genome.fa.s12.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  41  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12818617--12818721	27	3.9	26	73	14	97	36	18	1	43	1.61
12818619--12818731	13	8.4	14	70	13	60	34	17	1	46	1.59
12821135--12821186	23	2.2	25	82	6	63	17	3	5	73	1.19
12821204--12821261	24	2.4	23	83	8	71	36	6	5	51	1.51
12821217--12821264	24	2.0	24	92	8	80	35	4	6	54	1.45
12825565--12825616	23	2.2	25	82	6	63	17	3	5	73	1.19
12825634--12825691	24	2.4	23	83	8	71	36	6	5	51	1.51
12825647--12825694	24	2.0	24	92	8	80	35	4	6	54	1.45
12830700--12830739	6	6.8	6	94	5	73	85	0	15	0	0.61
12840613--12840766	34	4.5	35	71	7	93	33	31	6	27	1.82
12840995--12841019	9	2.8	9	100	0	50	60	32	0	8	1.26
12852900--12852940	19	2.2	19	95	0	73	31	19	9	39	1.84
12862202--12862286	34	2.5	34	79	9	91	37	32	5	23	1.79
12872706--12872868	87	1.9	87	85	5	231	23	18	22	34	1.96
12873730--12873782	25	2.2	24	90	6	81	16	13	9	60	1.58
12873739--12873782	11	3.7	11	77	16	52	15	13	9	61	1.56
12874281--12874319	20	1.9	21	84	5	53	69	2	7	20	1.26
12877539--12877583	24	1.9	23	86	13	65	37	0	2	60	1.09
12877759--12877800	16	2.6	16	92	0	66	42	7	2	47	1.43
12877774--12877828	22	2.5	22	84	0	74	43	1	1	52	1.22
12877813--12877841	6	4.8	6	100	0	58	34	0	0	65	0.93
12894831--12894870	19	2.1	19	100	0	80	40	5	27	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12897834--12898053	51	4.4	50	78	6	194	34	25	13	26	1.93
12897891--12897962	24	3.0	24	74	11	74	34	27	15	22	1.94
12897834--12898036	50	4.0	50	79	10	166	33	26	14	26	1.94
12897831--12898024	25	7.7	26	72	5	130	34	26	13	25	1.94
12904302--12904500	48	4.1	48	86	0	254	23	29	20	27	1.99
12905978--12906012	15	2.2	16	90	5	54	40	0	5	54	1.24
12905981--12906012	16	1.9	17	93	6	57	34	0	6	59	1.23
12913817--12913859	23	1.9	22	86	13	61	34	2	0	62	1.08
12916593--12916652	32	1.9	31	82	3	75	26	25	15	33	1.95
12917752--12917820	19	3.5	19	71	15	52	40	1	15	42	1.56
12919635--12919674	6	6.5	6	91	2	62	15	17	0	67	1.23
12923867--12924127	30	8.7	30	90	0	380	31	8	17	43	1.78
12924248--12924370	43	2.9	42	82	10	144	28	17	26	27	1.97
12928056--12928092	9	4.1	9	92	0	65	45	13	10	29	1.77
12928128--12928170	21	2.0	21	82	8	52	20	37	0	41	1.53
12928893--12928918	5	5.2	5	100	0	52	19	19	19	42	1.90
12935151--12935294	77	1.9	77	89	2	227	44	4	9	40	1.59
12980397--12980457	19	3.0	20	72	18	54	49	4	0	45	1.23
12980454--12980702	122	2.0	123	99	0	491	47	5	9	37	1.59
12984159--12984201	22	2.0	22	90	4	70	58	4	0	37	1.19
12984162--12984209	22	2.2	22	81	7	53	58	4	0	37	1.18
12987226--12987283	25	2.4	25	80	8	66	3	25	1	68	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13001007--13001055	22	2.2	22	100	0	98	16	10	34	38	1.82
13003944--13003983	20	2.0	20	90	0	62	42	22	27	7	1.80
13015305--13015370	30	2.2	29	82	12	73	54	6	6	33	1.50
13016670--13016820	75	2.0	75	89	0	230	34	15	9	41	1.79
13018626--13019039	186	2.2	184	90	2	643	30	8	17	42	1.80
13020869--13020911	3	14.0	3	90	4	59	30	0	4	65	1.13
13021300--13021331	16	2.0	16	100	0	64	18	18	6	56	1.62
13021401--13021702	108	2.8	109	97	0	570	28	16	19	35	1.93
13025314--13025439	44	2.8	45	74	10	116	26	22	19	31	1.97
13025505--13025603	44	2.2	44	91	3	155	26	25	21	27	1.99
13025537--13025669	44	3.0	43	83	6	144	27	22	19	30	1.98
13026140--13026439	85	3.4	86	73	16	299	29	22	19	29	1.98
13026174--13026511	181	1.9	181	93	1	534	27	23	18	30	1.98
13027864--13027920	5	11.8	5	80	12	66	0	15	0	84	0.63
13027862--13027920	26	2.4	24	86	8	82	0	16	0	83	0.66
13027864--13027920	20	2.6	21	89	10	80	0	15	0	84	0.63
13032292--13032321	2	15.0	2	92	0	51	46	0	3	50	1.18
13035234--13035261	3	9.3	3	100	0	56	64	0	0	35	0.94
13035836--13035876	15	2.7	15	88	3	55	31	2	0	65	1.05
13037273--13037306	15	2.2	16	89	5	52	44	0	11	44	1.40
13040361--13040399	19	2.1	19	85	0	51	33	23	10	33	1.88
13042141--13042294	45	3.4	45	78	6	159	33	22	16	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13042227--13042322	45	2.1	45	82	3	113	31	25	13	30	1.94
13042624--13042848	50	4.6	48	83	5	249	20	31	22	26	1.98
13042658--13042837	97	1.8	99	89	3	283	18	32	22	26	1.97
13045952--13046049	43	2.3	42	89	1	142	30	15	24	29	1.95
13045943--13046091	43	3.5	43	77	9	135	31	16	24	28	1.96
13054155--13054219	23	2.6	25	76	11	71	70	1	6	21	1.17
13055996--13056355	44	8.1	44	77	3	247	27	18	18	35	1.94
13056005--13056359	89	4.0	90	84	3	425	28	18	17	35	1.94
13061199--13061227	7	4.1	7	100	0	58	0	27	0	72	0.85
13068237--13068264	5	5.6	5	100	0	56	0	17	0	82	0.68
13069529--13069569	20	2.0	20	100	0	82	36	14	34	14	1.87
13069558--13069614	29	2.0	29	96	0	105	35	21	15	28	1.94
13070114--13070175	31	2.1	27	82	11	70	50	0	1	48	1.10
13070474--13070512	20	2.0	20	85	10	53	33	0	2	64	1.08
13072700--13072737	16	2.3	16	86	13	51	71	2	2	23	1.12
13072697--13072846	77	1.9	78	85	8	207	45	9	9	36	1.69
13082539--13082584	9	5.1	9	94	0	83	45	13	10	30	1.77
13082977--13083016	20	2.0	20	85	9	55	20	35	0	45	1.51
13083354--13083404	5	10.2	5	97	0	93	23	19	19	37	1.94
13088082--13088125	22	2.0	22	95	0	79	20	18	20	40	1.91
13088189--13088439	121	2.1	122	99	0	495	38	11	4	44	1.63
13088544--13088583	13	3.1	13	77	0	53	35	27	7	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13090281--13090314	16	2.1	16	100	0	68	23	0	38	38	1.55
13111381--13111418	17	2.3	17	86	4	51	63	5	0	31	1.17
13120482--13121996	702	2.2	703	86	2	2141	38	10	18	32	1.85
13120487--13121996	353	4.3	353	86	2	2060	38	10	18	32	1.85
13123779--13123833	25	2.2	25	77	6	58	36	0	20	43	1.52
13124209--13124263	18	3.0	18	87	10	76	50	0	25	23	1.49
13124209--13124282	19	3.9	19	81	8	80	50	0	24	25	1.50
13125705--13125743	19	2.1	19	100	0	78	30	15	5	48	1.66
13127264--13127333	25	2.8	25	97	0	131	21	21	22	34	1.97
13129378--13129588	69	3.0	68	91	2	314	44	18	10	25	1.83
13129383--13129572	24	8.2	23	70	8	107	45	19	9	25	1.80
13129580--13129622	7	5.5	8	86	10	54	51	16	0	32	1.45
13129580--13129622	16	2.8	17	83	16	58	51	16	0	32	1.45
13130419--13130566	41	3.6	41	85	0	188	32	25	20	20	1.98
13139239--13139366	41	3.0	41	77	8	132	32	26	15	25	1.95
13140241--13140296	28	2.0	28	86	6	78	48	3	1	46	1.30
13146118--13146160	18	2.3	19	88	8	61	41	0	2	55	1.12
13146246--13146279	9	3.8	9	84	0	50	23	2	17	55	1.55
13146247--13146284	18	2.1	18	90	0	58	28	2	13	55	1.51
13147637--13147673	2	18.5	2	100	0	74	0	48	0	51	1.00
13150141--13150177	17	2.2	17	100	0	74	72	0	5	21	1.04
13151038--13151345	130	2.4	128	91	2	492	23	19	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13151353--13151576	99	2.3	99	79	6	256	25	20	22	31	1.98
13151353--13151627	99	2.8	98	78	9	249	25	20	22	32	1.98
13151613--13151713	44	2.3	44	81	5	114	22	23	26	26	2.00
13151735--13151986	44	5.8	44	74	7	183	31	25	16	26	1.96
13151773--13151884	45	2.5	44	85	1	143	29	26	18	25	1.98
13151978--13152571	129	4.6	129	94	0	983	24	24	19	31	1.98
13154749--13154832	6	14.7	6	82	9	86	13	3	9	73	1.20
13154773--13154846	16	4.6	16	80	11	80	10	1	8	79	0.99
13154748--13154823	40	1.9	40	91	0	125	13	3	9	73	1.21
13154755--13154833	34	2.3	34	86	0	113	12	2	10	74	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128