genome.fa.s12.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  81  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26592399--26594331	966	2.0	966	100	0	3866	39	6	10	43	1.66
26595662--26595708	22	2.2	20	85	7	58	55	2	0	42	1.12
26596623--26596658	16	2.3	16	90	4	56	44	0	2	52	1.15
26598404--26601650	434	7.6	433	82	5	3754	35	13	15	35	1.87
26603136--26603182	22	2.0	23	88	8	69	21	6	0	72	1.07
26610961--26612003	94	11.3	94	82	4	1057	33	17	21	27	1.96
26611129--26611274	49	3.2	44	69	20	120	32	19	21	26	1.97
26611151--26611308	49	3.3	48	70	20	143	31	18	22	27	1.97
26610961--26612002	186	5.6	187	78	6	1059	33	17	21	27	1.96
26611807--26612057	94	2.7	94	83	1	252	34	16	21	28	1.95
26612282--26612311	5	6.0	5	100	0	60	60	40	0	0	0.97
26613688--26613712	8	3.1	8	100	0	50	12	0	0	88	0.53
26616999--26617081	3	28.0	3	81	2	96	63	3	3	28	1.28
26618565--26618706	50	2.8	50	76	0	140	27	20	22	29	1.98
26618566--26618890	172	1.9	172	82	5	415	24	20	24	29	1.99
26618926--26619257	44	7.6	43	68	17	184	27	25	19	27	1.99
26618915--26619278	131	2.8	131	92	1	595	25	25	19	29	1.99
26620643--26620712	9	7.9	9	79	10	74	0	17	0	82	0.66
26620646--26620712	15	3.8	18	80	15	86	0	17	0	82	0.68
26620643--26620712	18	3.8	19	83	7	83	0	17	0	82	0.66
26620644--26620722	33	2.5	31	86	8	90	1	15	1	82	0.80
26623559--26623610	19	2.7	20	82	5	63	46	11	17	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26625743--26625795	3	17.7	3	80	0	52	62	1	5	30	1.29
26628238--26629975	434	4.0	433	85	2	2157	35	14	15	35	1.88
26635209--26635270	31	2.0	31	83	3	79	53	3	8	35	1.47
26660097--26660157	7	8.4	7	77	13	52	39	0	0	60	0.97
26660093--26660169	30	2.6	29	82	15	88	38	0	0	61	0.96
26660102--26660166	14	4.6	14	71	9	51	38	0	0	61	0.96
26660089--26660169	15	5.3	15	68	20	53	40	0	0	59	0.98
26661799--26661870	36	2.0	35	84	10	92	55	1	4	38	1.28
26661804--26661887	9	9.2	9	71	18	50	60	1	3	34	1.21
26661839--26661885	17	2.6	18	81	18	62	63	0	4	31	1.13
26666985--26667050	32	2.1	32	100	0	132	25	13	15	45	1.83
26673578--26675174	798	2.0	798	96	0	2915	35	16	23	24	1.95
26679699--26679744	24	1.9	24	100	0	92	47	13	4	34	1.62
26711557--26711618	29	2.1	29	81	0	70	41	0	4	53	1.22
26711581--26711627	21	2.3	20	85	3	58	34	0	4	61	1.15
26713192--26713226	18	2.0	17	88	5	52	54	0	0	45	0.99
26713310--26713346	16	2.2	17	86	13	51	54	0	2	43	1.14
26713172--26713737	120	4.7	120	98	0	1078	46	5	3	44	1.42
26713430--26713466	16	2.2	17	86	13	51	54	0	2	43	1.14
26713550--26713586	16	2.2	17	86	13	51	54	0	2	43	1.14
26713650--26713829	91	2.0	92	86	3	256	46	3	3	46	1.37
26719872--26719935	22	2.9	22	78	2	65	37	4	31	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26723276--26723306	16	1.9	16	100	0	62	58	0	3	38	1.15
26723465--26723541	10	8.0	10	74	8	70	31	1	2	64	1.15
26723466--26723541	19	4.0	19	76	6	73	31	1	2	64	1.15
26723672--26723727	20	2.8	19	78	5	58	33	3	1	60	1.24
26726084--26726110	2	13.5	2	100	0	54	48	0	0	51	1.00
26726600--26726648	24	2.0	24	96	0	89	24	8	18	48	1.75
26726609--26726660	24	2.2	24	83	10	63	28	7	13	50	1.69
26726755--26726788	17	1.9	18	88	5	52	32	2	17	47	1.63
26728581--26728619	18	2.4	16	87	12	53	38	0	5	56	1.22
26732903--26732929	14	1.9	14	100	0	54	74	7	0	18	1.05
26736010--26736038	10	2.9	10	100	0	58	37	0	0	62	0.96
26736334--26736377	23	1.9	22	82	17	54	36	25	0	38	1.56
26736422--26736510	45	2.0	45	93	0	151	31	24	19	24	1.98
26736520--26736648	51	2.5	50	81	8	136	32	26	16	24	1.96
26736519--26736703	101	1.8	102	85	8	261	31	26	15	25	1.96
26737148--26737173	13	2.0	13	100	0	52	46	0	15	38	1.46
26750735--26750801	22	2.9	22	84	8	80	79	5	0	14	0.92
26750735--26750794	22	2.7	22	89	2	84	80	6	0	13	0.91
26750735--26750807	6	12.3	6	76	12	55	79	5	0	15	0.90
26750739--26750837	28	3.5	27	77	13	85	78	4	4	13	1.03
26750794--26750836	23	1.9	23	85	4	61	76	0	9	13	1.01
26750790--26750841	15	3.4	16	78	5	54	78	0	9	11	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26752423--26752490	35	1.9	35	93	0	118	48	8	19	23	1.76
26753066--26753737	44	15.3	44	62	6	167	26	24	26	22	2.00
26753572--26753781	44	4.8	43	68	12	140	23	24	29	22	1.99
26753065--26753822	88	8.6	88	88	0	1012	25	24	26	22	2.00
26753855--26754151	44	6.8	44	80	9	317	28	19	25	26	1.99
26753857--26754065	84	2.4	85	89	3	312	27	19	26	26	1.99
26753857--26754151	88	3.4	87	86	4	359	28	19	25	26	1.99
26753938--26754197	132	2.0	132	78	6	276	30	19	25	25	1.98
26754229--26754614	88	4.4	88	86	0	495	25	24	26	23	2.00
26754455--26754593	44	3.2	44	66	15	115	25	25	24	25	2.00
26754636--26754718	43	1.9	44	90	2	132	25	22	28	22	1.99
26754685--26755064	44	8.8	44	70	14	148	30	19	22	26	1.98
26754812--26754926	40	2.8	40	85	3	142	29	21	20	27	1.98
26754640--26755011	44	8.6	43	73	13	157	28	20	24	26	1.99
26754770--26755175	213	1.9	213	82	6	509	29	19	22	27	1.98
26754639--26755159	257	2.0	253	85	4	697	29	19	23	26	1.98
26755105--26755202	44	2.2	45	81	5	110	29	18	27	24	1.98
26756113--26756137	13	1.9	13	100	0	50	68	0	32	0	0.90
26760263--26760338	37	2.1	38	82	9	95	23	22	19	34	1.97
26763952--26763999	8	6.1	7	81	15	51	66	2	0	31	1.03
26763952--26763999	15	3.1	14	80	19	51	66	2	0	31	1.03
26763952--26764016	16	3.9	16	84	11	78	64	3	0	32	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26769862--26769902	14	2.9	15	82	17	52	43	7	12	36	1.70
26781440--26781482	19	2.3	19	84	8	52	67	2	13	16	1.33
26786143--26786239	45	2.2	45	86	0	140	23	23	20	31	1.98
26786247--26786670	217	1.9	218	87	1	618	28	24	17	29	1.97
26786116--26786628	44	11.7	45	67	13	137	27	23	19	30	1.98
26798491--26798572	35	2.3	35	93	0	137	57	4	3	34	1.38
26798555--26798634	28	3.0	27	82	7	101	62	3	0	33	1.13
26801441--26801498	22	2.6	22	81	7	64	41	17	5	36	1.72
26801477--26801551	19	3.8	19	86	6	114	37	14	9	38	1.79
26801488--26801550	21	3.1	21	84	9	94	39	12	7	39	1.73
26804253--26804614	180	2.0	180	100	0	724	33	17	14	34	1.90
26804780--26804942	24	6.6	25	66	15	81	38	19	24	17	1.93
26815685--26815724	20	2.0	20	90	0	62	25	10	2	62	1.39
26817971--26818004	13	2.7	12	86	13	50	79	0	0	20	0.73
26817971--26818004	6	5.3	6	89	10	50	79	0	0	20	0.73
26818902--26818930	3	9.7	3	100	0	58	68	0	0	31	0.89
26819293--26819336	23	1.9	23	85	0	61	13	22	36	27	1.92
26824831--26824866	18	1.9	19	88	5	56	50	38	5	5	1.49
26825196--26825239	14	3.3	14	84	6	56	18	2	0	79	0.83
26825198--26825240	18	2.4	18	84	3	52	20	2	0	76	0.89
26838260--26838677	51	8.5	50	74	13	341	28	16	24	29	1.97
26838269--26838516	97	2.6	96	84	5	329	27	17	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26838321--26838674	147	2.4	147	89	1	548	29	16	24	29	1.97
26838469--26838650	96	1.9	97	81	5	226	29	18	23	29	1.97
26839450--26839486	14	2.7	15	88	12	53	24	5	0	70	1.08
26839506--26839567	26	2.4	26	97	0	115	43	9	14	32	1.78
26845173--26845308	71	1.9	71	89	0	209	25	27	18	28	1.98
26845560--26845690	48	2.7	48	88	2	192	35	19	6	38	1.77
26845942--26846065	49	2.5	48	80	7	126	30	29	12	26	1.93
26853215--26853382	83	2.0	84	97	2	320	32	11	9	46	1.72
26862333--26862372	19	2.1	19	100	0	80	50	20	0	30	1.49
26864757--26864817	24	2.5	25	84	7	72	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128