genome.fa.s12.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  103  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34449997--34450021	13	1.9	13	100	0	50	44	0	8	48	1.32
34455325--34455452	45	3.2	39	81	9	125	19	19	21	39	1.92
34455352--34455681	45	7.3	45	89	0	507	19	20	20	39	1.92
34458204--34458236	12	2.8	12	100	0	66	42	0	0	57	0.98
34459411--34459569	21	7.6	21	71	5	115	16	23	16	44	1.86
34459410--34459566	42	3.7	42	84	5	183	16	22	15	44	1.86
34473208--34473247	20	2.0	20	85	9	55	42	15	2	40	1.60
34475857--34475936	41	1.9	42	85	7	110	18	33	25	22	1.97
34481419--34481455	19	1.9	19	88	0	56	10	29	8	51	1.65
34488219--34488248	16	1.9	15	93	6	51	33	10	0	56	1.32
34489948--34489972	11	2.3	11	100	0	50	16	20	28	36	1.93
34490099--34490157	31	1.9	31	82	6	75	47	5	6	40	1.52
34493399--34493436	17	2.3	16	90	4	58	26	5	7	60	1.46
34494071--34494226	61	2.7	57	81	12	194	31	7	17	43	1.77
34499314--34499353	17	2.4	16	84	8	53	65	5	2	27	1.27
34500875--34501050	85	2.0	87	97	2	338	44	7	7	39	1.63
34501352--34501449	50	2.0	50	85	0	133	35	3	1	60	1.19
34501353--34501453	31	3.3	31	76	5	98	35	2	0	60	1.19
34520473--34520513	21	2.0	21	85	4	57	36	7	26	29	1.83
34522133--34522205	36	2.0	36	97	0	137	27	9	23	39	1.85
34525365--34525506	44	3.2	43	81	4	176	30	17	23	28	1.97
34525274--34525468	44	4.4	45	74	6	162	30	18	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34525276--34525513	89	2.7	89	83	5	282	30	18	22	28	1.97
34525366--34525495	45	2.9	44	82	2	170	30	17	24	27	1.97
34531788--34531841	26	2.0	27	85	3	74	44	0	14	40	1.46
34533659--34533919	50	5.2	49	75	5	128	24	25	14	34	1.94
34533710--34534031	100	3.2	97	75	8	272	25	26	14	33	1.95
34533834--34534018	99	1.9	99	82	6	232	25	25	17	31	1.97
34534163--34534289	58	2.2	58	81	2	150	19	22	21	36	1.95
34536300--34536338	20	2.0	20	90	10	62	20	48	20	10	1.78
34537441--34537480	3	13.0	3	94	5	71	32	2	0	65	1.06
34537818--34537853	18	2.1	17	89	5	54	13	5	8	72	1.27
34538189--34538571	114	3.4	114	95	1	675	32	15	21	31	1.94
34539023--34539080	22	2.6	22	71	13	55	53	3	0	43	1.17
34539059--34539104	16	2.9	16	84	9	67	58	0	0	41	0.98
34550971--34551009	19	2.2	17	86	9	51	53	7	0	38	1.30
34555600--34555628	13	2.1	14	93	6	51	58	13	0	27	1.36
34555816--34555954	46	3.0	45	90	4	208	29	25	9	35	1.87
34567462--34567532	35	2.0	35	97	0	133	35	14	19	30	1.91
34569843--34570080	42	5.7	42	94	0	377	43	18	21	16	1.88
34574572--34574598	2	13.5	2	100	0	54	48	0	0	51	1.00
34575136--34575160	13	1.9	13	100	0	50	28	0	16	56	1.41
34577222--34577252	16	1.9	16	100	0	62	51	6	16	25	1.68
34588159--34588201	20	2.2	20	95	0	77	23	0	18	58	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34588471--34588519	7	7.4	7	84	9	59	12	2	2	83	0.82
34588471--34588519	6	7.7	6	86	11	55	12	2	2	83	0.82
34589963--34590698	369	2.0	368	95	0	1310	24	17	23	34	1.96
34604800--34604830	15	2.1	15	93	0	53	32	16	6	45	1.72
34605615--34605649	18	1.9	18	88	11	54	31	37	14	17	1.89
34605662--34605691	15	2.0	15	93	0	51	16	50	13	20	1.78
34605670--34605817	63	2.3	63	78	6	156	20	37	18	23	1.94
34608637--34608668	15	2.2	15	94	5	57	31	3	0	65	1.08
34609961--34610233	136	2.0	137	99	0	539	41	10	7	39	1.68
34610259--34610283	5	5.0	5	100	0	50	40	0	0	60	0.97
34612335--34612365	15	2.1	15	100	0	62	19	12	29	38	1.89
34612817--34612872	21	2.7	21	91	0	94	25	8	37	28	1.86
34616525--34616601	39	2.0	39	97	0	145	22	15	6	55	1.62
34616912--34616978	30	2.2	30	100	0	134	38	11	0	49	1.40
34617505--34618046	273	2.0	273	97	0	1021	25	19	14	40	1.89
34620501--34620559	21	2.8	20	80	10	64	55	11	28	3	1.52
34624085--34624152	22	3.0	23	73	16	70	20	26	20	32	1.97
34624095--34624151	22	2.5	22	91	2	87	21	28	21	29	1.98
34634135--34634191	25	2.3	25	93	0	96	59	14	10	15	1.60
34636219--34636364	42	3.5	42	80	6	161	36	23	17	22	1.95
34636215--34636375	85	1.9	84	84	1	214	34	24	18	22	1.96
34637014--34637058	14	3.2	14	81	12	65	71	2	0	26	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34637528--34637561	6	5.7	6	85	0	50	44	32	23	0	1.54
34644622--34644684	32	2.0	32	93	0	108	39	26	11	22	1.87
34656939--34656967	14	2.1	14	100	0	58	37	6	27	27	1.82
34663151--34663186	16	2.2	16	100	0	72	25	0	36	38	1.56
34668198--34668773	91	6.3	91	100	0	1152	36	13	9	39	1.79
34669789--34670164	188	2.0	188	98	1	727	41	14	24	19	1.89
34671308--34671356	24	2.1	23	88	3	71	57	0	32	10	1.32
34671772--34671804	15	2.1	16	88	5	50	81	3	0	15	0.80
34671944--34671970	13	2.1	13	100	0	54	44	14	7	33	1.73
34672276--34672333	19	2.7	22	84	10	68	36	8	17	37	1.80
34672931--34672966	16	2.2	16	90	0	54	25	8	0	66	1.19
34675815--34675844	14	2.1	14	93	0	51	40	0	13	46	1.43
34675911--34675962	3	17.0	3	84	4	68	63	1	3	30	1.23
34680612--34680666	16	3.4	16	85	9	76	29	25	5	40	1.78
34680844--34680884	20	2.0	21	86	9	59	53	0	2	43	1.13
34680846--34680917	18	3.9	19	71	20	64	59	2	2	34	1.26
34687693--34687796	21	5.0	21	72	4	86	40	18	22	19	1.92
34731298--34731323	5	5.2	5	100	0	52	42	19	19	19	1.90
34737469--34737633	78	2.1	75	87	9	249	40	4	10	44	1.60
34737490--34737650	78	2.1	79	98	1	315	40	4	12	42	1.64
34740082--34740196	57	2.0	56	94	1	203	41	19	13	26	1.87
34746468--34746897	44	9.7	44	74	10	286	31	24	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34746474--34746897	89	4.8	89	75	5	356	31	24	16	27	1.96
34746474--34746901	133	3.2	133	90	0	658	31	24	15	27	1.96
34771634--34771715	42	2.0	42	87	0	119	12	21	21	43	1.85
34774030--34774095	25	2.7	25	84	11	75	22	24	3	50	1.63
34774101--34774259	33	4.7	34	72	11	130	27	22	17	32	1.97
34774089--34774394	101	3.0	100	85	3	391	28	23	16	32	1.95
34776315--34776358	11	3.8	11	82	11	61	61	0	0	38	0.96
34779115--34779157	22	2.0	21	86	4	59	58	2	2	37	1.24
34779965--34780025	20	3.2	19	79	6	61	55	4	3	36	1.38
34780994--34781048	25	2.2	25	83	3	65	32	3	0	63	1.12
34783438--34783986	98	5.5	95	77	16	489	42	14	14	28	1.84
34783437--34784035	195	3.0	194	81	11	676	41	14	14	29	1.86
34783441--34784039	294	2.0	302	87	6	871	42	14	14	28	1.85
34783438--34784036	99	6.0	98	79	13	593	41	14	14	29	1.85
34786022--34786088	29	2.3	29	77	10	75	58	8	2	29	1.44
34786485--34786798	96	3.0	99	84	10	339	32	13	13	40	1.83
34792043--34792231	25	7.9	25	72	16	168	40	0	14	44	1.45
34792030--34792231	70	2.9	71	95	3	356	39	0	14	46	1.45
34792408--34792768	23	14.7	23	75	16	284	50	22	3	23	1.64
34792416--34792485	34	2.1	34	100	0	140	48	28	0	22	1.51
34792453--34792768	74	4.4	73	86	7	359	50	21	3	23	1.65
34792796--34793013	115	1.9	116	91	5	361	40	9	8	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34796004--34796242	123	1.9	124	94	3	419	33	23	13	29	1.93
34799335--34799363	15	1.9	15	100	0	58	48	6	3	41	1.47
34799564--34799592	14	2.0	15	93	6	51	68	6	3	20	1.27
34801738--34801799	10	6.4	10	75	12	58	37	1	3	58	1.24
34801737--34801787	19	2.7	20	87	9	79	41	0	1	56	1.10
34801737--34801793	19	2.9	20	84	10	64	42	1	1	54	1.21
34802166--34802222	27	2.1	28	87	9	82	33	3	1	61	1.23
34802854--34802906	20	2.7	20	75	13	56	49	0	1	49	1.12
34807359--34807399	10	4.6	9	80	20	50	34	0	0	65	0.93
34807366--34807399	17	2.0	17	88	11	52	35	0	0	64	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128