genome.fa.s12.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  98  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32547802--32547827	10	2.6	10	100	0	52	7	0	0	92	0.39
32547788--32547825	16	2.4	17	82	13	53	13	2	0	84	0.73
32547821--32547910	46	2.0	46	88	2	137	14	22	20	43	1.87
32548644--32548685	22	1.9	22	100	0	84	50	19	14	16	1.79
32548712--32548751	11	3.6	11	80	12	55	2	20	0	77	0.88
32548713--32548752	17	2.4	17	91	4	64	2	20	0	77	0.88
32551412--32551444	16	2.1	16	94	0	57	39	21	18	21	1.93
32552515--32552572	24	2.4	25	80	8	66	53	1	8	36	1.42
32554192--32554336	72	2.0	72	94	0	254	50	17	8	23	1.74
32559780--32560020	129	1.9	128	83	2	313	39	12	13	34	1.82
32560042--32560282	120	2.0	120	89	0	365	37	5	19	37	1.76
32560074--32560307	120	2.0	118	83	4	292	36	5	21	36	1.76
32566399--32566440	13	3.2	13	86	0	57	42	2	11	42	1.54
32572640--32572683	20	2.1	21	84	12	56	61	2	0	36	1.09
32575500--32575529	13	2.4	12	89	10	51	30	3	23	43	1.70
32577160--32577243	41	2.0	41	100	0	168	21	26	26	26	1.99
32577164--32577273	41	2.7	41	88	2	132	22	23	25	28	2.00
32588339--32588401	17	3.5	17	70	12	54	73	4	3	19	1.15
32590389--32590506	44	2.7	44	80	7	132	29	19	19	31	1.96
32590527--32590714	100	1.9	100	89	2	297	25	23	22	28	1.99
32590534--32590737	100	2.0	100	81	3	239	27	23	21	27	1.99
32601609--32601954	170	2.0	170	100	0	692	25	19	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32606457--32606513	29	2.0	29	89	6	89	66	1	1	29	1.12
32607350--32607388	20	2.0	20	90	10	62	76	2	5	15	1.06
32608780--32608843	26	2.4	27	69	21	64	34	0	9	56	1.32
32612089--32612122	17	2.0	17	88	0	50	82	2	14	0	0.79
32612086--32612122	16	2.3	17	81	13	51	81	5	13	0	0.86
32624459--32624531	37	1.9	37	88	2	110	45	1	21	31	1.61
32627503--32627611	29	3.7	29	74	12	107	37	11	27	22	1.90
32627479--32627608	58	2.2	59	86	5	183	40	11	24	23	1.87
32636658--32636802	50	2.9	50	81	2	166	33	22	16	27	1.95
32638110--32638319	92	2.3	91	89	2	312	42	15	7	33	1.76
32638148--32638286	31	4.6	30	73	12	131	44	16	7	31	1.75
32642706--32642745	20	2.0	20	90	9	64	30	15	30	25	1.95
32642749--32642787	20	2.0	19	85	5	51	38	12	35	12	1.82
32644534--32644592	22	2.6	22	76	10	57	28	0	5	66	1.13
32646326--32646373	10	4.8	10	78	0	51	39	2	33	25	1.67
32646326--32646369	15	2.9	15	93	0	70	38	2	34	25	1.68
32647127--32647264	50	2.8	50	81	4	154	23	18	27	30	1.97
32647133--32647315	51	3.6	49	77	3	161	24	17	27	30	1.97
32647373--32647525	33	4.5	33	71	22	138	18	17	28	35	1.94
32647341--32647633	102	2.9	102	95	0	514	20	19	29	31	1.97
32649992--32650082	48	1.9	47	86	2	128	20	13	26	39	1.89
32656977--32657059	26	3.2	26	65	21	66	28	13	26	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32662547--32662599	24	2.2	24	96	0	97	22	13	22	41	1.88
32672236--32672312	40	1.9	40	84	5	102	23	16	18	41	1.90
32674943--32675001	27	2.2	27	84	0	73	32	23	30	13	1.93
32678087--32678121	18	1.9	18	88	0	52	31	5	34	28	1.81
32680839--32680893	26	2.1	26	83	6	67	56	10	12	20	1.66
32686372--32686439	28	2.4	28	95	0	118	25	32	16	26	1.96
32687168--32687423	127	2.0	126	96	0	476	47	9	7	35	1.65
32687443--32687468	3	8.7	3	100	0	52	69	30	0	0	0.89
32687846--32687894	22	2.2	22	81	3	53	42	4	4	48	1.40
32687678--32687971	142	2.1	141	87	5	425	41	5	9	43	1.60
32690235--32690277	16	2.4	19	81	14	56	18	4	4	72	1.20
32692885--32693270	27	14.4	27	82	1	425	18	15	20	45	1.86
32693958--32694004	24	1.9	25	86	4	69	27	34	0	38	1.57
32695037--32695063	3	9.0	3	100	0	54	66	0	33	0	0.92
32695233--32695273	12	3.4	12	82	0	55	19	29	4	46	1.71
32696742--32696798	28	2.0	28	96	0	105	43	14	17	24	1.86
32699837--32699868	15	2.2	15	94	5	57	31	3	0	65	1.08
32703499--32703566	34	2.0	34	97	0	127	29	29	16	25	1.96
32705324--32705836	42	12.3	42	84	1	627	21	18	22	37	1.94
32706813--32706869	22	2.6	22	78	10	62	38	5	5	50	1.47
32706620--32706918	151	2.0	149	90	3	476	43	4	9	43	1.54
32706885--32706935	19	2.8	18	72	24	52	39	1	9	49	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32707261--32707302	21	2.0	21	85	0	57	21	4	2	71	1.16
32718427--32718488	30	2.1	30	100	0	124	62	3	9	24	1.40
32722786--32722872	28	3.1	28	66	21	83	24	10	6	58	1.55
32722764--32722872	55	2.0	55	100	0	218	24	12	5	56	1.57
32724464--32724521	26	2.2	27	81	6	66	31	1	1	65	1.13
32732960--32733066	55	1.9	55	92	0	178	28	6	21	43	1.77
32741237--32741310	27	2.8	26	78	13	78	17	17	20	44	1.87
32741232--32741363	53	2.5	54	75	4	126	19	15	21	43	1.88
32741263--32741404	27	5.3	26	72	15	87	21	15	19	43	1.87
32745699--32745755	24	2.4	24	85	5	71	31	22	19	26	1.98
32748839--32749030	50	3.8	50	85	2	260	26	22	30	20	1.98
32757305--32757333	13	2.1	14	93	6	51	44	13	0	41	1.44
32760732--32760775	23	1.9	22	82	17	54	38	22	0	38	1.55
32760821--32760913	45	2.1	45	87	4	134	33	17	18	31	1.94
32760909--32761105	50	4.0	48	75	10	157	30	23	17	28	1.97
32764248--32764414	50	3.3	50	80	4	167	20	31	22	25	1.98
32768774--32769066	50	5.8	50	85	0	388	20	29	22	27	1.98
32774197--32774239	17	2.5	17	96	0	77	9	23	41	25	1.84
32774486--32774607	27	4.5	27	81	6	140	45	15	14	24	1.84
32774593--32774900	27	11.4	27	85	5	124	32	20	23	23	1.98
32774605--32774898	54	5.4	54	88	0	408	31	21	24	23	1.98
32774605--32774898	81	3.6	81	88	0	428	31	21	24	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32774917--32774980	24	2.7	24	87	4	76	31	7	18	42	1.79
32774936--32775048	24	4.8	24	85	2	129	26	6	23	44	1.76
32775113--32775177	27	2.4	27	83	14	82	20	24	23	32	1.98
32775131--32775209	27	3.0	26	79	5	68	20	25	22	31	1.98
32775183--32775228	14	3.4	14	75	22	53	13	21	28	36	1.91
32775165--32775229	26	2.5	26	94	0	112	16	21	26	35	1.95
32775233--32775426	32	6.1	32	81	3	187	24	19	17	38	1.92
32775251--32775423	96	1.8	95	83	3	231	24	19	17	38	1.93
32778502--32778531	14	2.1	14	93	0	51	16	43	0	40	1.48
32780394--32780424	15	2.1	15	100	0	62	38	6	0	54	1.26
32785253--32785389	50	2.7	50	89	0	211	26	23	29	20	1.99
32791236--32791279	18	2.3	20	88	11	67	52	0	2	45	1.13
32791877--32791906	14	2.1	14	93	0	51	16	43	0	40	1.48
32801427--32801484	25	2.3	25	80	11	66	39	3	0	56	1.16
32806898--32806955	25	2.3	25	80	11	66	39	3	0	56	1.16
32825547--32825682	40	3.4	41	77	8	131	38	19	19	21	1.93
32826099--32826147	14	3.4	14	86	5	71	24	0	36	38	1.56
32826166--32826224	7	8.1	7	75	5	55	20	3	45	30	1.67
32826403--32826470	21	3.2	22	83	10	79	19	0	41	39	1.51
32826403--32826470	7	9.6	7	72	15	50	19	0	41	39	1.51
32826665--32826699	15	2.4	14	86	9	52	22	0	37	40	1.55
32826686--32826726	21	2.0	20	85	4	55	19	0	41	39	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32826115--32826865	272	2.7	271	86	7	1057	28	2	27	41	1.69
32827348--32827550	104	2.0	102	89	4	311	53	11	8	27	1.65
32827224--32827671	240	1.9	233	85	5	614	48	11	10	29	1.73
32831866--32831892	14	1.9	14	100	0	54	51	0	3	44	1.19
32831910--32832218	43	7.3	43	80	3	320	24	17	29	29	1.97
32831910--32832225	85	3.7	84	80	5	330	25	16	28	29	1.97
32838775--32838847	37	2.0	37	81	7	87	54	23	6	15	1.64
32842226--32842261	5	7.0	5	96	3	63	77	0	19	2	0.88
32842883--32843224	42	8.1	42	87	0	450	37	22	17	22	1.94
32842883--32843224	126	2.7	126	88	0	504	37	22	17	22	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128