genome.fa.s12.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  80  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26280908--26280942	13	2.6	13	95	4	61	22	2	0	74	0.95
26281033--26281074	19	2.2	20	86	4	59	23	4	4	66	1.30
26285802--26286012	105	2.0	105	98	0	404	31	7	11	49	1.66
26288512--26288551	19	2.0	20	85	4	55	37	2	7	52	1.43
26294864--26294938	11	6.8	11	71	27	61	54	1	1	42	1.17
26294367--26295167	397	2.0	397	99	0	1586	31	16	16	34	1.92
26294864--26294938	25	3.1	25	72	18	77	54	1	1	42	1.17
26299402--26299598	97	2.0	98	99	1	387	41	9	10	39	1.71
26302954--26302987	11	3.1	11	86	0	50	67	14	8	8	1.41
26304300--26304433	41	3.4	39	74	7	128	34	26	15	23	1.95
26304566--26304615	15	3.2	15	76	20	57	50	14	0	36	1.43
26311798--26311847	25	2.0	25	100	0	100	24	20	8	48	1.76
26312645--26312689	19	2.4	19	96	3	83	46	8	15	28	1.76
26316096--26316147	11	4.7	11	76	9	61	59	5	0	34	1.21
26316075--26316147	33	2.2	32	95	2	128	54	6	0	38	1.27
26319137--26319243	55	1.9	57	81	7	130	40	1	1	56	1.21
26319495--26319570	40	1.9	40	86	0	107	23	25	26	25	2.00
26319704--26319756	23	2.3	23	81	18	67	26	32	0	41	1.56
26319704--26319756	11	4.7	12	80	19	69	26	32	0	41	1.56
26321614--26321651	18	2.1	18	90	0	58	21	28	7	42	1.81
26321911--26321957	21	2.2	21	81	7	60	34	31	25	8	1.86
26322204--26322335	21	6.2	21	79	11	128	43	33	0	22	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26322259--26322324	7	9.4	7	73	11	55	43	34	1	19	1.60
26322196--26322468	43	6.4	43	77	15	241	44	31	0	23	1.59
26322266--26322347	15	5.7	15	78	15	68	45	32	1	20	1.59
26322281--26322356	7	10.4	8	71	19	51	44	34	1	19	1.59
26322266--26322391	58	2.2	56	86	10	168	45	33	0	20	1.57
26322324--26322466	22	6.5	22	77	13	141	44	30	0	23	1.59
26333305--26333359	27	2.2	25	80	9	58	40	7	7	45	1.60
26346468--26346495	6	4.7	6	100	0	56	32	0	0	67	0.91
26346783--26346850	31	2.2	32	81	7	77	29	17	4	48	1.67
26348847--26348892	18	2.4	19	86	13	60	52	0	2	45	1.13
26355507--26355554	21	2.3	21	85	0	60	18	29	20	31	1.97
26355518--26355562	21	2.1	21	83	0	54	15	28	22	33	1.95
26360344--26360376	18	1.9	18	88	11	52	33	12	0	54	1.37
26362214--26362249	17	2.1	17	89	0	54	44	22	16	16	1.86
26363750--26363805	3	18.3	3	78	7	51	66	0	1	32	1.03
26375517--26375541	10	2.5	10	100	0	50	48	0	8	44	1.32
26375525--26375882	55	6.3	54	79	11	403	45	5	10	38	1.62
26375569--26375652	18	4.6	18	70	11	62	51	4	7	36	1.51
26375636--26375773	66	2.1	66	86	6	192	47	4	9	39	1.56
26375691--26375717	10	2.7	10	100	0	54	51	0	7	40	1.30
26375580--26375828	121	2.1	121	95	0	444	46	5	9	38	1.59
26375739--26375773	18	1.9	18	94	0	61	54	2	8	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26375517--26375882	176	2.1	174	88	6	542	45	5	10	38	1.62
26375890--26376052	18	9.7	18	72	21	140	27	0	25	46	1.57
26375880--26375978	47	2.1	47	98	0	189	25	1	28	45	1.60
26375890--26376052	65	2.5	65	93	4	274	27	0	25	46	1.57
26376022--26376065	21	2.2	20	83	4	52	38	4	15	40	1.68
26376048--26376111	25	2.5	26	87	2	103	37	12	1	48	1.51
26376512--26376546	18	1.9	18	88	0	52	31	8	34	25	1.86
26377197--26377221	7	3.6	7	100	0	50	60	12	0	28	1.32
26378266--26378316	22	2.3	22	100	0	102	39	0	33	27	1.57
26380684--26380725	19	2.1	19	83	16	50	50	0	4	45	1.23
26380978--26381004	11	2.5	11	100	0	54	25	29	0	44	1.54
26381463--26381514	27	1.9	27	84	0	68	42	1	9	46	1.47
26384177--26384313	19	6.7	20	69	17	77	59	2	4	34	1.30
26384254--26384294	21	2.0	21	85	9	57	51	0	7	41	1.30
26388810--26388873	29	2.2	30	86	8	87	43	1	9	45	1.45
26390476--26390529	28	1.9	28	81	7	65	51	11	16	20	1.74
26391905--26391958	26	2.1	25	86	6	72	77	0	9	12	0.98
26396665--26396874	33	6.2	34	72	11	146	29	23	15	31	1.95
26396737--26396926	101	1.9	101	88	2	292	28	22	16	33	1.95
26398866--26398952	11	8.1	11	68	14	56	63	4	0	32	1.15
26398868--26398952	32	2.7	32	98	0	161	62	4	0	32	1.16
26403188--26403245	16	3.6	16	77	9	55	77	5	13	3	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26403204--26403245	7	6.5	6	91	5	57	78	4	14	2	1.01
26403200--26403250	27	1.9	27	88	11	79	78	5	11	3	1.06
26403183--26403253	27	2.6	27	80	10	74	76	4	12	7	1.14
26418000--26418135	67	2.0	67	100	0	272	28	24	13	33	1.93
26431235--26431748	138	3.8	136	80	4	529	30	23	17	27	1.97
26431883--26431991	17	6.4	17	78	0	119	35	12	14	36	1.85
26441808--26441852	20	2.3	19	85	7	63	75	4	0	20	0.97
26443434--26443527	43	2.2	43	96	0	170	47	17	6	28	1.71
26446637--26446777	24	5.7	26	69	9	98	15	26	22	35	1.94
26446647--26446768	49	2.5	50	81	2	131	16	26	22	35	1.95
26453505--26453554	21	2.5	20	83	3	64	24	20	12	44	1.85
26456664--26457506	70	12.2	70	75	7	243	26	18	23	30	1.98
26456754--26457200	202	2.2	208	86	4	602	29	20	22	28	1.98
26456683--26457583	140	6.5	140	74	6	557	27	18	22	30	1.98
26456768--26457450	210	3.3	205	81	8	674	27	18	22	30	1.98
26456768--26457578	210	3.9	209	78	8	647	27	19	22	30	1.98
26456950--26457569	70	8.9	70	76	6	387	27	18	21	32	1.97
26460392--26460429	20	1.9	20	84	10	51	73	2	7	15	1.17
26475102--26475172	33	2.2	33	92	0	115	33	12	12	40	1.81
26484813--26484899	45	1.9	45	88	0	129	48	10	17	24	1.78
26486057--26486109	23	2.3	23	80	3	61	28	3	30	37	1.75
26487166--26487261	28	3.4	28	72	2	77	31	18	14	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26488830--26489042	2	106.5	2	100	0	426	0	0	49	50	1.00
26489601--26489658	26	2.3	26	84	3	73	20	13	34	31	1.92
26495354--26495386	17	1.9	17	93	0	57	36	0	3	60	1.12
26497465--26497646	75	2.5	75	84	4	219	41	8	6	43	1.60
26499026--26499195	85	2.0	85	82	0	205	37	20	15	27	1.93
26503018--26503066	23	2.2	22	85	3	62	12	2	12	73	1.18
26503030--26503078	17	2.9	16	80	14	55	12	0	14	73	1.10
26503030--26503077	11	4.3	11	76	12	53	12	0	12	75	1.06
26508191--26508389	40	5.0	40	83	1	247	20	29	16	33	1.94
26508246--26508311	20	3.3	20	64	8	53	15	31	18	34	1.92
26508192--26508429	80	3.0	79	80	6	248	20	28	15	34	1.94
26514531--26514703	85	2.0	85	96	0	319	32	21	23	21	1.98
26516072--26516104	2	16.5	2	100	0	66	51	0	0	48	1.00
26534084--26534123	18	2.2	18	86	0	53	20	27	25	27	1.99
26534114--26534210	50	1.9	50	93	0	167	23	27	21	26	1.99
26537947--26537996	22	2.2	22	85	7	73	48	0	2	50	1.12
26548928--26548977	21	2.3	23	93	6	86	22	8	8	62	1.49
26558447--26558505	30	2.0	31	86	6	86	44	0	35	20	1.52
26567294--26567565	69	3.9	69	79	3	235	37	22	22	18	1.94
26577327--26577359	14	2.3	15	89	5	50	27	15	33	24	1.95
26577449--26577488	21	1.9	21	89	0	62	77	0	20	2	0.88
26577439--26577494	6	8.8	6	77	14	51	78	0	19	1	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26578898--26579912	50	20.3	50	80	1	1086	31	21	20	25	1.98
26578899--26579876	100	9.8	100	92	0	1501	31	21	20	25	1.98
26581883--26581918	12	3.0	12	91	0	54	33	5	2	58	1.36
26583117--26583349	82	2.9	80	88	8	341	51	12	7	28	1.67
26583559--26583894	80	4.2	80	98	1	631	51	12	6	29	1.63
26584206--26584235	11	2.6	11	94	5	51	60	0	3	36	1.14
26589984--26590020	9	4.1	9	85	0	56	43	13	13	29	1.82
26590240--26590299	30	2.0	31	83	9	79	18	40	0	41	1.50
26592153--26592185	11	3.0	11	91	8	50	48	0	6	45	1.27
26592273--26592532	112	2.3	112	97	1	495	38	8	4	48	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128