genome.fa.s12.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  73  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23729547--23729729	100	1.8	100	92	4	316	20	31	21	25	1.98
23731156--23731307	78	1.9	78	83	0	196	19	13	28	39	1.89
23731156--23731307	26	5.8	26	79	1	171	19	13	28	39	1.89
23731159--23731326	26	6.5	25	77	5	147	20	13	28	37	1.90
23731148--23731326	52	3.4	52	83	4	218	20	13	29	36	1.91
23731161--23731326	78	2.1	78	80	2	181	21	13	28	36	1.91
23735200--23735244	10	4.5	10	100	0	90	62	8	0	28	1.25
23738951--23739084	41	3.3	40	79	12	146	33	11	28	26	1.92
23739026--23739084	20	2.9	21	68	14	59	27	11	33	27	1.92
23742455--23742546	19	4.8	19	93	0	157	38	15	8	38	1.78
23742432--23742546	38	2.9	38	92	5	176	39	15	7	37	1.77
23743192--23743302	44	2.5	42	80	9	123	30	18	19	30	1.96
23743230--23743389	44	3.6	45	74	18	115	27	24	18	29	1.98
23743141--23743535	217	1.8	217	89	1	630	27	22	20	29	1.98
23743883--23744004	44	2.8	44	84	9	151	28	24	18	27	1.98
23743971--23744329	88	4.1	88	88	0	378	20	24	27	27	1.99
23744081--23744312	44	5.3	44	64	6	128	19	25	30	24	1.98
23743971--23744329	176	2.0	176	84	1	468	20	24	27	27	1.99
23744020--23744163	45	3.2	45	65	3	112	18	25	27	29	1.98
23750000--23750057	14	3.9	14	80	10	53	79	8	1	10	1.01
23750192--23750238	16	2.7	17	80	9	51	53	6	6	34	1.52
23750807--23750902	19	4.8	19	89	5	129	39	16	7	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23761745--23761821	27	2.9	27	82	0	91	27	19	24	28	1.99
23769239--23769272	16	2.0	18	88	11	54	47	5	5	41	1.52
23774513--23774591	27	2.9	27	78	0	95	29	20	13	36	1.91
23778575--23778617	17	2.4	18	81	14	54	62	4	4	27	1.35
23780254--23780759	45	11.7	44	69	11	183	26	26	18	28	1.98
23780348--23780716	44	8.6	44	66	17	204	27	24	19	28	1.98
23780300--23780767	216	2.2	216	91	0	740	27	25	18	28	1.98
23780574--23780732	82	1.9	82	87	2	230	27	22	20	30	1.98
23793219--23793261	17	2.4	18	81	14	54	62	4	4	27	1.35
23794591--23794626	6	5.7	6	87	12	54	16	0	33	50	1.46
23794594--23794637	20	2.2	20	83	0	52	20	0	31	47	1.50
23803631--23803657	2	13.5	2	100	0	54	0	48	0	51	1.00
23805007--23805495	244	2.0	245	99	0	971	39	11	8	40	1.72
23806341--23806610	114	2.4	113	80	7	271	28	18	17	35	1.94
23807030--23807083	27	2.0	27	82	7	65	18	0	31	50	1.48
23807074--23807128	21	2.6	20	80	11	65	12	0	43	43	1.42
23809427--23809568	69	2.0	70	98	1	277	19	8	22	50	1.74
23809667--23809739	21	3.3	21	68	29	62	28	4	6	60	1.41
23816494--23816545	21	2.5	20	87	6	68	38	15	44	1	1.58
23816940--23817122	43	4.3	43	75	6	156	26	18	24	30	1.98
23819410--23819455	16	3.0	15	90	9	67	32	2	0	65	1.05
23819542--23819634	47	2.0	47	97	0	177	37	8	3	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23821701--23821730	6	5.0	6	95	0	51	20	16	16	46	1.84
23823766--23823804	9	4.3	9	90	0	60	28	7	28	35	1.85
23823775--23823815	18	2.3	18	86	0	55	26	12	24	36	1.91
23823758--23823815	27	2.1	27	83	0	71	29	10	24	36	1.88
23823813--23823960	73	2.0	74	97	2	280	44	13	9	32	1.76
23826594--23826720	62	2.1	58	88	5	182	49	4	4	40	1.45
23830841--23831030	3	63.3	3	100	0	380	66	0	0	33	0.92
23831503--23831776	53	5.7	53	69	24	246	48	7	4	39	1.51
23831570--23831723	40	3.5	40	68	23	121	49	7	3	38	1.50
23831575--23831715	33	4.5	33	67	16	118	48	7	4	39	1.52
23831517--23831793	93	3.0	93	98	0	527	48	7	4	39	1.51
23831604--23831756	44	3.4	44	75	18	177	47	5	5	41	1.50
23831642--23831692	16	2.8	19	67	27	56	50	11	0	37	1.39
23831838--23831897	22	2.6	23	86	5	77	50	1	3	45	1.28
23837366--23837403	19	2.0	20	89	5	60	68	2	0	28	1.03
23837370--23837398	15	1.9	15	100	0	58	68	3	0	27	1.05
23838324--23838548	40	5.6	40	84	0	279	19	28	18	33	1.96
23838327--23838548	120	1.9	120	92	1	374	19	27	18	33	1.96
23842400--23842455	20	2.8	20	72	8	60	33	21	26	17	1.96
23843965--23844018	16	3.4	16	89	0	81	37	5	33	24	1.79
23853635--23853666	14	2.3	14	94	0	55	28	34	28	9	1.88
23857462--23857539	26	3.0	26	81	7	79	20	17	20	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23865455--23865495	3	13.7	3	84	0	55	36	0	36	26	1.57
23868793--23868837	5	9.0	5	100	0	90	40	40	0	20	1.52
23871461--23871570	54	2.0	54	85	5	150	25	8	15	50	1.71
23873637--23873831	5	39.0	5	100	0	390	40	40	0	20	1.52
23876441--23876550	54	2.0	54	85	5	150	25	8	15	50	1.71
23881816--23881869	9	6.2	9	89	6	85	33	20	11	35	1.88
23881815--23881868	17	3.2	17	89	7	83	35	20	11	33	1.88
23881816--23881869	26	2.1	26	96	0	99	33	20	11	35	1.88
23881866--23881907	21	2.2	18	75	25	50	28	4	7	59	1.44
23882522--23882551	13	2.3	13	94	0	51	20	6	13	60	1.55
23882537--23882699	44	3.5	44	85	13	229	21	3	31	44	1.68
23882601--23882699	51	1.9	51	97	0	189	20	3	33	43	1.67
23884578--23884741	43	3.8	42	79	4	159	31	26	17	24	1.97
23893436--23893536	49	2.1	49	88	0	148	55	12	13	17	1.69
23895099--23895149	26	1.9	27	92	4	86	31	21	19	27	1.97
23900541--23900575	16	2.2	16	94	0	61	45	11	5	37	1.64
23901736--23901800	29	2.2	30	83	8	80	58	0	6	35	1.23
23904483--23904544	29	2.1	29	84	0	79	22	22	20	33	1.97
23905677--23905933	92	2.8	92	92	2	414	47	12	9	31	1.72
23909934--23909984	23	2.2	23	89	6	77	29	9	19	41	1.84
23916462--23916585	60	2.1	60	84	4	162	33	22	17	26	1.96
23925013--23925081	19	3.6	19	71	13	52	28	8	2	59	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23930221--23930292	29	2.4	28	81	11	72	76	6	8	8	1.16
23931893--23932430	86	6.2	86	92	1	765	30	23	22	23	1.99
23932029--23932248	43	5.1	43	61	20	118	30	22	22	24	1.99
23931893--23932431	258	2.1	259	90	0	846	30	23	22	24	1.99
23932553--23932669	44	2.7	44	83	0	162	26	19	24	29	1.99
23934049--23934216	83	2.0	84	98	1	329	17	22	21	38	1.93
23934353--23934382	16	1.9	15	93	6	51	30	3	0	66	1.07
23943988--23944063	40	1.9	40	83	5	100	32	13	32	21	1.91
23945749--23945781	16	2.1	16	100	0	66	36	6	36	21	1.78
23945763--23945857	44	2.1	45	84	5	122	32	6	28	32	1.82
23946013--23946047	18	2.0	17	88	5	52	54	0	0	45	0.99
23958666--23958768	27	3.8	26	84	5	118	38	20	17	23	1.93
23958660--23958768	54	2.0	54	84	7	141	38	21	17	22	1.93
23972808--23972920	42	2.7	42	81	2	120	43	20	20	15	1.88
24001969--24002055	45	2.0	44	81	2	102	37	18	20	22	1.94
24002577--24002614	20	2.1	19	85	14	53	57	0	10	31	1.32
24003867--24003915	20	2.5	20	83	3	64	61	0	2	36	1.08
24009468--24009543	9	8.4	9	92	0	98	44	25	6	23	1.77
24015155--24015194	16	2.4	17	91	4	64	22	40	15	22	1.91
24015346--24015397	24	2.2	24	96	0	95	44	23	9	23	1.82
24018201--24018264	3	21.7	3	90	3	103	29	0	3	67	1.06
24020728--24020911	102	1.8	102	84	4	257	24	16	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24020915--24021009	45	2.1	45	92	0	163	26	18	24	30	1.98
24028571--24028601	9	3.4	9	90	0	53	25	12	22	38	1.90
24029420--24029445	5	5.2	5	100	0	52	19	19	19	42	1.90
24035176--24035208	17	1.9	17	93	0	57	87	0	12	0	0.53
24044302--24044645	44	7.5	44	71	17	202	36	18	17	28	1.93
24044413--24044727	51	6.6	51	72	13	269	34	18	17	28	1.94
24044283--24044727	95	4.8	94	83	5	469	35	17	17	29	1.93
24045342--24045380	8	4.9	8	81	12	53	64	2	20	12	1.40
24046495--24046538	3	15.0	3	85	4	63	29	2	2	65	1.16
24048164--24048317	60	2.6	59	84	3	184	29	14	25	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128