genome.fa.s12.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  121  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40102589--40102734	22	6.8	21	70	9	80	43	32	0	22	1.58
40103036--40103234	41	4.9	41	93	0	308	28	29	20	21	1.98
40103264--40103373	40	2.8	40	79	6	109	22	21	22	32	1.98
40109995--40110120	40	3.1	40	73	3	110	44	17	16	21	1.87
40117681--40117754	37	2.0	37	97	0	139	18	22	10	47	1.80
40117955--40118025	34	2.1	34	97	0	133	18	16	21	43	1.88
40118413--40118440	11	2.5	11	100	0	56	46	10	10	32	1.73
40133889--40134071	95	1.9	95	80	2	215	30	15	21	32	1.94
40134847--40134893	24	1.9	24	86	4	67	36	0	38	25	1.56
40135242--40135422	27	6.7	27	87	1	247	41	23	19	14	1.89
40135760--40135847	30	3.0	29	82	9	99	26	28	20	25	1.99
40135760--40135861	28	3.6	27	81	12	98	25	27	20	26	1.99
40140026--40140123	44	2.3	43	85	5	126	29	24	17	28	1.97
40140096--40140204	42	2.6	41	75	17	114	28	17	22	32	1.96
40141068--40141109	19	2.3	19	76	8	52	42	0	2	54	1.13
40151549--40151612	26	2.5	26	78	0	65	46	4	3	45	1.39
40165187--40165226	2	20.0	2	100	0	80	50	0	0	50	1.00
40167852--40167917	35	1.9	34	84	9	89	28	6	3	62	1.34
40173404--40173515	23	4.9	23	78	0	125	36	26	6	30	1.81
40173404--40173515	46	2.4	46	89	0	170	36	26	6	30	1.81
40181569--40181982	208	2.0	208	94	0	731	29	17	24	28	1.97
40186382--40186418	12	2.9	12	92	8	56	72	0	2	24	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40186382--40186428	21	2.3	20	88	3	67	74	0	2	23	0.93
40186960--40187224	94	2.8	95	85	0	352	30	20	19	30	1.97
40186960--40187230	95	2.9	94	85	0	353	29	19	19	30	1.97
40194385--40194633	27	9.1	28	73	8	156	30	6	20	42	1.76
40194385--40194571	82	2.3	82	79	5	207	32	6	18	42	1.76
40194402--40194571	55	3.1	54	78	5	173	34	5	17	42	1.73
40198658--40198699	20	2.0	21	90	4	68	2	0	19	78	0.86
40198661--40198697	15	2.5	15	84	16	51	2	0	13	83	0.74
40198818--40198845	3	9.3	3	100	0	56	67	0	0	32	0.91
40201323--40201386	26	2.5	26	84	0	74	48	4	3	43	1.39
40205242--40205300	31	1.9	31	96	0	109	35	13	3	47	1.60
40205304--40205339	3	12.0	3	100	0	72	66	0	0	33	0.92
40205242--40205314	31	2.4	31	88	4	96	38	12	2	46	1.56
40206527--40206554	3	9.3	3	100	0	56	67	0	0	32	0.91
40209318--40209352	11	3.2	11	83	0	52	68	2	2	25	1.17
40209490--40209591	54	1.9	52	80	11	118	57	3	4	33	1.38
40210800--40210856	30	1.9	30	88	0	87	12	0	24	63	1.29
40211033--40211287	44	5.8	44	72	7	178	29	22	17	30	1.97
40211304--40211715	44	8.8	44	65	12	169	27	23	21	27	1.99
40211206--40211870	143	4.7	143	88	1	958	27	23	20	28	1.99
40218186--40218224	8	4.8	8	81	6	51	82	7	0	10	0.86
40218179--40218228	9	5.7	9	80	7	50	80	6	2	12	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40218176--40218237	26	2.4	25	91	5	97	74	12	1	11	1.15
40221294--40221622	113	2.9	111	79	8	360	25	23	24	27	2.00
40222854--40223760	445	2.0	445	96	0	1697	29	16	19	34	1.94
40225375--40225432	28	2.1	27	90	3	89	53	12	1	32	1.48
40225383--40225444	18	3.4	18	78	10	63	50	16	1	32	1.55
40225383--40225441	9	6.4	9	76	3	55	50	16	1	30	1.55
40225375--40225441	27	2.4	28	85	2	73	52	14	1	31	1.51
40232664--40232721	21	2.8	21	94	0	98	39	20	36	3	1.70
40233042--40233160	42	2.8	43	83	3	168	25	20	23	31	1.98
40233360--40233403	22	2.0	22	86	0	61	47	27	15	9	1.76
40235097--40235136	21	1.9	21	84	0	53	52	12	15	20	1.74
40237973--40237998	12	2.2	12	100	0	52	53	7	7	30	1.57
40238542--40238880	41	8.3	41	92	1	572	18	21	32	27	1.97
40239041--40239117	21	3.6	21	78	1	73	22	1	27	49	1.58
40240596--40240632	10	3.7	10	100	0	74	18	18	10	51	1.75
40241541--40241590	18	2.8	18	96	0	91	24	16	32	28	1.96
40241371--40241688	43	7.6	42	75	12	219	22	17	30	30	1.96
40243121--40243152	17	1.9	17	93	6	57	62	3	0	34	1.11
40249462--40249499	20	1.9	20	84	10	51	55	2	7	34	1.43
40249517--40249561	18	2.5	18	82	7	56	55	8	0	35	1.31
40249520--40249565	15	2.9	16	79	17	51	56	8	0	34	1.30
40251048--40251132	15	5.3	15	68	15	62	32	15	5	45	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40251034--40251132	33	3.0	33	96	0	189	33	13	6	47	1.67
40251034--40251117	18	5.0	18	68	15	63	32	13	5	48	1.66
40255155--40255348	63	3.1	63	84	3	212	28	30	19	21	1.97
40258831--40258883	18	2.8	19	81	15	58	60	3	3	32	1.32
40258853--40258896	18	2.4	18	81	7	54	63	4	4	27	1.33
40259490--40259535	23	2.0	24	82	4	58	32	2	0	65	1.05
40260139--40260168	15	2.0	15	93	0	51	23	13	0	63	1.29
40266962--40267013	19	2.7	19	85	5	61	28	23	5	42	1.77
40274598--40274976	44	8.5	44	78	6	307	32	17	21	29	1.96
40274598--40274978	136	2.8	135	81	3	394	32	17	21	29	1.96
40281575--40281639	28	2.3	28	84	7	87	21	30	0	47	1.51
40281647--40281715	7	10.0	7	72	9	52	33	14	0	52	1.42
40281655--40281715	21	3.0	20	85	4	68	34	11	0	54	1.37
40286992--40287043	17	2.8	20	77	17	74	40	17	15	26	1.89
40294725--40294901	32	5.9	31	69	18	97	40	3	5	51	1.41
40294724--40294987	120	2.2	120	100	0	528	42	3	5	49	1.40
40299308--40299344	14	2.5	15	83	16	51	21	5	18	54	1.64
40305866--40305938	38	1.9	38	86	10	105	24	15	21	38	1.92
40306706--40306769	30	2.1	32	88	5	96	60	17	3	18	1.48
40308927--40309015	21	4.0	21	82	16	115	24	66	0	8	1.20
40308913--40308951	15	2.6	15	100	0	78	25	69	0	5	1.09
40308938--40309005	27	2.5	27	85	4	93	23	66	0	10	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40311378--40311429	21	2.5	21	93	0	86	23	69	0	7	1.14
40311364--40311402	15	2.6	15	100	0	78	25	69	0	5	1.09
40311410--40311434	6	4.2	6	100	0	50	20	64	0	16	1.30
40312442--40312559	50	2.4	50	86	2	157	33	16	27	22	1.95
40312478--40312556	25	3.2	25	65	13	63	37	17	27	16	1.91
40317038--40317323	46	6.3	46	91	3	404	35	12	21	30	1.90
40323688--40323844	43	3.7	43	93	0	260	27	30	17	24	1.97
40323688--40323910	86	2.6	86	84	2	252	30	28	17	24	1.97
40323914--40323947	15	2.2	16	89	5	52	41	5	0	52	1.25
40325142--40325195	24	2.3	24	80	3	65	46	18	14	20	1.84
40328116--40328277	41	4.0	41	79	6	193	32	30	18	18	1.95
40328116--40328270	82	1.9	82	86	2	222	32	28	19	19	1.96
40328308--40328443	39	3.4	39	77	11	125	24	19	18	37	1.94
40328328--40328445	39	3.0	39	80	10	143	26	21	17	34	1.95
40330087--40330112	13	2.0	13	100	0	52	46	0	0	53	1.00
40339259--40339387	63	2.0	64	96	1	242	28	13	17	40	1.87
40340234--40340271	19	2.0	19	94	0	67	47	7	21	23	1.77
40343473--40343511	21	2.0	19	85	14	53	20	23	5	51	1.67
40346598--40346658	23	2.6	23	80	12	70	39	0	6	54	1.27
40346790--40346838	24	2.1	24	84	3	64	51	16	8	24	1.71
40347077--40347110	18	1.9	18	94	5	61	41	8	0	50	1.34
40356979--40357014	16	2.2	16	100	0	72	38	36	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40364650--40364709	27	2.2	27	100	0	120	10	36	31	21	1.87
40374470--40374740	89	3.0	89	99	0	533	43	13	14	27	1.83
40375602--40375642	2	20.5	2	100	0	82	51	0	48	0	1.00
40377610--40377722	61	1.9	58	85	8	156	50	3	4	41	1.39
40377698--40377749	20	2.8	18	78	21	63	51	3	0	44	1.19
40377667--40377812	70	2.1	68	82	10	168	52	2	3	41	1.32
40378884--40378941	9	6.4	9	85	0	80	37	24	12	25	1.90
40378884--40378941	18	3.2	18	90	0	89	37	24	12	25	1.90
40387852--40387903	20	2.8	18	78	21	63	51	3	0	44	1.19
40387819--40387966	70	2.1	68	82	9	172	52	2	3	41	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128