genome.fa.s12.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  38  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11803839--11804316	40	12.1	40	76	7	456	28	23	20	28	1.99
11803843--11804187	120	2.9	120	89	1	505	29	23	19	28	1.98
11805556--11805580	13	1.9	13	100	0	50	44	16	8	32	1.76
11809003--11809051	21	2.3	21	76	13	55	55	6	2	36	1.37
11809408--11809475	20	3.5	19	83	16	79	41	0	7	51	1.30
11815257--11815281	13	1.9	13	100	0	50	40	20	8	32	1.81
11817583--11817636	6	9.0	6	97	0	99	48	0	35	16	1.47
11821607--11821638	16	2.0	16	93	0	55	46	0	6	46	1.27
11821591--11822119	287	1.8	286	95	0	916	44	6	7	40	1.60
11830538--11830583	13	3.6	13	85	2	58	19	4	0	76	0.96
11841791--11841830	20	2.0	20	95	0	71	52	0	12	35	1.39
11847547--11847574	9	3.1	9	100	0	56	67	10	10	10	1.42
11857051--11857110	30	2.0	31	96	3	113	26	21	6	45	1.77
11858431--11858518	28	3.1	28	91	6	133	29	0	30	39	1.57
11858440--11858532	30	3.2	30	90	6	138	31	0	30	38	1.58
11859543--11859579	18	2.1	17	90	5	56	72	0	0	27	0.84
11862840--11862871	12	2.7	12	95	0	55	71	0	3	25	1.00
11863012--11863098	15	5.5	15	70	20	70	47	1	2	49	1.21
11863043--11863103	30	2.0	30	96	0	113	50	1	0	47	1.10
11874990--11875085	40	2.4	39	81	13	106	41	19	29	9	1.83
11875012--11875086	20	3.8	20	90	0	114	41	21	28	9	1.84
11880341--11880394	27	2.0	27	82	13	67	25	20	9	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11883403--11883505	29	3.4	29	77	12	98	23	15	24	36	1.93
11885593--11885637	19	2.6	17	86	10	56	62	0	0	37	0.96
11885604--11885647	19	2.2	20	92	4	72	65	4	0	29	1.12
11886598--11886632	18	1.9	18	94	0	61	68	0	0	31	0.90
11890634--11890664	9	3.4	9	90	0	53	25	12	22	38	1.90
11892439--11892511	29	2.6	29	76	10	69	38	6	8	46	1.60
11905850--11905971	40	3.0	40	100	0	244	34	20	19	25	1.96
11912570--11912640	36	2.0	36	94	0	124	42	16	19	21	1.89
11916264--11916323	23	2.6	22	82	7	66	41	8	8	41	1.65
11918240--11918283	21	2.2	20	83	4	52	31	0	13	54	1.39
11930319--11930462	20	7.2	20	75	3	128	35	18	31	15	1.91
11930314--11930462	40	3.7	39	82	1	181	36	17	30	15	1.91
11930314--11930464	80	1.9	80	85	0	212	36	17	30	15	1.91
11930306--11930452	60	2.5	60	75	4	161	34	18	32	14	1.91
11936792--11936885	46	2.0	46	93	0	161	31	27	3	37	1.73
11937885--11937922	19	2.1	18	85	14	51	52	10	0	36	1.36
11940009--11940055	24	2.0	24	91	0	76	23	21	6	48	1.72
11948248--11948291	20	2.2	20	91	0	70	50	18	20	11	1.77
11948213--11948336	60	2.1	59	80	8	144	41	13	27	17	1.87
11948268--11948371	40	2.6	40	83	3	129	37	13	28	20	1.90
11950614--11950659	21	2.2	21	88	0	65	21	15	39	23	1.92
11955227--11955266	18	2.2	18	100	0	80	35	0	22	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11955233--11955278	18	2.5	18	85	3	56	32	0	26	41	1.56
11963582--11963613	16	2.0	16	93	0	55	25	15	0	59	1.36
11968459--11968490	16	2.0	16	93	0	55	25	15	0	59	1.36
11968718--11968894	50	3.5	50	79	4	230	31	28	16	23	1.97
11968716--11968899	101	1.8	101	98	0	359	30	28	17	23	1.97
11975015--11975039	11	2.3	11	100	0	50	64	0	0	36	0.94
11976068--11976111	23	2.0	22	90	4	70	56	2	6	34	1.38
11976122--11976159	9	4.1	9	96	3	67	86	0	0	13	0.56
11976556--11976600	23	2.0	23	81	0	54	62	15	0	22	1.33
11976791--11976848	22	2.6	22	81	7	64	41	17	5	36	1.72
11977323--11977432	41	2.6	43	76	15	113	31	22	18	27	1.97
11977605--11977930	44	8.1	36	78	18	187	28	27	18	25	1.98
11977603--11977968	78	4.4	81	75	19	348	29	27	18	25	1.98
11977644--11977968	44	7.6	44	84	10	460	29	27	18	24	1.98
11977598--11977968	122	3.0	122	88	5	530	29	27	17	25	1.98
11977766--11977968	87	2.3	88	89	5	313	29	27	18	25	1.98
11979234--11979278	16	2.8	16	86	0	54	8	13	0	77	0.98
11980077--11980142	25	2.6	25	83	9	71	56	6	18	19	1.62
11984677--11984734	22	2.6	22	81	7	64	41	17	5	36	1.72
11991315--11991755	114	3.9	114	87	3	640	24	22	26	25	2.00
11991650--11992539	73	12.2	73	99	0	1737	27	24	24	23	2.00
11992969--11993314	147	2.4	147	95	0	613	44	13	17	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11993247--11993395	82	1.8	81	92	2	255	49	8	16	25	1.73
11993321--11993616	145	2.1	138	88	6	434	46	13	15	24	1.82
11993100--11993542	227	1.9	229	93	1	766	46	12	16	24	1.81
11995158--11995190	16	2.1	16	100	0	66	24	18	6	51	1.68
11995559--11995592	5	6.8	5	90	9	52	14	0	0	85	0.60
11995628--11995884	128	2.0	129	97	2	491	29	16	16	37	1.91
11999460--11999687	43	5.3	43	82	2	253	22	18	29	28	1.97
11999479--11999687	87	2.5	84	87	2	292	23	19	29	27	1.98
11999411--11999687	130	2.2	120	81	9	308	24	18	28	28	1.98
12007095--12007155	31	2.0	31	90	0	95	44	8	8	39	1.64
12012902--12012966	20	3.3	20	86	2	96	9	29	18	43	1.81
12012941--12013104	80	2.0	80	89	0	247	18	27	17	35	1.94
12012888--12013096	40	5.2	40	78	2	224	19	27	17	35	1.94
12014116--12014161	19	2.4	18	85	7	65	19	19	4	56	1.58
12020480--12020564	40	2.1	40	84	0	107	16	28	17	37	1.92
12033477--12033519	19	2.3	19	84	8	52	23	18	6	51	1.70
12037128--12037176	25	2.0	25	95	0	89	34	16	10	38	1.82
12037321--12037357	18	2.1	18	89	0	56	16	21	0	62	1.33
12041368--12041399	15	2.2	15	94	5	57	65	0	3	31	1.08
12057823--12057853	16	2.0	15	93	6	53	3	12	0	83	0.75
12061295--12061324	15	1.9	16	93	6	53	56	0	0	43	0.99
12066893--12066933	21	2.0	21	100	0	82	14	17	19	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12068413--12068446	15	2.3	15	89	0	50	64	14	11	8	1.49
12069424--12069534	42	2.6	42	79	0	123	22	32	20	24	1.98
12084878--12085218	169	2.0	170	93	1	576	37	9	33	20	1.84
12096366--12096466	51	2.0	51	90	0	157	28	16	25	28	1.97
12096363--12096793	123	3.4	122	77	10	466	31	17	24	27	1.97
12096582--12096650	36	1.9	36	93	0	120	28	23	20	27	1.99
12096480--12096731	138	1.8	138	86	1	371	32	17	21	28	1.96
12096803--12097234	89	4.8	88	82	4	407	31	18	20	29	1.96
12096780--12097155	133	2.8	132	74	5	371	31	17	21	28	1.97
12096780--12097362	44	12.9	45	72	8	362	32	18	20	28	1.96
12097075--12097332	96	2.7	96	90	2	416	34	19	18	27	1.95
12098931--12099043	3	38.3	3	72	7	70	30	5	3	60	1.36
12098933--12099037	29	3.6	30	78	11	94	30	5	3	60	1.38
12099038--12099214	88	2.0	89	98	1	347	23	10	6	59	1.54
12103248--12103331	42	2.0	42	95	0	150	38	21	1	39	1.61
12105323--12105364	9	4.8	9	88	5	68	54	0	2	42	1.13
12105323--12105364	17	2.4	18	84	8	68	54	0	2	42	1.13
12105408--12105447	21	1.9	21	89	0	62	52	2	2	42	1.28
12105433--12105493	31	1.9	32	83	3	79	60	6	3	29	1.38
12105874--12105926	10	5.3	10	77	8	54	24	0	1	73	0.93
12105884--12105926	20	2.2	19	91	4	68	25	0	0	74	0.82
12105891--12105933	19	2.2	20	83	4	52	32	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12106609--12106847	8	29.9	8	100	0	478	12	0	0	87	0.55
12106611--12106847	1	237.0	1	75	0	213	12	0	0	87	0.54
12110099--12110537	221	2.0	219	94	1	772	35	15	18	30	1.92
12111575--12111626	3	17.3	3	80	7	61	65	3	1	28	1.21
12111575--12111647	15	5.1	14	74	9	58	67	4	1	27	1.17
12112309--12112393	6	14.2	6	87	0	125	77	0	0	22	0.77
12112309--12112393	12	7.1	12	98	0	152	77	0	0	22	0.77
12113254--12114404	89	12.9	90	85	3	952	24	23	22	28	1.99
12113245--12114507	179	7.1	178	87	0	1217	24	23	22	28	1.99
12113388--12114237	45	19.0	44	68	11	296	24	24	22	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128