genome.fa.s12.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  117  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38922333--38922374	20	2.1	20	90	0	66	40	9	16	33	1.81
38922383--38922413	15	2.1	15	100	0	62	22	12	25	38	1.90
38924937--38924978	20	2.1	20	90	0	66	40	9	16	33	1.81
38924987--38925017	15	2.1	15	100	0	62	22	12	25	38	1.90
38925989--38926062	10	7.3	10	74	18	64	67	0	1	31	0.99
38925930--38926043	11	10.9	11	73	16	66	58	0	3	37	1.15
38925998--38926093	41	2.3	41	90	1	147	62	0	4	33	1.14
38925936--38926075	62	2.3	62	79	10	153	62	0	4	33	1.15
38925930--38926084	52	3.0	52	80	13	176	59	0	4	36	1.18
38926024--38926096	19	3.7	19	73	10	74	58	0	4	36	1.17
38927937--38928016	26	3.2	25	73	18	69	60	1	0	38	1.05
38928204--38928259	26	2.1	27	86	3	78	58	1	0	39	1.08
38927967--38928453	243	2.0	244	99	0	967	41	7	17	33	1.78
38937650--38937685	19	1.9	18	88	5	54	58	2	8	30	1.42
38948036--38948109	37	2.0	37	100	0	148	37	2	27	32	1.71
38949493--38949713	110	2.0	110	99	0	433	38	2	6	52	1.41
38950690--38950742	28	1.9	28	92	3	90	69	1	1	26	1.09
38961982--38962032	24	2.1	25	85	3	68	5	15	3	74	1.16
38962113--38962152	20	2.0	20	90	0	62	27	10	12	50	1.72
38962098--38962164	34	1.9	35	90	3	109	31	8	13	46	1.74
38962092--38962168	14	5.0	15	71	20	52	33	9	14	42	1.77
38971508--38971545	5	7.8	5	83	16	53	21	0	0	78	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38971508--38971544	13	3.0	13	92	7	60	21	0	0	78	0.75
38972870--38973368	249	2.0	250	99	0	991	38	12	10	38	1.78
38982608--38982668	3	20.3	3	100	0	122	32	0	0	67	0.91
38985101--38985190	3	30.3	3	97	2	173	33	0	0	66	0.92
38987529--38987859	46	7.6	46	77	16	330	29	21	14	35	1.93
38987575--38987704	51	2.6	51	88	8	180	30	20	14	35	1.92
38987529--38987704	97	1.8	97	90	2	282	28	21	15	34	1.94
38987671--38987822	36	3.9	36	80	15	169	29	19	13	38	1.89
38987623--38987859	82	2.9	82	91	1	390	30	20	13	35	1.91
38989582--38989623	21	2.0	21	85	0	57	45	11	4	38	1.62
38995868--38995901	18	1.9	18	88	5	52	55	5	0	38	1.24
38995992--38996042	20	2.5	20	78	15	59	62	1	3	31	1.24
38996803--38996861	3	19.7	3	100	0	118	67	0	0	32	0.91
39001059--39001156	48	2.0	48	92	0	160	26	39	3	30	1.71
39002007--39002054	25	1.9	25	83	8	62	35	22	4	37	1.74
39008355--39008455	50	2.0	50	98	0	193	17	24	21	35	1.95
39008881--39008905	13	1.9	13	100	0	50	32	4	0	64	1.12
39009091--39009142	25	2.0	27	82	14	65	44	1	5	48	1.38
39011440--39011488	21	2.4	21	82	3	55	34	2	2	61	1.19
39013200--39013229	15	2.1	15	93	6	53	83	10	6	0	0.81
39016214--39016243	13	2.3	13	94	0	51	50	13	3	33	1.58
39018699--39018949	122	2.0	123	99	0	495	35	21	13	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39022454--39022483	13	2.3	13	94	0	51	50	13	3	33	1.58
39024923--39024983	26	2.4	25	79	12	63	32	22	26	18	1.97
39027158--39027202	2	22.5	2	100	0	90	0	0	48	51	1.00
39027317--39027356	18	2.2	18	86	8	55	25	35	0	40	1.56
39030604--39030725	41	3.0	41	85	4	174	24	27	18	30	1.98
39031374--39031426	15	3.3	17	79	12	67	49	13	0	37	1.42
39031253--39031687	203	2.1	206	90	5	698	43	13	3	38	1.63
39037494--39037524	12	2.6	12	94	0	53	54	6	0	38	1.26
39041466--39041802	173	1.9	174	82	5	423	28	22	19	29	1.98
39041646--39041975	44	7.5	44	69	16	166	29	23	18	29	1.98
39041731--39041846	45	2.6	45	84	10	148	27	25	20	25	1.99
39041552--39041985	219	2.0	218	88	2	647	27	23	19	29	1.98
39042107--39042338	117	2.0	117	88	1	349	27	28	19	24	1.99
39057850--39057925	23	3.3	23	94	0	134	31	25	21	22	1.98
39058944--39059474	267	2.0	268	87	1	780	25	25	20	27	1.99
39060679--39060733	19	3.2	18	80	10	62	0	18	0	81	0.68
39060685--39060733	15	3.2	15	83	13	64	0	16	0	83	0.64
39060679--39060733	18	3.1	17	79	7	56	0	18	0	81	0.68
39060679--39060724	9	5.0	9	86	5	65	0	17	0	82	0.67
39063465--39063497	9	3.8	9	88	4	50	42	15	21	21	1.89
39066174--39066210	17	2.1	18	90	10	58	51	5	0	43	1.24
39069136--39069161	10	2.6	10	100	0	52	0	57	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39069557--39069616	30	2.0	31	83	9	79	20	36	0	43	1.52
39070488--39070572	25	3.4	25	96	3	161	35	20	10	34	1.87
39082534--39082568	18	1.9	18	88	11	54	42	5	17	34	1.73
39086225--39086372	73	2.0	74	90	1	235	43	13	31	12	1.81
39089982--39090044	26	2.4	26	89	5	92	42	6	14	36	1.71
39093307--39093350	18	2.4	18	92	0	70	40	45	2	11	1.53
39099537--39099622	21	4.0	22	77	8	97	17	22	22	38	1.93
39103969--39104028	32	1.9	31	86	3	84	40	6	5	48	1.51
39107212--39107286	37	2.0	37	97	0	141	33	20	5	41	1.75
39110473--39110524	23	2.3	23	80	6	61	65	0	1	32	1.04
39111030--39111094	24	2.9	23	78	17	82	40	1	1	56	1.18
39113152--39113197	14	3.2	14	78	21	51	36	2	6	54	1.39
39113819--39113865	24	1.9	25	87	12	71	57	8	4	29	1.48
39125162--39125224	20	3.1	20	77	8	65	71	6	7	14	1.29
39127202--39127247	23	2.1	21	84	8	56	50	0	4	45	1.21
39130325--39130388	24	2.7	24	81	13	78	31	3	3	62	1.26
39136223--39136254	16	2.0	16	100	0	64	81	0	6	12	0.87
39145784--39146032	132	1.9	132	89	2	392	36	4	5	53	1.45
39146896--39146963	21	3.3	19	77	18	66	45	1	11	41	1.50
39146936--39147401	232	2.0	233	99	0	925	48	7	10	33	1.66
39152489--39152624	69	2.0	67	88	8	204	52	7	2	38	1.42
39156814--39156895	27	3.0	27	82	3	103	18	20	35	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39156960--39156996	16	2.4	16	90	4	58	59	5	2	32	1.34
39157728--39157861	19	6.3	19	72	21	106	54	11	0	32	1.42
39157664--39157756	32	3.1	28	64	21	64	59	9	0	31	1.30
39157606--39157749	61	2.4	61	96	0	261	59	11	0	29	1.32
39157742--39157805	27	2.4	27	91	0	101	54	10	0	34	1.35
39157728--39157861	46	3.0	44	81	12	166	54	11	0	32	1.42
39175735--39175814	28	2.8	28	70	12	65	25	18	36	20	1.95
39181418--39181442	12	2.1	12	100	0	50	16	40	16	28	1.89
39181436--39181483	25	1.9	25	91	0	78	37	16	22	22	1.94
39181469--39181522	25	2.2	25	89	0	81	29	18	25	25	1.98
39181475--39181530	25	2.2	25	96	0	103	25	17	32	25	1.97
39181567--39181625	24	2.4	24	85	2	73	35	20	25	18	1.95
39190391--39190443	27	2.0	27	88	7	81	30	22	11	35	1.89
39193645--39193698	26	2.1	26	82	6	65	29	12	16	40	1.86
39195132--39195170	20	1.9	21	85	15	55	23	17	12	46	1.83
39197568--39197614	20	2.3	20	85	7	60	40	12	12	34	1.82
39198366--39198409	22	2.0	22	82	8	54	52	18	6	22	1.69
39198386--39198496	57	1.9	57	96	3	206	34	12	16	36	1.86
39203992--39204057	1	66.0	1	100	0	132	100	0	0	0	0.00
39204995--39205062	31	2.2	31	81	5	75	38	7	13	41	1.72
39210660--39210770	11	10.4	11	71	15	90	38	4	0	56	1.20
39210652--39210769	42	2.8	42	98	0	227	38	4	0	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39210711--39210785	31	2.4	32	93	4	134	40	4	0	56	1.18
39210753--39210792	21	1.9	21	89	0	62	37	2	0	60	1.11
39211457--39211506	26	1.9	26	91	0	82	16	0	26	58	1.38
39216844--39216910	24	2.9	22	78	12	64	37	17	19	25	1.94
39216844--39216910	23	2.9	23	80	8	73	37	17	19	25	1.94
39221092--39221121	2	15.0	2	100	0	60	0	50	0	50	1.00
39221206--39221236	2	15.5	2	100	0	62	0	51	0	48	1.00
39239463--39239523	18	3.2	18	68	20	52	21	8	9	60	1.54
39239653--39239682	13	2.2	14	94	5	53	73	0	0	26	0.84
39244236--39244280	23	2.0	23	81	0	54	71	2	26	0	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128