genome.fa.s12.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  56  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17632074--17632127	18	3.1	17	75	5	54	77	0	20	1	0.86
17632435--17632803	17	20.9	17	68	19	161	31	14	11	43	1.80
17632431--17632660	36	6.4	34	76	13	203	29	16	11	43	1.83
17632587--17632648	18	3.4	19	73	13	58	24	16	12	46	1.81
17633669--17634072	206	1.9	210	94	3	719	30	15	23	31	1.95
17639016--17639269	45	5.7	45	83	1	323	39	11	24	25	1.88
17639028--17639269	89	2.7	90	89	3	371	38	11	24	25	1.89
17642792--17642897	45	2.4	45	84	4	128	58	4	0	35	1.25
17643360--17643410	23	2.2	23	89	0	75	29	9	19	41	1.84
17648320--17648367	22	2.2	22	85	3	62	37	22	12	27	1.90
17649337--17649367	16	1.9	16	93	0	53	77	0	16	6	0.97
17649962--17650145	61	3.0	61	95	0	323	42	14	21	21	1.88
17657413--17657462	25	2.0	24	84	3	64	38	6	42	14	1.70
17657446--17657501	22	2.4	23	82	11	71	37	8	39	14	1.77
17657419--17657499	24	3.5	22	78	11	65	37	8	39	14	1.77
17661719--17661809	44	2.0	45	91	2	148	28	16	23	31	1.96
17667771--17667803	14	2.3	15	94	5	59	69	6	0	24	1.10
17671480--17671534	29	1.9	28	85	3	74	43	3	3	49	1.37
17671480--17671534	28	2.0	28	82	7	67	43	3	3	49	1.37
17675190--17675240	17	2.9	18	76	5	59	68	0	3	27	1.07
17675411--17675444	16	2.1	17	88	5	52	29	0	2	67	1.05
17680828--17680867	13	3.0	14	82	17	50	52	0	7	40	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17690165--17690235	37	1.9	37	91	0	115	15	15	30	38	1.89
17695975--17696035	27	2.3	27	82	0	77	34	14	22	27	1.94
17700692--17700717	10	2.6	10	100	0	52	46	11	7	34	1.69
17702032--17702083	3	17.3	3	100	0	104	0	32	0	67	0.91
17702112--17702152	19	2.2	19	95	0	73	34	9	29	26	1.88
17704109--17704143	17	2.1	16	89	5	52	57	0	0	42	0.99
17704293--17704353	24	2.6	24	86	2	79	55	3	6	34	1.42
17705629--17705669	15	2.6	16	85	14	59	17	0	12	70	1.16
17707603--17707696	25	3.8	25	81	5	102	37	20	20	22	1.95
17731766--17731931	83	2.0	83	95	0	296	42	21	5	31	1.75
17732674--17732703	12	2.5	12	94	0	51	56	0	0	43	0.99
17732868--17732972	41	2.5	41	87	1	147	26	25	19	28	1.98
17735713--17735758	22	2.0	22	84	12	58	63	2	2	32	1.19
17745392--17745424	15	2.2	15	94	0	57	57	6	24	12	1.57
17747207--17748076	435	2.0	435	100	0	1740	28	19	20	31	1.97
17748824--17748871	20	2.5	20	86	3	62	22	27	14	35	1.93
17754190--17754237	23	2.1	23	100	0	96	45	20	4	29	1.70
17754839--17754879	18	2.3	18	100	0	82	21	24	26	26	2.00
17766042--17766770	44	16.8	44	69	11	274	32	17	19	29	1.95
17765882--17766539	212	3.1	212	89	2	944	33	18	19	28	1.96
17765963--17766858	44	20.9	41	68	13	239	32	17	19	29	1.95
17766086--17766722	175	3.7	172	86	3	547	33	18	18	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17766472--17766873	219	1.8	219	90	2	646	32	17	19	29	1.95
17766297--17766722	175	2.4	175	96	0	771	33	18	18	29	1.94
17766964--17767206	44	5.6	44	76	1	238	30	20	23	25	1.99
17766961--17767219	87	3.0	87	92	0	419	30	20	24	24	1.99
17767006--17767366	44	8.3	42	69	12	178	29	22	23	24	1.99
17767093--17767366	131	2.1	130	85	6	365	29	22	22	24	1.99
17766963--17767284	174	1.9	174	81	5	400	29	22	23	24	1.99
17768980--17769022	18	2.5	17	80	3	50	41	4	4	48	1.44
17770613--17770684	20	3.6	20	80	0	72	8	31	26	33	1.86
17772469--17772493	5	5.0	5	100	0	50	80	0	0	20	0.72
17773415--17773450	18	2.0	18	100	0	72	16	38	33	11	1.84
17775939--17775977	19	2.0	20	85	5	53	33	7	5	53	1.51
17778966--17779025	29	2.1	28	84	9	77	48	0	0	51	1.00
17780086--17780128	21	2.0	23	86	9	63	44	0	13	41	1.44
17790967--17791000	17	1.9	18	88	5	52	58	8	26	5	1.51
17796240--17796353	43	2.6	43	81	4	113	31	19	16	32	1.94
17796276--17796428	45	3.5	44	79	5	130	28	24	14	32	1.94
17796316--17796430	45	2.6	45	81	2	142	27	26	12	33	1.92
17796316--17796472	45	3.5	44	79	4	136	28	24	12	34	1.92
17796370--17796488	44	2.7	44	81	6	132	29	22	15	32	1.94
17796571--17796950	44	8.5	44	75	10	234	28	21	19	30	1.97
17796612--17796966	44	7.9	44	75	11	265	28	21	19	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17797002--17797403	51	7.6	51	73	8	286	25	26	16	31	1.97
17796959--17797414	159	2.9	159	92	0	752	26	25	16	31	1.97
17797145--17797352	108	1.9	108	79	3	231	27	25	16	31	1.96
17797381--17797424	21	2.1	21	91	0	70	20	31	6	40	1.79
17797334--17797473	72	1.9	72	84	2	183	26	27	14	32	1.95
17797402--17797513	49	2.2	50	81	6	129	29	24	15	31	1.95
17797486--17797585	36	2.8	36	72	6	96	33	17	18	32	1.93
17799177--17799224	13	3.5	13	73	15	51	20	0	8	70	1.12
17799160--17799224	29	2.2	29	86	2	85	16	6	6	70	1.28
17800029--17800101	37	1.9	37	84	13	96	32	23	1	42	1.63
17800179--17800265	45	1.9	45	92	0	147	33	22	17	26	1.96
17800272--17800448	51	3.5	50	75	4	167	28	28	18	24	1.98
17805809--17805897	45	2.0	45	95	0	160	32	24	17	24	1.97
17807298--17807323	5	5.2	5	100	0	52	61	0	0	38	0.96
17818978--17819011	14	2.5	14	95	4	61	50	35	0	14	1.44
17820412--17820446	14	2.5	14	90	0	52	45	2	17	34	1.63
17821128--17821179	15	3.2	15	73	19	50	44	0	1	53	1.11
17825019--17825045	2	13.5	2	100	0	54	48	0	0	51	1.00
17827394--17827427	6	5.7	6	92	0	59	79	0	20	0	0.73
17827386--17827427	12	3.4	12	93	3	66	76	0	23	0	0.79
17827846--17827939	11	8.5	11	85	3	100	24	30	0	44	1.54
17831874--17832289	126	3.3	126	94	1	728	25	22	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17832322--17832603	96	2.9	96	82	5	336	40	17	2	39	1.65
17833060--17833099	21	1.9	21	84	0	53	2	17	2	77	0.99
17833056--17833099	15	2.9	15	83	6	52	2	15	2	79	0.93
17833559--17833625	34	1.9	35	84	3	91	46	13	8	31	1.74
17842274--17842445	83	2.1	83	95	1	308	34	10	14	40	1.80
17853242--17853414	57	3.1	53	65	20	136	26	8	2	63	1.37
17853311--17853339	8	3.6	8	100	0	58	24	10	0	65	1.23
17853242--17853483	115	2.1	114	97	2	457	24	9	3	62	1.40
17853426--17853454	8	3.6	8	100	0	58	24	10	0	65	1.23
17853527--17853559	12	2.5	13	90	9	50	36	0	0	63	0.95
17853625--17853693	3	22.7	3	78	8	50	30	4	4	60	1.35
17860102--17860590	44	10.8	45	73	11	277	31	16	21	30	1.95
17860379--17860550	91	1.9	90	89	4	265	29	16	22	31	1.96
17862311--17862347	15	2.3	17	86	9	51	24	2	0	72	0.97
17862455--17862520	26	2.6	24	79	15	71	31	6	6	56	1.48
17864689--17864718	5	6.0	5	100	0	60	60	0	20	20	1.37
17865762--17865838	29	2.6	29	77	4	73	49	15	11	23	1.77
17879164--17879246	33	2.5	33	90	0	121	45	10	14	28	1.78
17880013--17880065	22	2.4	22	100	0	106	20	18	28	32	1.97
17884294--17884428	42	3.2	42	83	8	168	45	19	19	15	1.85
17884290--17884428	21	6.6	21	72	4	93	46	19	19	15	1.85
17893315--17893407	26	3.4	28	74	16	86	33	23	17	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17900956--17901144	51	3.7	50	82	3	209	26	15	25	32	1.95
17906320--17906375	27	2.1	26	90	3	85	33	17	5	42	1.72
17906374--17906446	33	2.2	33	82	0	83	17	21	16	43	1.87
17906403--17906477	33	2.3	34	86	9	102	16	25	17	41	1.89
17906495--17906602	44	2.5	44	90	0	162	18	26	10	44	1.82
17908611--17908757	50	2.9	50	82	3	188	31	27	17	23	1.97
17926727--17926911	50	3.6	50	82	4	199	27	21	28	22	1.99
17928865--17928951	27	3.2	27	81	3	95	45	18	17	18	1.85
17938033--17938279	50	4.8	50	81	6	239	27	22	28	21	1.99
17940156--17940196	13	3.1	14	79	10	50	48	19	17	14	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128