genome.fa.s12.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  55  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17473778--17473876	35	2.8	34	80	7	108	20	1	43	35	1.59
17473776--17473858	7	11.6	7	74	8	51	22	0	43	33	1.54
17473773--17473858	21	4.0	22	69	11	70	22	0	41	36	1.54
17473997--17474126	57	2.3	56	81	7	138	21	0	41	36	1.53
17474057--17474124	7	9.6	7	87	7	84	23	0	45	30	1.53
17473997--17474126	28	4.6	27	76	13	102	21	0	41	36	1.53
17474038--17474129	22	4.3	22	82	10	102	20	0	43	35	1.52
17474038--17474129	43	2.1	43	82	11	109	20	0	43	35	1.52
17477090--17477137	9	5.3	9	82	9	62	47	25	0	27	1.52
17477096--17477157	18	3.4	18	77	16	74	50	20	0	29	1.49
17477090--17477146	27	2.1	27	96	0	105	49	22	0	28	1.50
17477090--17477160	27	2.6	27	91	4	99	49	21	0	29	1.50
17477173--17477248	39	1.9	40	94	2	136	35	15	9	39	1.80
17477387--17477433	12	4.2	12	76	15	55	46	19	2	31	1.61
17477385--17477480	21	4.7	21	74	10	90	45	17	1	35	1.56
17482155--17482205	21	2.4	21	90	6	77	35	17	45	1	1.60
17482464--17482620	44	3.7	42	79	10	149	31	19	27	22	1.97
17482587--17482640	25	2.2	25	89	0	81	31	22	25	20	1.98
17482595--17482645	25	2.0	25	96	0	93	31	17	25	25	1.97
17482554--17482687	67	2.0	67	88	2	198	28	20	25	26	1.99
17487356--17487381	4	6.5	4	100	0	52	23	0	26	50	1.50
17491583--17491662	37	2.1	38	84	11	103	33	22	1	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17491783--17491978	51	3.9	51	74	7	175	30	28	16	24	1.97
17495251--17495336	42	2.0	42	86	0	118	20	22	37	19	1.95
17502660--17502701	18	2.3	18	80	8	50	40	7	0	52	1.29
17502849--17502900	18	2.9	18	75	11	52	36	7	0	55	1.29
17502793--17502913	36	3.3	35	78	12	118	34	8	0	56	1.35
17502932--17502976	24	1.9	23	86	4	63	17	13	6	62	1.52
17505348--17505387	5	8.2	5	88	5	64	20	2	0	77	0.88
17505348--17505384	19	1.9	19	94	0	65	18	2	0	78	0.87
17505911--17506065	18	8.8	18	73	6	129	30	10	10	48	1.72
17505911--17506065	35	4.4	35	73	4	141	30	10	10	48	1.72
17505902--17506065	53	3.1	52	77	11	154	30	10	10	48	1.71
17507657--17507681	4	6.2	4	100	0	50	24	24	0	52	1.48
17511339--17511379	15	2.9	14	85	7	64	87	12	0	0	0.53
17511339--17511385	13	3.4	13	88	8	58	87	10	2	0	0.63
17511610--17512820	69	17.6	69	99	0	2404	24	14	20	40	1.90
17511664--17513134	69	20.7	77	94	1	403	25	14	20	39	1.91
17512768--17513134	79	4.7	77	81	6	389	26	16	21	35	1.94
17511664--17513456	138	12.6	150	90	5	724	25	15	20	38	1.91
17513076--17513197	64	1.9	64	91	0	199	30	18	24	27	1.98
17513140--17513405	74	3.5	74	93	2	424	25	16	21	36	1.94
17513140--17513456	74	4.2	74	89	4	406	25	16	21	36	1.93
17513647--17513686	5	8.2	5	86	5	55	17	2	2	77	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17513653--17513683	9	3.3	9	91	8	53	19	3	0	77	0.90
17514076--17514231	30	5.2	30	78	9	140	31	23	4	41	1.74
17514069--17514229	59	2.7	59	78	8	148	32	22	4	40	1.74
17514800--17514849	4	12.5	4	79	8	57	78	0	22	0	0.76
17514797--17514849	15	3.4	15	82	7	61	77	0	22	0	0.77
17514934--17514970	18	2.0	20	89	10	60	64	13	18	2	1.39
17515098--17515122	13	1.9	13	100	0	50	88	12	0	0	0.53
17515106--17515556	224	2.0	225	99	0	895	35	14	11	38	1.82
17515892--17515943	21	2.4	21	75	9	52	40	9	5	44	1.61
17515924--17516120	18	11.1	18	75	13	176	29	13	11	45	1.78
17515924--17516157	35	6.6	34	74	12	186	30	13	10	45	1.77
17515934--17516120	53	3.5	51	77	13	175	29	13	11	45	1.78
17515934--17516156	18	12.6	18	76	11	169	30	13	10	45	1.77
17517959--17517998	21	1.9	21	84	0	53	45	2	0	52	1.14
17518113--17518154	16	2.6	16	81	11	50	57	0	2	40	1.12
17521814--17521873	30	2.0	31	86	3	86	43	0	36	20	1.52
17530309--17530365	19	3.0	20	72	12	57	57	5	3	33	1.38
17532080--17532125	22	2.1	22	88	8	67	36	0	17	45	1.49
17533689--17533732	21	2.1	21	91	0	70	47	15	20	15	1.82
17539878--17539917	21	1.9	21	89	0	62	40	12	25	22	1.89
17542220--17542258	19	2.1	19	100	0	78	48	5	5	41	1.47
17542252--17542293	22	2.0	21	90	4	66	35	0	16	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17542573--17542625	25	2.2	24	83	10	63	16	22	22	37	1.94
17544454--17544574	42	2.9	42	84	0	134	14	24	17	42	1.87
17544507--17544601	42	2.3	42	83	0	118	15	26	16	41	1.89
17567750--17567793	20	2.2	20	87	0	61	47	0	52	0	1.00
17567747--17567792	24	1.9	24	90	0	74	47	0	52	0	1.00
17568698--17568739	19	2.1	19	86	8	57	57	4	4	33	1.41
17576839--17576905	34	2.0	34	82	5	82	25	22	22	29	1.99
17579347--17579398	26	2.0	26	96	0	95	34	21	3	40	1.71
17580542--17580566	13	1.9	13	100	0	50	40	48	0	12	1.40
17580547--17580663	39	3.0	38	90	3	189	51	26	2	19	1.60
17580733--17580808	9	8.4	9	82	0	80	28	6	18	46	1.74
17588536--17588574	19	2.1	19	95	0	69	71	5	0	23	1.05
17597347--17597391	20	2.2	20	84	7	56	46	2	17	33	1.61
17604466--17604517	12	4.2	12	72	13	52	53	1	1	42	1.23
17604468--17604520	20	2.8	19	81	18	67	54	1	1	41	1.22
17604503--17604578	36	2.1	34	88	7	107	53	3	3	38	1.38
17606547--17606577	9	3.3	9	95	4	53	41	0	0	58	0.98
17606844--17606875	15	2.1	15	94	0	55	43	0	21	34	1.53
17614007--17614109	41	2.5	41	88	1	145	25	16	25	33	1.96
17615879--17615954	37	2.1	37	89	0	116	43	22	14	19	1.87
17620490--17620536	24	2.0	24	86	0	67	12	10	23	53	1.70
17621692--17621865	30	6.0	28	77	10	147	32	24	6	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17621674--17621829	30	5.2	30	81	9	153	32	24	5	37	1.79
17621692--17621871	59	3.1	58	76	12	156	32	23	6	37	1.80
17622188--17622226	14	2.8	14	80	0	51	76	15	7	0	0.99
17622356--17622414	6	9.3	6	80	10	64	74	0	25	0	0.82
17622353--17622421	14	5.1	14	83	10	74	75	0	24	0	0.81
17622524--17622553	16	1.9	16	93	6	53	76	10	13	0	1.01
17622531--17622587	4	14.5	4	76	20	50	73	5	21	0	1.02
17622527--17622587	24	2.4	27	84	13	85	73	4	21	0	1.01
17622623--17622673	24	2.2	24	86	10	70	21	45	29	3	1.70
17622646--17622683	19	1.9	19	89	5	58	26	44	26	2	1.67
17622694--17622749	10	5.5	11	81	10	50	78	0	19	1	0.84
17622695--17622749	21	2.8	20	84	13	69	78	0	20	1	0.85
17622697--17622756	18	3.2	18	81	11	68	80	0	18	1	0.80
17623063--17623404	17	19.3	17	68	18	155	31	13	11	42	1.81
17623059--17623404	35	9.7	35	72	13	199	31	13	11	42	1.81
17623373--17623439	16	4.1	17	68	12	59	44	8	8	37	1.67
17623373--17623408	18	2.1	17	89	5	54	47	8	8	36	1.64
17629683--17629757	1	75.0	1	72	0	60	86	8	4	1	0.74
17629683--17629757	12	6.4	11	78	14	69	86	8	4	1	0.74
17629686--17629757	19	3.9	19	80	15	80	86	8	4	1	0.76
17629707--17629757	26	2.0	26	88	7	77	88	7	3	0	0.63
17629684--17629747	8	7.9	8	83	10	69	85	9	3	1	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17630630--17630829	75	2.6	75	81	6	208	28	16	22	33	1.95
17631044--17631162	30	4.0	30	82	8	131	33	25	5	36	1.78
17631044--17631218	30	6.0	29	75	11	128	33	24	6	36	1.80
17631564--17631602	14	2.8	14	80	0	51	76	15	7	0	0.99
17631732--17631790	6	9.3	6	80	10	64	74	0	25	0	0.82
17631729--17631797	14	5.1	14	83	10	74	75	0	24	0	0.81
17631923--17631968	4	11.5	4	82	13	51	73	2	23	0	0.94
17631907--17631968	32	2.1	28	88	11	88	70	4	24	0	1.06
17631922--17631972	24	2.0	27	88	11	81	70	3	25	0	1.04
17632003--17632053	24	2.0	26	88	7	79	21	43	29	5	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128