genome.fa.s12.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  99  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32852245--32852286	18	2.3	18	84	15	52	76	2	14	7	1.10
32855502--32855555	28	1.9	28	85	7	74	25	12	18	42	1.86
32857642--32857776	25	5.4	23	77	12	90	26	19	21	32	1.97
32857643--32857816	50	3.5	50	85	4	208	28	19	21	30	1.97
32857659--32857800	25	5.7	25	87	1	187	26	20	21	30	1.98
32857681--32857834	75	2.1	75	81	2	175	28	19	22	29	1.98
32862513--32862560	18	2.5	20	86	10	64	72	4	18	4	1.17
32867483--32867777	102	2.9	102	90	0	448	30	25	15	28	1.96
32867484--32867777	51	5.8	51	78	5	308	30	25	15	28	1.96
32877089--32877137	24	2.1	23	81	11	55	46	12	18	22	1.82
32882204--32882262	26	2.3	25	82	11	66	37	5	10	47	1.59
32882224--32882274	26	2.0	25	81	11	59	35	5	11	47	1.65
32883414--32883461	15	3.2	14	81	18	53	70	0	18	10	1.15
32883424--32883463	15	2.6	16	85	14	57	70	0	20	10	1.16
32883427--32883467	16	2.5	17	84	11	50	70	0	19	9	1.14
32885698--32885750	26	2.0	27	85	3	72	28	20	20	30	1.98
32890833--32890865	16	2.1	16	88	11	50	60	0	21	18	1.36
32893207--32893231	5	5.0	5	100	0	50	20	0	0	80	0.72
32903875--32904231	183	2.0	183	92	0	597	28	4	35	31	1.77
32905280--32905393	27	4.2	28	82	7	130	40	23	14	21	1.90
32905561--32905663	26	4.0	26	80	0	98	18	20	26	34	1.95
32915613--32915654	16	2.7	15	79	20	50	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32916205--32916243	20	2.0	20	85	10	53	33	7	0	58	1.26
32919312--32919356	22	2.0	22	83	8	56	42	4	0	53	1.21
32930545--32930595	23	2.2	23	89	0	75	27	7	21	43	1.80
32931807--32931921	53	2.2	53	85	0	149	27	24	32	15	1.95
32936017--32936042	8	3.2	8	100	0	52	34	0	0	65	0.93
32943801--32943854	23	2.3	24	75	9	58	40	11	0	48	1.39
32944086--32944110	11	2.3	11	100	0	50	72	0	0	28	0.86
32946577--32946638	27	2.3	27	83	2	81	17	20	20	40	1.92
32955020--32955064	22	2.0	22	83	8	56	31	2	17	48	1.59
32958055--32958253	99	2.0	100	92	2	330	47	8	11	32	1.70
32962057--32962095	20	2.0	20	85	10	53	10	38	23	28	1.87
32962700--32962765	34	1.9	34	96	0	123	28	12	9	50	1.70
32963569--32963612	16	2.8	16	78	0	52	38	18	22	20	1.93
32966107--32966149	20	2.1	21	86	4	61	18	23	11	46	1.82
32966833--32966860	12	2.3	12	100	0	56	35	28	14	21	1.92
32970690--32971013	107	3.0	108	87	1	472	38	15	16	29	1.89
32994091--32994750	44	14.7	44	71	10	350	28	22	18	30	1.97
32994092--32994623	92	5.8	95	73	9	295	29	21	18	30	1.97
32994223--32994659	181	2.4	181	85	4	572	29	22	17	30	1.97
32994361--32994696	89	3.8	89	72	10	279	29	25	16	28	1.96
33000722--33000780	27	2.2	27	78	6	66	66	6	6	20	1.39
33000734--33000799	24	2.6	24	80	9	69	65	3	4	27	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33000874--33000941	27	2.6	27	83	2	75	70	4	2	22	1.18
33000734--33000926	26	7.1	26	65	16	70	62	5	4	27	1.36
33009506--33009560	23	2.4	22	80	17	58	23	7	7	61	1.47
33013281--33013415	67	2.0	67	97	0	252	17	19	30	33	1.94
33013968--33014069	27	3.8	27	82	8	111	38	18	19	23	1.93
33014006--33014260	54	4.7	54	87	1	280	32	18	24	24	1.97
33014033--33014260	27	8.4	27	85	3	307	32	18	24	24	1.97
33014033--33014261	81	2.8	81	89	3	345	32	18	24	24	1.97
33014279--33014369	24	3.8	24	88	0	137	26	7	18	47	1.75
33014453--33014517	27	2.4	27	85	14	91	18	24	24	32	1.97
33014471--33014523	27	2.0	27	85	7	72	20	26	22	30	1.98
33014564--33014731	32	5.3	32	82	3	196	23	17	18	39	1.92
33014560--33014716	64	2.5	64	87	0	233	23	18	18	39	1.92
33034502--33034540	17	2.2	17	86	4	51	53	5	2	38	1.37
33034536--33034636	40	2.6	38	81	12	116	48	8	2	39	1.50
33036257--33036306	26	1.9	25	84	8	64	36	18	8	38	1.80
33036545--33036582	9	4.1	10	83	16	55	21	18	0	60	1.36
33047765--33047945	50	3.6	50	90	0	281	25	24	30	19	1.98
33050841--33050867	4	6.8	4	100	0	54	74	0	0	25	0.83
33051983--33052503	258	2.0	259	99	0	1028	37	7	19	35	1.80
33052826--33052940	44	2.7	43	78	14	112	24	18	27	29	1.98
33058931--33058983	25	2.1	25	89	0	79	43	13	22	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33058938--33058988	25	2.0	25	92	0	84	39	13	21	25	1.90
33062452--33062533	36	2.3	36	83	8	96	15	12	30	41	1.84
33072457--33072500	23	1.9	23	95	0	79	40	9	18	31	1.81
33077385--33077417	11	2.9	12	86	13	52	33	0	0	66	0.92
33078838--33078900	30	2.1	30	84	0	81	58	14	3	23	1.50
33078930--33078972	22	2.0	22	85	0	59	58	11	11	18	1.63
33078937--33078977	11	3.7	11	80	0	55	56	9	14	19	1.66
33081895--33081960	21	3.2	21	67	16	66	31	9	24	34	1.87
33081892--33081974	40	2.1	40	97	0	157	34	9	21	33	1.86
33082048--33082082	15	2.3	15	90	0	52	71	8	2	17	1.23
33084396--33084483	44	2.0	44	93	0	149	21	31	20	26	1.98
33085497--33085538	21	2.0	22	90	4	68	73	0	11	14	1.09
33098947--33098999	26	1.9	29	88	11	85	56	9	15	18	1.65
33098987--33099024	20	1.9	20	89	10	60	50	10	15	23	1.75
33099139--33099163	8	3.1	8	100	0	50	76	0	0	24	0.80
33105123--33105187	20	3.2	20	74	8	60	40	15	20	24	1.91
33106736--33106773	18	2.1	19	85	9	53	50	0	7	42	1.31
33107163--33107232	27	2.7	26	84	4	79	20	24	25	30	1.99
33112331--33112425	37	2.6	37	98	0	181	43	15	6	34	1.73
33113896--33113952	30	1.9	30	82	7	71	10	14	0	75	1.05
33113921--33113962	14	3.0	14	80	19	52	4	16	0	78	0.91
33128037--33128105	33	2.1	34	94	2	122	43	14	7	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33137419--33137462	22	2.0	22	95	0	79	25	36	4	34	1.76
33159812--33159849	19	2.0	19	94	0	67	13	5	2	78	1.02
33161421--33161486	34	1.9	34	87	0	96	31	22	18	27	1.97
33164699--33164725	13	2.1	13	100	0	54	70	0	29	0	0.88
33171701--33171742	22	2.0	21	86	13	61	47	7	0	45	1.30
33171991--33172137	26	5.7	26	85	4	181	29	26	6	36	1.82
33172056--33172107	25	2.2	22	75	18	59	30	26	5	36	1.80
33171991--33172137	51	2.8	52	88	2	215	29	26	6	36	1.82
33176560--33176587	12	2.3	12	100	0	56	21	50	7	21	1.72
33183396--33183449	25	2.2	24	86	3	72	24	29	14	31	1.95
33183413--33183492	25	3.3	25	75	13	69	27	21	17	33	1.96
33194875--33194917	19	2.3	19	80	15	54	11	18	41	27	1.85
33195128--33195387	27	9.6	27	89	0	394	34	21	20	22	1.97
33195397--33195478	24	3.5	24	85	5	96	21	7	25	45	1.78
33195547--33195605	27	2.2	26	85	14	77	22	25	22	30	1.99
33195649--33195851	32	6.4	32	88	2	275	20	18	21	40	1.92
33195843--33195906	22	2.9	21	73	13	58	17	20	17	45	1.86
33205823--33205954	30	4.4	30	90	0	183	42	15	27	15	1.86
33208826--33208850	2	12.5	2	100	0	50	52	0	0	48	1.00
33209390--33209432	3	14.7	3	85	4	52	32	6	0	60	1.23
33210569--33210599	6	5.2	6	92	0	53	16	48	16	19	1.81
33212375--33212668	27	10.9	27	84	5	319	21	16	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33219679--33219715	17	2.2	17	90	0	56	27	24	5	43	1.76
33220507--33220553	22	2.1	22	84	0	58	46	17	17	19	1.84
33220594--33220643	26	1.9	26	91	0	82	38	26	20	16	1.92
33220631--33220694	27	2.4	27	85	12	80	31	23	25	20	1.98
33220780--33220845	24	2.8	24	90	0	105	48	22	3	25	1.65
33220886--33221460	27	21.3	27	86	1	697	20	17	21	40	1.92
33223438--33223513	13	5.8	13	87	0	98	32	7	25	34	1.85
33226465--33226509	19	2.4	19	84	0	63	31	2	2	64	1.18
33229597--33229656	13	4.6	13	85	8	86	33	5	23	38	1.76
33230551--33230599	15	3.4	15	71	21	50	55	4	2	38	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128