genome.fa.s12.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  40  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12514940--12514987	18	2.6	17	83	9	51	20	10	0	68	1.18
12518016--12518078	31	2.0	31	100	0	126	38	28	15	17	1.91
12525873--12525939	28	2.4	28	75	18	77	31	22	22	23	1.98
12525950--12526016	29	2.2	31	86	7	93	40	14	16	28	1.88
12526410--12526608	27	7.4	27	89	0	247	17	19	22	41	1.90
12526410--12526608	81	2.5	81	87	2	285	17	19	22	41	1.90
12528689--12528770	33	2.5	33	84	2	94	19	43	17	19	1.88
12532544--12532601	29	2.0	29	96	0	107	32	31	13	22	1.93
12536799--12536974	57	3.1	57	90	1	271	26	19	6	47	1.74
12538063--12538135	37	2.0	37	83	0	92	19	6	30	43	1.76
12542472--12542524	26	2.0	27	88	3	81	30	22	20	26	1.98
12546529--12546611	43	1.9	43	82	4	105	24	26	4	44	1.73
12547847--12547879	16	2.1	16	100	0	66	51	12	6	30	1.63
12551176--12551205	15	2.0	15	93	0	51	53	10	6	30	1.60
12552389--12552476	42	2.1	43	91	6	144	26	26	2	45	1.65
12557138--12557184	21	2.2	21	100	0	94	25	8	25	40	1.84
12561009--12561043	3	11.7	3	93	0	61	65	0	31	2	1.07
12561615--12561839	105	2.2	104	81	6	269	30	15	21	32	1.94
12561639--12561838	105	1.9	105	87	4	296	31	15	20	33	1.93
12561816--12562629	69	11.8	69	76	5	536	28	17	25	28	1.97
12561812--12562629	138	5.9	138	77	3	619	28	17	25	29	1.97
12563084--12563116	13	2.5	13	100	0	66	27	21	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12573257--12573352	48	2.0	48	100	0	192	27	14	10	47	1.76
12574616--12574712	48	2.0	48	89	0	149	30	6	21	41	1.78
12574664--12574852	91	2.1	91	83	5	240	29	6	20	43	1.78
12575620--12575783	43	3.8	43	87	1	240	28	26	18	26	1.98
12575620--12575783	85	1.9	85	88	0	247	28	26	18	26	1.98
12575727--12575847	59	2.0	61	96	3	228	23	31	19	26	1.98
12578510--12578539	13	2.3	13	100	0	60	56	13	13	16	1.67
12578548--12578590	20	2.2	20	100	0	86	41	20	4	32	1.73
12579456--12579504	9	5.4	9	85	9	64	30	6	0	63	1.19
12579444--12579504	9	7.1	9	73	15	58	31	4	0	63	1.15
12579601--12579771	89	1.9	89	85	4	238	43	28	1	27	1.62
12579725--12579799	7	11.0	7	76	11	57	34	46	1	17	1.56
12579725--12579799	13	5.5	14	69	12	57	34	46	1	17	1.56
12579759--12579802	21	2.1	21	91	0	70	31	45	0	22	1.53
12579674--12579906	110	2.1	110	84	7	296	40	31	1	26	1.64
12579896--12579932	7	5.6	7	87	12	60	32	51	0	16	1.45
12579881--12579932	26	2.0	26	84	0	68	32	46	0	21	1.52
12579969--12580002	15	2.3	15	90	5	52	35	29	0	35	1.58
12581675--12582169	148	3.4	148	93	1	834	25	15	14	44	1.84
12582137--12582625	114	4.3	113	90	3	655	26	25	22	25	2.00
12582693--12582718	12	2.2	12	100	0	52	46	30	15	7	1.74
12588744--12588777	7	4.9	7	96	0	59	44	14	0	41	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12589302--12589330	2	14.5	2	100	0	58	51	0	0	48	1.00
12591640--12591715	26	3.0	25	80	5	80	34	23	21	21	1.97
12595280--12595309	14	2.1	14	100	0	60	43	13	13	30	1.82
12598463--12598493	9	3.4	9	90	0	53	25	12	22	38	1.90
12600611--12600653	9	4.8	9	85	0	50	23	30	0	46	1.52
12600588--12600644	18	3.2	18	80	9	62	24	35	0	40	1.56
12603384--12603508	43	2.9	43	81	12	148	32	28	18	20	1.96
12612704--12612750	19	2.4	20	89	3	69	12	6	23	57	1.58
12616521--12616869	185	1.9	184	90	1	556	26	16	19	37	1.92
12629591--12629905	148	2.1	148	100	0	630	37	7	26	28	1.83
12644796--12644852	20	2.9	21	74	12	66	49	0	5	45	1.24
12648013--12648057	2	22.5	2	100	0	90	0	48	0	51	1.00
12653177--12653207	2	15.5	2	93	0	53	45	0	3	51	1.17
12659318--12659358	9	4.6	9	90	0	64	46	14	12	26	1.80
12659313--12659358	18	2.6	18	96	0	83	45	13	10	30	1.77
12659397--12659436	20	2.0	20	85	5	53	22	37	0	40	1.54
12659637--12659739	9	11.4	9	86	0	134	41	21	10	26	1.85
12660137--12660195	30	2.0	30	86	6	84	20	38	0	40	1.53
12665360--12665411	23	2.3	23	100	0	104	59	7	0	32	1.26
12677149--12677219	34	2.1	34	97	0	133	54	18	1	25	1.51
12679968--12680014	2	25.5	2	76	23	50	46	2	0	51	1.13
12681269--12681474	102	2.0	103	99	0	405	37	14	11	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12685428--12685520	44	2.1	44	84	13	120	34	3	25	36	1.72
12686707--12686766	30	2.0	30	100	0	120	46	16	20	16	1.84
12688540--12688627	29	3.3	29	70	23	84	50	4	23	21	1.67
12688809--12688848	18	2.2	18	95	0	71	52	2	37	7	1.43
12696595--12696621	13	2.1	13	100	0	54	70	0	7	22	1.12
12696739--12696797	10	5.7	10	74	20	50	67	3	0	28	1.06
12697318--12697422	10	10.7	10	74	11	74	33	1	3	60	1.25
12697327--12697409	9	8.7	9	73	16	60	33	2	2	61	1.22
12697326--12697429	19	5.2	20	74	12	72	31	1	3	62	1.24
12697493--12697566	30	2.4	31	84	8	89	29	0	8	62	1.24
12697577--12697623	19	2.5	19	86	6	60	17	8	0	74	1.05
12697577--12697634	18	3.1	19	82	12	66	18	8	0	72	1.10
12710275--12710318	17	2.6	17	85	10	63	63	4	0	31	1.14
12710280--12710673	98	4.0	98	80	10	448	57	15	0	26	1.44
12710600--12710767	92	1.9	90	85	9	236	54	17	0	27	1.47
12710514--12710773	98	2.7	95	81	9	273	56	15	0	26	1.42
12711143--12711218	28	2.7	28	91	0	125	44	3	7	43	1.51
12717081--12717172	48	1.9	48	86	0	130	26	9	15	48	1.75
12720148--12720266	44	2.7	44	77	10	118	28	24	21	26	1.99
12724053--12724235	60	3.1	60	80	5	167	22	16	17	42	1.89
12724847--12724877	6	5.2	6	92	0	53	51	0	48	0	1.00
12725123--12725498	189	1.9	196	85	7	527	28	0	14	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12725123--12725498	95	3.9	98	84	7	475	28	0	14	56	1.43
12725475--12725507	16	2.0	17	94	5	59	36	0	6	57	1.23
12727823--12727985	75	2.2	76	89	1	247	28	7	11	52	1.64
12729641--12729694	23	2.4	23	78	12	58	64	5	0	29	1.16
12733209--12733296	27	3.3	27	83	0	113	29	23	28	18	1.98
12736506--12736563	9	6.0	9	78	13	62	63	3	0	32	1.11
12736506--12736563	10	5.9	10	79	4	57	63	3	0	32	1.11
12738605--12738633	14	2.0	15	93	6	51	27	0	20	51	1.47
12738936--12738968	15	2.2	15	100	0	66	81	6	6	6	0.97
12739776--12739891	43	2.7	43	81	5	128	25	18	27	27	1.98
12754332--12754405	34	2.2	34	90	0	112	20	8	31	40	1.81
12756283--12756411	41	3.1	41	79	2	123	33	24	20	22	1.97
12758224--12758249	13	2.0	13	100	0	52	15	15	0	69	1.20
12758234--12758354	57	2.1	58	90	4	192	24	23	4	46	1.72
12759723--12759769	14	3.4	14	79	8	51	51	4	2	42	1.33
12768317--12768542	59	3.7	59	77	11	254	34	13	16	35	1.89
12768355--12768652	69	4.5	69	79	8	364	32	14	18	35	1.90
12768313--12768604	128	2.3	128	98	0	566	33	14	16	35	1.89
12768569--12768818	106	2.4	106	89	0	383	34	18	15	32	1.92
12780925--12781000	15	4.9	15	77	4	62	53	13	7	25	1.65
12780925--12780985	16	3.9	16	72	12	54	55	11	8	24	1.62
12782593--12782646	26	2.1	26	100	0	108	42	16	7	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12785552--12785626	25	2.9	26	79	15	93	42	10	13	33	1.78
12787770--12787910	25	5.6	25	74	18	116	29	21	24	24	1.99
12787770--12787907	50	2.8	50	80	12	160	28	21	24	24	1.99
12792167--12792279	25	4.5	25	74	14	99	32	23	20	23	1.98
12798614--12798702	20	4.5	19	70	18	74	41	21	26	10	1.85
12812671--12812703	16	2.1	16	94	0	57	54	0	0	45	0.99
12813587--12813628	18	2.3	18	88	12	59	61	0	0	38	0.96
12816950--12816996	16	3.0	16	84	6	60	8	0	46	44	1.33
12818618--12818707	13	6.7	14	75	16	66	36	17	2	43	1.62
12818617--12818721	40	2.6	39	89	5	165	36	18	1	43	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128