genome.fa.s12.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  5  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1542181--1542593	18	22.1	18	67	17	105	34	12	9	44	1.75
1542181--1542246	17	3.7	18	78	8	73	25	12	9	53	1.67
1542293--1542388	33	2.8	33	77	14	97	35	13	9	41	1.77
1542326--1542364	17	2.3	17	86	0	51	41	10	7	41	1.68
1542323--1542422	19	5.1	19	65	20	53	30	14	10	46	1.77
1542457--1542493	17	2.1	18	90	5	58	18	10	16	54	1.71
1542526--1542591	19	3.5	19	81	10	73	39	13	9	37	1.77
1542535--1542609	36	2.1	36	85	9	100	36	12	10	41	1.77
1548382--1548447	18	3.8	16	81	16	69	84	7	4	3	0.84
1548382--1548423	6	7.2	6	84	10	52	85	9	0	4	0.72
1548382--1548441	12	4.9	12	80	10	59	85	8	3	3	0.83
1549289--1549658	73	4.8	74	84	9	444	26	15	19	38	1.92
1549289--1549658	150	2.4	149	84	10	455	26	15	19	38	1.92
1549816--1550006	75	2.5	77	89	6	282	29	16	21	31	1.96
1551825--1551862	20	1.9	20	88	0	58	36	13	7	42	1.73
1551979--1552018	19	2.0	21	85	9	57	45	5	10	40	1.60
1552024--1552142	18	6.8	18	73	14	97	28	14	8	48	1.72
1552009--1552128	36	3.4	34	83	8	143	29	13	10	47	1.75
1552139--1552185	18	2.6	18	79	3	58	38	6	6	48	1.54
1552009--1552267	17	15.4	17	68	13	97	30	12	10	46	1.74
1552298--1552335	17	2.2	17	90	4	58	55	5	5	34	1.45
1552332--1552409	17	4.6	18	78	13	67	29	12	12	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1552339--1552412	18	4.3	18	76	13	84	32	12	10	44	1.76
1560443--1560474	12	2.7	12	100	0	64	28	15	15	40	1.88
1560694--1560847	57	2.7	57	79	4	168	37	18	12	30	1.89
1563030--1563171	56	2.5	57	76	5	144	38	18	11	30	1.87
1565059--1565104	23	2.1	21	84	8	56	30	6	4	58	1.43
1571394--1571493	24	4.3	24	71	14	68	54	6	5	35	1.47
1571467--1571513	19	2.4	20	85	3	60	55	8	2	34	1.42
1572473--1573534	530	2.0	532	94	1	1882	33	12	14	39	1.85
1574479--1574620	57	2.5	57	79	7	173	35	19	12	32	1.89
1579015--1579165	56	2.7	57	80	3	153	37	17	11	32	1.87
1579464--1579641	57	3.1	57	77	4	207	39	17	13	28	1.88
1589109--1589138	15	2.0	15	93	0	51	50	0	13	36	1.42
1595438--1595521	30	2.9	28	76	22	84	41	2	14	41	1.58
1596286--1596333	17	2.7	18	81	15	55	33	2	2	62	1.18
1602072--1602101	15	2.0	15	100	0	60	40	33	0	26	1.57
1604631--1604677	23	2.0	23	100	0	94	57	0	8	34	1.29
1611671--1611701	14	2.2	14	100	0	62	16	12	22	48	1.80
1615020--1615119	3	33.7	3	79	9	107	36	2	2	60	1.20
1615386--1615445	18	3.3	18	86	11	79	76	3	13	6	1.11
1615382--1615445	9	7.2	9	83	16	64	76	3	12	7	1.11
1615697--1615744	24	2.0	24	95	0	87	45	0	22	31	1.53
1616243--1616306	21	3.1	21	72	17	62	32	9	20	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1616759--1616859	45	2.2	45	87	3	141	20	17	19	41	1.90
1616840--1616887	6	7.7	6	84	11	53	20	18	16	43	1.88
1624408--1624555	56	2.6	58	75	11	162	37	18	13	31	1.89
1626136--1626175	11	3.5	11	83	6	53	32	0	2	65	1.06
1626132--1626176	12	3.8	12	79	5	56	33	0	2	64	1.06
1626794--1626827	15	2.3	15	89	0	50	44	0	20	35	1.52
1626800--1626829	15	2.0	15	100	0	60	46	0	13	40	1.43
1627048--1627089	20	2.1	20	86	0	57	28	4	0	66	1.12
1629543--1629593	25	2.0	25	100	0	102	23	31	11	33	1.91
1636161--1636235	38	2.1	36	80	14	84	34	12	12	41	1.79
1637780--1637933	56	2.7	57	77	2	175	37	19	11	31	1.88
1640806--1640849	6	7.0	6	85	10	61	34	0	0	65	0.93
1645050--1645108	26	2.3	25	82	5	64	37	3	0	59	1.14
1648205--1648248	23	1.9	23	100	0	88	36	27	2	34	1.70
1650241--1650346	49	2.1	49	87	5	151	47	20	14	17	1.83
1653382--1653549	86	2.0	86	96	0	309	40	29	11	18	1.85
1656657--1656690	6	5.7	6	100	0	68	17	67	0	14	1.23
1657066--1657132	34	1.9	35	87	3	100	31	8	14	44	1.76
1663660--1663692	17	1.9	17	93	0	57	51	0	42	6	1.26
1665524--1665578	26	2.1	27	96	3	103	54	7	14	23	1.65
1667519--1667566	24	2.0	25	91	4	80	33	12	14	39	1.84
1670354--1670447	49	1.9	49	86	4	136	38	9	9	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1671775--1671819	22	2.0	23	82	4	56	28	6	4	60	1.42
1673449--1673482	15	2.3	15	89	0	50	44	0	20	35	1.52
1673455--1673484	15	2.0	15	100	0	60	46	0	13	40	1.43
1676845--1676895	22	2.3	22	93	0	84	37	15	7	39	1.77
1676853--1676896	22	2.0	22	100	0	88	36	13	9	40	1.76
1678444--1678510	29	2.3	31	78	17	72	28	4	8	58	1.48
1679987--1680019	15	2.1	16	88	5	50	66	3	0	30	1.06
1683192--1683339	57	2.6	57	80	7	185	37	20	12	29	1.90
1684293--1684337	22	2.0	23	82	4	56	28	6	4	60	1.42
1685382--1685423	20	2.1	20	86	0	57	28	4	0	66	1.12
1686008--1686041	15	2.3	15	89	0	50	44	0	20	35	1.52
1686014--1686043	15	2.0	15	100	0	60	46	0	13	40	1.43
1691706--1691789	30	2.9	28	76	22	84	41	2	14	41	1.58
1697516--1697627	57	1.9	57	83	3	143	27	8	9	54	1.61
1703805--1703869	30	2.2	30	88	0	94	33	23	7	35	1.83
1709149--1709200	10	4.9	11	77	13	56	42	1	0	55	1.10
1709117--1709200	31	2.7	32	85	10	113	38	2	1	58	1.19
1709113--1709200	41	2.1	42	87	6	126	39	2	1	56	1.19
1711784--1711848	30	2.2	29	81	8	76	30	26	6	36	1.81
1711791--1711848	30	1.9	30	85	0	80	31	22	6	39	1.80
1719548--1719680	66	2.0	66	91	1	214	29	16	24	29	1.97
1720221--1720275	26	2.2	25	83	3	65	38	12	10	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1728440--1728479	20	2.0	20	85	0	53	42	2	7	47	1.45
1739138--1740336	606	2.0	591	95	2	2148	40	8	13	37	1.75
1740440--1740487	24	2.0	25	91	4	80	33	12	14	39	1.84
1746253--1746290	19	2.0	19	85	10	51	15	13	7	63	1.51
1746279--1746379	12	7.8	12	70	15	60	25	13	9	50	1.73
1746322--1746403	24	3.4	23	80	12	69	25	15	9	48	1.76
1749250--1749274	5	5.0	5	100	0	50	60	0	0	40	0.97
1749250--1749286	15	2.4	16	86	8	51	59	0	0	40	0.97
1754980--1755079	48	2.1	48	90	0	155	27	5	24	44	1.74
1758620--1758671	25	2.1	25	92	3	88	25	19	17	38	1.93
1759792--1759826	18	1.9	18	94	0	61	28	25	14	31	1.95
1763167--1763218	25	2.1	25	92	3	88	25	19	17	38	1.93
1767663--1767707	23	2.0	23	86	8	65	31	4	2	62	1.27
1772724--1772803	29	2.8	28	83	11	90	55	3	6	35	1.43
1774677--1774742	34	1.9	34	90	0	105	25	10	10	53	1.68
1796755--1796792	20	1.9	20	84	10	51	65	0	5	28	1.14
1801195--1801260	23	2.9	23	77	4	71	43	19	7	28	1.78
1801371--1801413	12	3.6	12	77	0	50	48	18	16	16	1.81
1801372--1801419	24	2.0	24	87	0	69	45	18	16	18	1.85
1805905--1805947	20	2.2	20	84	8	54	18	2	23	55	1.54
1807742--1807782	18	2.3	18	83	4	57	73	0	7	19	1.07
1807756--1807789	14	2.4	14	90	0	50	70	0	5	23	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1807910--1807954	23	2.0	23	86	8	65	62	13	0	24	1.31
1808517--1808581	14	4.8	13	75	17	53	66	3	3	27	1.22
1808517--1808582	20	3.3	19	69	14	53	65	3	3	28	1.23
1809444--1809480	14	2.6	14	100	0	74	18	13	51	16	1.76
1812379--1812512	66	2.0	66	95	0	241	23	29	10	37	1.88
1812934--1812977	21	2.1	21	91	0	70	11	11	27	50	1.72
1821021--1821197	87	2.0	88	98	1	347	49	4	9	36	1.55
1823078--1823113	18	2.1	17	89	5	54	0	41	52	5	1.24
1834917--1834986	23	3.0	23	93	0	122	44	8	11	35	1.71
1836157--1836182	11	2.4	11	100	0	52	65	19	0	15	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128