	38	3.1	38	60	16	91	28	14	21	35	1.92
38613135--38613398	75	3.5	75	98	0	501	26	13	21	37	1.91
38615433--38615458	2	13.0	2	100	0	52	50	0	0	50	1.00
38616816--38616875	27	2.2	27	78	0	66	18	35	35	11	1.87
38617452--38617515	20	3.2	20	86	6	69	10	1	6	81	0.94
38617452--38617505	26	2.1	26	83	13	67	11	1	5	81	0.93
38617475--38617512	14	2.7	14	91	0	58	7	0	5	86	0.69
38617458--38617524	22	3.1	22	82	10	84	11	1	5	80	0.95
38620483--38620615	46	2.9	46	87	2	187	37	10	22	29	1.88
38622932--38622961	10	3.0	10	90	0	51	56	0	0	43	0.99
38637999--38638052	24	2.2	24	86	0	72	51	5	0	42	1.25
38640498--38640536	20	2.0	20	85	10	53	41	2	0	56	1.13
38658836--38658872	3	12.3	3	88	0	56	0	32	37	29	1.58
38658943--38659015	15	5.3	15	73	18	59	0	23	35	41	1.55
38658955--38659011	24	2.4	24	82	5	62	0	24	31	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38661262--38661299	18	2.0	19	90	10	60	28	0	5	65	1.14
38667090--38667135	21	2.2	20	84	3	56	41	2	10	45	1.51
38674979--38675011	15	2.3	15	89	5	50	3	24	0	72	0.98
38676151--38676327	72	2.5	72	88	0	266	24	5	15	54	1.62
38679840--38679884	1	45.0	1	95	0	81	97	0	0	2	0.15
38680425--38680582	82	1.9	83	88	3	239	51	12	5	29	1.62
38682145--38682192	23	2.1	23	92	0	78	27	25	4	43	1.72
38682200--38682248	23	2.1	24	96	3	91	20	24	4	51	1.65
38685077--38685101	6	4.2	6	100	0	50	36	48	16	0	1.46
38688298--38688365	31	2.3	31	79	5	86	30	14	13	41	1.84
38693172--38693228	9	6.6	9	77	16	50	70	3	0	26	1.03
38693179--38693228	17	2.9	16	78	21	57	70	4	0	26	1.05
38696885--38696995	53	2.1	53	100	0	222	50	7	5	36	1.53
38699355--38699444	45	2.0	45	100	0	180	26	24	4	44	1.72
38705249--38705536	144	2.0	145	99	0	569	34	4	7	53	1.50
38709347--38709442	31	3.2	31	67	5	79	32	10	10	46	1.72
38709370--38709466	29	3.3	29	70	5	86	31	8	9	50	1.64
38709348--38709466	60	2.0	60	93	0	202	31	9	10	48	1.68
38711003--38711064	29	2.1	29	82	11	74	56	6	4	32	1.46
38713118--38713266	34	4.4	34	82	3	147	40	14	13	31	1.84
38713118--38713257	68	2.1	68	81	0	163	40	15	12	31	1.84
38718296--38718334	19	2.2	19	86	9	55	56	2	2	38	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38720539--38720614	25	3.0	25	78	0	89	19	26	19	34	1.96
38720539--38720638	50	2.0	49	86	5	139	20	26	20	34	1.96
38726976--38727020	24	2.0	22	86	8	63	60	0	2	37	1.09
38726994--38727256	131	2.0	132	99	0	519	44	9	9	36	1.70
38739959--38739999	16	2.6	16	92	0	64	48	2	2	46	1.28
38741835--38741882	21	2.3	21	96	3	89	39	16	10	33	1.83
38748833--38748956	41	3.0	41	100	0	248	12	19	7	61	1.53
38757086--38757129	22	2.0	21	82	4	52	47	0	11	40	1.39
38758019--38758080	10	6.3	9	75	20	54	35	3	0	61	1.12
38758037--38758074	19	2.0	20	89	5	60	34	5	0	60	1.19
38760720--38760766	20	2.4	19	82	10	58	53	6	6	34	1.52
38762727--38762836	56	2.0	56	100	0	220	35	16	10	37	1.84
38767491--38768156	271	2.5	271	93	0	1125	28	20	18	31	1.97
38767340--38768160	44	18.2	44	70	11	378	28	20	18	32	1.96
38768925--38769118	104	1.9	104	85	2	273	45	7	19	27	1.77
38793307--38793340	17	2.0	17	94	0	59	26	23	8	41	1.83
38795866--38795957	41	2.3	40	78	1	94	51	7	1	40	1.38
38796514--38796563	25	1.9	27	88	8	77	50	2	8	40	1.43
38805856--38805924	26	2.7	26	84	2	86	15	26	23	34	1.95
38807995--38808081	25	3.5	25	74	12	79	31	20	26	21	1.98
38808117--38808214	50	2.0	50	80	8	110	37	23	21	17	1.94
38808110--38808214	25	4.2	25	68	14	65	38	23	21	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38808207--38808278	25	3.0	24	81	6	83	34	25	25	15	1.94
38808201--38808286	25	3.5	25	72	13	79	34	24	24	16	1.95
38809949--38810038	25	3.5	25	75	10	74	22	24	21	32	1.98
38810706--38811427	361	2.0	361	100	0	1444	30	11	24	33	1.91
38821618--38821730	56	2.0	56	94	0	199	23	11	23	40	1.87
38831230--38831365	43	3.2	43	89	0	209	26	29	18	25	1.98
38832620--38832646	5	5.4	5	100	0	54	81	0	0	18	0.69
38836416--38836512	37	2.6	37	93	1	169	62	1	2	34	1.13
38836814--38836845	7	4.6	7	92	0	55	34	50	0	15	1.45
38836865--38836897	14	2.3	15	94	5	59	36	33	0	30	1.58
38837291--38837507	41	5.3	41	81	5	251	32	23	17	25	1.97
38837287--38837507	82	2.7	82	86	1	300	31	23	19	25	1.98
38837285--38837507	123	1.8	123	85	5	317	31	23	19	25	1.98
38848796--38848850	18	3.1	18	81	0	74	38	16	1	43	1.58
38856583--38856619	9	4.1	9	92	0	65	45	13	10	29	1.77
38856655--38856697	21	2.0	21	82	8	52	20	32	0	46	1.51
38856668--38856728	30	2.0	31	90	3	97	19	40	0	39	1.52
38856824--38856854	15	2.1	15	94	5	55	6	64	0	29	1.18
38858178--38858280	40	2.6	40	84	3	127	34	23	10	31	1.89
38864264--38864302	21	1.9	20	84	5	51	71	7	0	20	1.10
38864281--38864313	17	1.9	17	88	11	50	69	3	0	27	1.03
38864291--38864342	21	2.6	19	80	11	59	71	3	0	25	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38864291--38864391	49	2.1	48	81	7	116	69	3	1	24	1.16
38864338--38864383	20	2.2	22	88	7	69	69	4	4	21	1.24
38864982--38865055	9	8.1	9	72	14	53	35	2	2	59	1.26
38864949--38865058	46	2.4	43	76	8	112	37	3	1	57	1.27
38872310--38872364	29	1.9	29	88	3	85	30	16	16	36	1.91
38877393--38877458	22	3.0	22	68	0	60	19	21	30	28	1.98
38877502--38877592	28	3.3	28	78	1	94	31	13	28	26	1.93
38880854--38880920	31	2.2	31	83	0	80	34	19	8	37	1.83
38886419--38886615	42	4.7	42	86	0	250	14	21	17	45	1.85
38886428--38886620	21	9.2	21	70	2	127	15	22	18	44	1.87
38888316--38888368	25	2.2	24	86	3	70	15	20	24	39	1.91
38888669--38888865	42	4.7	42	86	0	250	14	21	17	45	1.85
38888678--38888870	21	9.2	21	70	2	127	15	22	18	44	1.87
38890566--38890618	25	2.2	24	86	3	70	15	20	24	39	1.91
38892602--38892626	13	1.9	13	100	0	50	16	24	32	28	1.96
38893266--38893308	22	1.9	23	90	4	70	23	6	11	58	1.57
38895369--38895430	30	2.0	32	81	12	76	27	8	8	56	1.56
38895575--38895618	14	3.1	14	80	3	52	70	0	2	27	0.99
38897258--38897296	3	12.3	3	89	10	60	64	0	2	33	1.08
38900231--38900265	17	2.1	17	88	0	52	45	20	0	34	1.51
38903614--38903649	18	1.9	19	94	5	65	58	5	5	30	1.44
38903697--38903772	4	18.5	4	76	10	73	71	1	26	1	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38903709--38903772	25	2.6	25	85	5	85	71	1	26	0	0.94
38903708--38903780	21	3.4	21	81	9	85	71	1	27	0	0.95
38904622--38904752	41	3.3	41	75	9	137	26	16	22	34	1.95
38904628--38904753	37	3.2	40	75	7	141	26	16	23	33	1.96
38904927--38904969	22	2.0	22	90	4	70	44	4	25	25	1.73
38906878--38906942	30	2.1	31	88	2	96	41	21	15	21	1.90
38913856--38913901	20	2.3	20	85	10	60	60	8	0	30	1.26
38918197--38918239	13	3.3	13	80	0	50	39	18	4	37	1.72
38918198--38918273	39	1.9	40	83	2	100	38	17	5	39	1.72
38920164--38920338	52	3.3	52	84	5	228	26	13	14	45	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128