genome.fa.s12.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  112  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37374561--37374600	19	2.2	19	86	4	55	25	7	2	65	1.32
37374615--37374668	22	2.4	23	79	14	67	20	9	7	62	1.48
37374818--37374848	12	2.6	12	94	0	53	32	16	6	45	1.72
37375788--37375829	19	2.2	19	86	0	57	38	9	30	21	1.85
37375795--37375832	19	2.0	19	94	0	67	39	5	34	21	1.76
37375861--37375941	41	2.0	42	87	7	121	25	25	30	17	1.97
37385715--37385902	62	3.0	62	100	0	376	28	4	11	55	1.55
37385872--37385908	15	2.6	14	91	4	56	18	0	16	64	1.29
37388755--37388793	18	2.1	18	85	9	51	10	2	10	76	1.10
37390171--37390204	16	2.1	16	88	0	50	20	14	20	44	1.87
37392342--37392381	19	2.1	19	86	9	55	22	2	15	60	1.47
37398769--37398804	13	2.8	12	91	8	54	11	33	19	36	1.87
37400708--37400740	17	1.9	17	88	11	50	57	12	6	24	1.57
37400863--37401125	132	2.0	132	87	0	382	30	20	24	25	1.99
37401890--37401927	8	4.5	8	90	9	58	10	2	0	86	0.66
37401882--37401929	9	5.4	9	92	5	62	14	4	0	81	0.84
37401890--37401929	9	4.6	9	93	6	64	12	2	0	85	0.71
37401890--37401927	17	2.2	17	95	0	67	10	2	0	86	0.66
37410984--37411013	15	1.9	16	93	6	53	40	0	3	56	1.16
37421151--37421186	18	2.0	18	100	0	72	22	16	33	27	1.95
37428197--37428230	18	1.9	18	88	5	52	29	0	5	64	1.17
37428594--37428657	32	2.0	32	100	0	128	43	9	18	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37429643--37429701	30	2.0	30	93	0	100	25	13	11	49	1.76
37430065--37430122	30	1.9	30	83	13	75	53	1	8	36	1.42
37434932--37434974	19	2.3	19	96	4	79	74	0	0	25	0.82
37434964--37434988	12	2.1	12	100	0	50	84	0	0	16	0.63
37434943--37434985	18	2.3	19	84	4	52	76	0	0	23	0.78
37435490--37435550	30	2.2	27	83	13	72	1	34	16	47	1.56
37437137--37437284	69	2.1	69	97	0	278	32	4	11	52	1.56
37448702--37448755	21	2.6	20	80	8	63	27	9	31	31	1.88
37449075--37449101	12	2.2	12	100	0	54	48	7	0	44	1.31
37452174--37452217	18	2.4	18	88	7	63	52	2	0	45	1.13
37452239--37452294	22	2.5	23	80	8	62	35	3	5	55	1.40
37452652--37452806	76	2.0	77	98	1	303	44	6	7	41	1.59
37453861--37453918	28	2.2	28	84	9	77	12	10	12	65	1.47
37456421--37456466	9	5.1	9	91	0	74	30	8	13	47	1.72
37458647--37458685	17	2.2	17	86	4	51	48	2	35	12	1.55
37459324--37459362	6	6.5	6	81	0	51	23	28	2	46	1.65
37459563--37459669	47	2.2	47	83	11	135	20	10	16	52	1.73
37463559--37463710	37	4.1	38	87	2	204	34	5	13	46	1.67
37463569--37463666	17	5.4	17	65	13	52	34	5	11	48	1.61
37463584--37463712	17	7.1	17	63	20	55	35	5	13	44	1.67
37465067--37465110	14	3.1	14	80	3	52	56	9	2	31	1.43
37465464--37465505	3	14.3	3	90	5	68	64	0	2	33	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37466946--37467480	132	4.0	133	83	7	719	27	24	19	28	1.99
37466953--37467480	265	2.0	265	88	2	794	27	24	19	28	1.99
37473580--37473615	3	12.3	3	88	5	56	63	0	2	33	1.08
37479473--37479611	4	34.8	4	100	0	278	50	24	0	25	1.50
37482831--37482957	59	2.2	59	82	5	150	50	10	12	26	1.72
37483318--37483383	29	2.2	29	83	5	78	45	12	9	33	1.73
37486657--37486728	36	2.0	36	91	0	117	30	44	0	25	1.54
37493867--37493916	14	3.5	15	76	10	52	48	16	0	36	1.46
37500056--37500452	200	2.0	201	99	0	787	38	21	8	31	1.83
37500461--37500505	18	2.4	18	82	13	56	37	2	2	57	1.23
37501410--37501467	10	6.1	9	75	16	55	58	0	0	41	0.98
37501409--37501468	30	2.0	30	90	6	95	58	0	0	41	0.98
37502062--37502322	129	2.0	130	99	0	515	36	18	12	33	1.88
37504346--37504388	22	1.9	23	85	4	61	20	0	4	74	1.00
37505268--37505351	42	2.0	42	95	0	150	27	9	7	55	1.58
37505810--37505886	30	2.6	29	75	4	82	24	12	10	51	1.71
37506397--37506425	13	2.3	13	94	5	51	27	0	24	48	1.51
37525407--37525471	11	6.0	11	81	3	78	47	0	30	21	1.51
37543811--37543842	15	2.1	16	88	11	50	59	3	0	37	1.13
37550795--37550832	3	12.7	3	89	10	60	68	0	0	31	0.90
37554819--37554859	21	1.9	22	85	5	57	17	0	29	53	1.44
37555912--37556011	51	2.0	51	86	4	139	47	2	24	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37555970--37556036	11	6.0	11	75	19	59	46	1	26	25	1.62
37555969--37556035	22	3.0	22	82	10	75	44	1	28	25	1.63
37570180--37570245	25	2.6	24	74	9	69	63	1	0	34	1.04
37574350--37574436	34	2.6	34	85	10	126	41	0	13	44	1.44
37574510--37575003	123	4.0	125	88	3	633	38	15	18	27	1.91
37575432--37575532	50	2.0	50	90	0	157	35	14	7	41	1.76
37578173--37578365	93	2.1	92	90	1	307	54	5	4	35	1.43
37578366--37578528	81	2.0	82	91	1	265	17	21	28	31	1.96
37580271--37580322	25	2.1	24	82	10	61	67	1	1	28	1.12
37597705--37597798	43	2.2	43	77	7	102	24	15	20	39	1.92
37599408--37599446	19	2.1	20	86	13	57	28	5	28	38	1.78
37609513--37609698	36	4.9	36	80	12	210	29	19	12	38	1.89
37609585--37609739	46	3.6	45	74	16	166	28	20	12	38	1.89
37609470--37609698	118	2.0	115	90	2	359	28	20	13	37	1.91
37609549--37609739	82	2.3	82	90	0	292	29	20	11	38	1.88
37612949--37612987	18	2.2	17	86	13	53	33	0	20	46	1.51
37632808--37632837	7	4.3	7	100	0	60	0	0	13	86	0.57
37635762--37635792	15	2.1	15	100	0	62	38	12	29	19	1.89
37641426--37641461	16	2.2	17	90	5	56	50	0	0	50	1.00
37645940--37645976	3	12.3	3	100	0	74	64	0	0	35	0.94
37647346--37647390	24	1.9	24	86	4	65	42	4	0	53	1.21
37654003--37654066	33	1.9	33	90	0	101	70	14	4	10	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37656452--37656575	28	4.4	28	83	2	149	29	10	27	32	1.90
37656452--37656575	57	2.2	56	84	4	151	29	10	27	32	1.90
37657082--37657417	23	14.4	22	66	13	138	24	13	19	41	1.88
37657056--37657442	94	4.1	94	97	1	722	24	13	19	41	1.89
37657011--37657431	23	18.0	22	67	17	113	25	14	19	40	1.89
37657472--37657676	48	4.3	47	68	14	134	29	13	16	40	1.87
37657442--37657751	71	4.4	71	86	4	428	28	12	17	40	1.86
37657448--37657751	143	2.1	142	87	4	434	28	12	17	41	1.86
37657054--37657638	23	25.1	22	64	22	110	25	13	19	41	1.88
37657452--37657758	23	13.0	23	66	16	92	28	12	17	41	1.86
37663091--37663120	3	10.0	3	100	0	60	33	0	0	66	0.92
37667561--37667593	16	2.0	17	94	5	59	48	0	0	51	1.00
37668567--37668615	23	2.1	22	85	14	64	22	16	6	55	1.63
37668573--37668621	24	2.0	24	81	14	57	26	20	6	46	1.73
37669372--37669436	32	2.0	32	100	0	130	50	0	6	43	1.27
37673902--37673960	29	2.1	27	85	14	77	25	13	15	45	1.82
37679415--37679462	21	2.3	21	89	7	71	22	0	2	75	0.91
37679421--37679463	21	2.0	22	95	4	79	23	0	2	74	0.93
37690937--37690964	14	2.0	14	100	0	56	92	0	7	0	0.37
37693708--37693752	23	2.0	23	86	8	65	40	4	11	44	1.60
37695250--37695400	33	4.5	33	80	6	162	39	33	9	18	1.83
37701400--37701515	41	2.7	42	78	6	119	28	21	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37702312--37702768	44	10.6	44	74	8	336	32	22	21	24	1.98
37702296--37702686	131	3.0	131	89	2	549	31	20	22	24	1.98
37702313--37702837	44	12.3	41	71	14	244	31	22	20	24	1.98
37702486--37702768	83	3.3	83	84	4	300	33	22	20	23	1.97
37704311--37704360	3	17.7	3	76	12	52	34	2	2	62	1.18
37704470--37704514	19	2.4	19	85	7	56	37	6	2	53	1.40
37705776--37705831	29	1.9	29	85	0	76	28	14	19	37	1.91
37706131--37706200	22	3.2	22	87	0	95	32	25	0	41	1.56
37709745--37709770	3	8.7	3	100	0	52	30	34	0	34	1.58
37719525--37719783	43	6.0	43	81	2	270	31	28	15	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128