genome.fa.s12.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  53  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16838045--16838097	25	2.1	25	92	0	88	37	3	11	47	1.58
16841194--16841242	20	2.4	21	86	3	64	14	48	0	36	1.44
16841194--16841242	7	7.1	7	83	4	64	14	48	0	36	1.44
16848270--16848500	126	1.8	126	84	1	320	33	17	17	31	1.94
16849904--16849941	19	2.0	19	100	0	76	42	5	10	42	1.62
16853568--16853620	23	2.2	25	83	12	67	37	16	24	20	1.93
16856770--16856855	25	3.2	25	68	23	75	27	16	3	52	1.60
16860501--16860562	22	2.8	22	87	0	88	14	30	16	38	1.88
16865521--16865618	23	4.3	23	76	5	90	22	14	20	42	1.88
16865547--16865635	46	1.9	46	86	0	124	23	17	21	37	1.94
16882541--16882775	95	2.5	95	86	1	328	37	13	16	32	1.88
16882924--16883272	95	3.7	94	80	3	380	38	13	15	32	1.86
16890871--16891116	58	4.2	58	78	3	199	39	21	11	27	1.88
16890889--16891128	87	2.8	86	76	3	221	37	21	10	30	1.87
16890871--16891121	29	8.7	29	75	5	166	38	21	11	27	1.89
16890849--16891128	29	9.7	28	75	8	150	37	21	11	29	1.89
16897098--16897161	29	2.2	28	86	2	83	35	4	12	46	1.62
16897363--16897396	14	2.4	14	95	0	59	29	26	14	29	1.95
16899615--16899644	15	2.1	15	93	6	53	10	6	6	76	1.15
16902788--16902836	22	2.2	22	82	10	55	38	26	2	32	1.68
16905078--16905107	13	2.3	13	94	0	51	33	3	13	50	1.58
16905202--16905394	50	3.8	50	86	0	260	27	21	29	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16909777--16909808	15	2.2	15	94	5	57	12	6	6	75	1.19
16913376--16913527	40	3.8	40	80	7	159	34	19	23	22	1.96
16913563--16913847	41	7.0	41	87	1	401	21	23	27	28	1.99
16921444--16921503	18	3.4	18	64	13	52	43	6	10	40	1.64
16921702--16921864	43	3.8	43	90	0	254	21	17	32	28	1.96
16923272--16923441	68	2.5	69	84	2	218	31	22	24	20	1.98
16923722--16923784	30	2.1	31	96	3	119	28	17	19	34	1.94
16930761--16930802	21	2.0	21	81	9	50	50	2	0	47	1.14
16931926--16932028	28	3.6	28	72	13	77	59	0	0	38	1.11
16931938--16931976	20	1.9	21	89	5	62	61	0	0	38	0.96
16931928--16931999	18	3.9	18	74	13	65	58	0	1	40	1.07
16932081--16932126	19	2.3	20	81	3	58	69	2	6	21	1.22
16931798--16932591	397	2.0	397	100	0	1588	47	8	6	37	1.61
16932323--16932425	28	3.6	28	72	13	77	59	0	0	38	1.11
16932335--16932373	20	1.9	21	89	5	62	61	0	0	38	0.96
16932325--16932396	18	3.9	18	74	13	65	58	0	1	40	1.07
16932478--16932523	19	2.3	20	81	3	58	69	2	6	21	1.22
16932992--16933041	16	3.1	16	80	11	57	74	0	20	6	1.03
16932990--16933041	23	2.3	23	80	12	63	73	0	21	5	1.04
16937505--16937540	17	2.1	17	89	0	54	16	16	22	44	1.86
16939905--16939947	18	2.3	19	88	4	61	11	18	6	62	1.50
16940896--16940933	13	2.8	13	92	4	58	68	0	18	13	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16940895--16940932	20	1.9	20	89	10	60	68	0	18	13	1.21
16940895--16940940	20	2.3	20	85	7	58	67	0	17	15	1.24
16942228--16942867	44	14.5	44	80	4	608	30	15	24	29	1.96
16942227--16942895	133	5.0	134	86	2	861	30	15	24	28	1.96
16942227--16942867	177	3.6	178	82	3	704	30	15	24	29	1.96
16942260--16942867	221	2.7	221	80	4	706	30	15	24	29	1.96
16942231--16942897	89	7.5	90	81	3	672	30	15	24	29	1.96
16971922--16972171	41	6.1	41	82	3	270	19	28	17	34	1.95
16971921--16972159	123	1.9	123	85	1	327	19	28	17	35	1.94
16975963--16976000	19	2.0	20	89	5	60	47	21	0	31	1.51
16976301--16976363	15	4.2	15	73	4	56	44	0	7	47	1.32
16977077--16977149	5	14.6	5	97	0	137	21	0	17	60	1.36
16977548--16977748	30	6.7	30	85	4	280	32	10	17	38	1.85
16977548--16977778	90	2.6	89	83	5	284	32	11	18	38	1.87
16977548--16977748	60	3.3	60	92	0	339	32	10	17	38	1.85
16979223--16980079	298	2.8	304	88	4	1304	21	14	16	47	1.82
16982996--16983167	87	2.0	87	95	0	308	27	18	21	33	1.96
16984817--16984856	20	2.0	20	100	0	80	20	25	10	45	1.81
16987655--16987710	13	4.5	13	78	13	73	35	0	16	48	1.46
16988218--16992406	694	6.0	695	93	1	7093	27	15	18	37	1.92
16992651--16992701	25	2.0	25	100	0	102	31	7	19	41	1.80
17000276--17000329	6	9.0	6	92	8	92	16	0	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17000279--17000329	17	2.9	18	88	11	79	15	0	0	84	0.63
17002710--17002941	118	2.0	118	82	5	281	19	25	17	37	1.93
17010556--17010634	40	2.0	40	94	0	140	41	15	5	37	1.69
17011795--17011870	20	3.7	20	75	16	66	59	0	0	40	0.98
17030071--17030110	21	1.9	21	94	0	71	20	17	2	60	1.48
17032273--17032330	27	2.1	27	96	0	107	65	8	5	20	1.40
17032356--17032384	12	2.3	13	94	5	51	75	0	0	24	0.80
17034240--17034341	41	2.5	40	82	3	123	31	17	22	28	1.97
17034400--17035038	50	12.8	50	76	3	552	26	21	22	30	1.99
17034355--17035036	100	6.9	100	87	1	966	26	21	21	30	1.98
17034355--17035289	200	4.8	200	85	5	1243	26	22	21	30	1.99
17034958--17035121	85	1.9	86	89	1	258	26	23	23	27	2.00
17034861--17035221	185	1.9	186	92	0	598	27	22	21	27	1.99
17035044--17035289	100	2.5	100	91	0	386	26	23	21	28	1.99
17035055--17035307	50	5.1	50	79	0	236	26	23	21	28	1.99
17034772--17035304	285	1.9	285	91	0	877	26	22	22	29	1.99
17040646--17040674	12	2.3	13	94	5	51	75	0	0	24	0.80
17042521--17042566	16	2.9	16	75	15	51	50	2	28	19	1.60
17046580--17046607	8	3.5	8	100	0	56	50	0	10	39	1.37
17052181--17052467	78	3.7	78	85	5	366	29	11	13	44	1.79
17052483--17052515	16	2.1	16	94	0	57	15	12	15	57	1.65
17059092--17059121	12	2.5	12	94	0	51	86	3	10	0	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17067130--17067239	52	2.1	52	98	0	211	32	33	6	27	1.82
17067423--17067478	25	2.2	26	83	3	69	28	19	0	51	1.47
17084876--17084932	21	2.7	20	71	10	51	47	8	10	33	1.69
17098923--17099012	43	2.1	43	100	0	180	15	24	4	55	1.59
17098923--17098995	22	3.4	22	78	17	98	13	26	4	56	1.55
17098938--17099006	22	3.2	22	76	12	88	13	20	4	62	1.47
17098939--17099012	21	3.5	21	77	17	89	16	21	4	58	1.55
17102090--17102145	25	2.2	25	96	0	103	30	14	28	26	1.95
17102111--17102226	25	4.7	25	72	12	87	32	17	29	20	1.95
17102136--17102254	25	4.8	25	74	12	93	33	20	28	17	1.95
17104107--17104173	29	2.3	29	84	5	91	13	34	8	43	1.75
17108900--17108956	2	29.5	2	78	7	64	45	5	0	49	1.24
17109552--17109621	3	23.3	3	100	0	140	32	0	0	67	0.91
17110756--17111006	125	2.0	125	98	0	484	18	23	17	40	1.91
17112438--17112546	53	2.0	54	98	1	211	37	22	11	28	1.89
17112999--17113030	3	10.7	3	93	0	55	28	71	0	0	0.86
17116828--17116902	28	2.6	28	93	4	123	26	17	2	53	1.57
17117058--17117145	31	2.8	31	91	0	140	43	0	34	22	1.54
17120855--17120881	3	9.0	3	100	0	54	33	0	33	33	1.58
17124042--17124148	54	2.0	54	90	0	169	23	24	19	32	1.97
17131264--17131318	16	3.5	15	74	16	58	80	1	7	10	0.99
17131248--17131314	31	2.1	32	86	13	95	77	1	4	16	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17131273--17131317	19	2.4	19	84	0	54	82	2	4	11	0.91
17131504--17131577	33	2.2	33	78	7	78	40	4	1	54	1.28
17131518--17131585	16	4.2	16	68	20	52	41	2	1	54	1.24
17133998--17134126	43	3.0	42	82	15	174	21	19	29	29	1.98
17135101--17135225	23	5.5	22	71	8	106	25	20	14	40	1.90
17135101--17135246	46	3.2	46	95	1	265	26	20	15	38	1.92
17135119--17135269	47	3.2	46	84	6	198	26	19	15	38	1.91
17135101--17135292	93	2.1	92	84	6	255	28	20	14	36	1.92
17136764--17136794	15	2.1	15	93	0	53	32	0	6	61	1.21
17147535--17147653	46	2.6	46	100	0	238	29	22	14	33	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128