genome.fa.s12.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  96  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31662107--31662138	12	2.7	12	100	0	64	15	6	34	43	1.72
31663996--31664038	17	2.5	17	81	11	61	41	0	13	44	1.44
31664902--31664959	25	2.3	25	96	0	107	29	12	13	44	1.80
31684914--31684943	4	7.5	4	100	0	60	53	0	0	46	1.00
31688399--31688912	137	3.8	137	90	1	773	21	20	26	31	1.98
31695437--31695534	25	4.0	25	70	11	60	34	18	23	23	1.96
31695632--31695691	26	2.3	26	82	5	77	38	18	21	21	1.94
31695647--31695713	26	2.6	25	83	6	73	35	22	23	17	1.95
31696314--31696361	18	2.6	18	83	6	60	50	2	4	43	1.33
31697164--31697385	110	2.0	111	96	0	410	34	18	25	21	1.96
31706055--31706092	18	2.1	18	95	0	67	52	0	0	47	1.00
31706709--31706738	14	2.1	14	93	0	51	16	43	0	40	1.48
31708749--31708779	14	2.2	14	100	0	62	29	16	25	29	1.96
31723393--31723431	18	2.2	18	95	0	69	33	28	12	25	1.93
31734380--31734602	44	4.8	45	72	14	148	29	21	23	25	1.99
31734225--31735309	143	7.6	143	86	0	1405	29	20	22	27	1.98
31740703--31740730	10	2.8	10	100	0	56	82	0	10	7	0.85
31754346--31754794	44	10.2	43	63	10	138	30	20	23	24	1.99
31754212--31754883	132	5.1	132	94	0	1121	30	20	23	25	1.99
31770514--31770565	11	4.7	10	86	11	50	21	1	1	75	1.00
31770527--31770565	3	13.7	3	84	10	55	25	0	0	74	0.82
31770564--31770598	3	11.7	3	100	0	70	0	0	31	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31772041--31772158	36	3.3	36	80	2	130	17	12	27	41	1.86
31780684--31780723	19	2.0	20	85	4	55	80	2	7	10	1.00
31784460--31784498	16	2.4	16	100	0	78	41	12	0	46	1.42
31789993--31790029	13	2.9	13	81	18	51	32	2	0	64	1.07
31790154--31790279	47	2.7	46	81	6	164	46	3	7	42	1.49
31791233--31791273	19	2.2	19	100	0	82	43	14	4	36	1.67
31796659--31796746	41	2.1	41	83	8	108	30	21	18	29	1.97
31800153--31800330	49	3.6	49	80	3	180	28	23	26	20	1.99
31800096--31800338	99	2.4	102	76	8	244	28	22	26	22	1.99
31805755--31805921	50	3.4	50	80	4	178	22	26	22	28	1.99
31807744--31807844	21	4.8	21	72	3	78	46	15	21	15	1.83
31807690--31807844	42	3.7	42	80	0	148	45	17	21	15	1.85
31808165--31808205	20	2.0	20	100	0	82	46	14	4	34	1.66
31808262--31808314	26	2.0	26	100	0	106	37	16	0	45	1.48
31812107--31812132	12	2.2	12	100	0	52	73	0	0	26	0.84
31813339--31813370	7	4.6	7	92	0	55	12	53	0	34	1.39
31822091--31822277	92	2.0	92	100	0	374	28	13	19	37	1.90
31823978--31824002	12	2.1	12	100	0	50	16	0	8	76	1.02
31839048--31839337	50	5.7	50	81	3	287	28	21	26	23	1.99
31840073--31840124	25	2.1	25	96	3	97	40	11	9	38	1.74
31845817--31845882	32	2.1	32	94	0	114	25	18	28	27	1.98
31845849--31846081	50	4.7	50	77	3	202	29	21	27	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31849693--31849777	34	2.5	36	84	7	115	42	24	9	23	1.84
31849693--31849782	17	5.3	17	72	0	72	41	24	10	24	1.85
31849699--31849799	51	2.0	51	84	3	132	45	23	8	21	1.80
31852535--31852592	20	2.9	21	74	7	57	37	3	18	39	1.68
31858637--31858699	31	2.0	31	96	0	117	28	28	14	28	1.95
31859250--31859301	24	2.1	25	85	3	70	38	3	7	50	1.50
31859265--31859311	24	2.0	24	83	8	60	42	6	8	42	1.60
31861521--31861561	21	1.9	22	85	5	57	39	2	12	46	1.54
31863040--31863073	7	4.9	7	100	0	68	58	0	26	14	1.36
31876824--31876908	42	2.0	42	83	0	107	38	18	24	17	1.92
31876838--31876945	42	2.6	42	80	2	110	38	19	25	16	1.92
31889429--31889759	111	3.0	111	98	0	630	33	11	15	39	1.84
31894304--31894372	29	2.4	29	95	0	120	28	10	24	36	1.88
31894484--31894548	24	2.7	24	83	4	69	40	6	9	44	1.61
31911024--31911057	15	2.3	15	100	0	68	35	0	5	58	1.22
31924730--31924795	26	2.6	25	85	7	87	15	25	24	34	1.94
31924840--31924891	24	2.2	24	92	0	86	19	25	19	36	1.95
31924840--31924902	24	2.6	24	87	5	74	17	23	20	38	1.93
31929450--31929575	26	4.8	26	78	1	121	23	12	34	29	1.92
31930976--31931137	86	1.9	86	83	7	213	26	17	20	35	1.94
31931602--31931676	38	2.0	38	89	0	114	38	12	16	33	1.85
31933005--31933044	21	1.9	21	85	10	55	37	10	2	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31943497--31943536	14	2.9	14	84	0	53	35	7	15	42	1.75
31943505--31943571	34	1.9	35	84	3	91	34	8	10	46	1.70
31943520--31943559	20	2.0	20	85	0	53	32	10	7	50	1.64
31945627--31945661	18	2.0	17	88	5	52	42	0	2	54	1.15
31945631--31945673	18	2.4	18	80	11	52	34	0	9	55	1.32
31945899--31945989	47	2.1	44	82	12	107	30	8	20	39	1.83
31950976--31951470	206	2.4	206	87	3	698	40	14	12	32	1.83
31954603--31954675	27	2.7	27	86	0	101	21	17	20	39	1.92
31955088--31955189	50	2.0	50	98	0	195	33	21	8	36	1.85
31957091--31957289	84	2.3	84	82	9	226	20	17	25	36	1.94
31957091--31957289	46	4.6	45	78	14	199	20	17	25	36	1.94
31961275--31962038	382	2.0	382	100	0	1528	32	20	12	34	1.91
31963588--31963636	22	2.3	21	89	3	71	55	2	2	40	1.23
31963584--31963641	22	2.5	24	72	18	59	56	1	1	39	1.19
31977848--31977877	10	2.9	10	95	5	51	26	0	3	70	1.03
31980648--31980725	39	2.0	39	82	9	97	42	3	6	47	1.47
31980674--31980725	20	2.7	19	85	5	77	34	3	7	53	1.48
31980812--31980840	9	3.2	9	100	0	58	31	10	10	48	1.71
31983141--31983250	44	2.6	43	84	8	118	34	27	16	21	1.95
31994121--31994166	22	2.1	22	100	0	92	54	0	15	30	1.41
31999446--31999475	13	2.3	13	100	0	60	43	43	0	13	1.43
32025276--32025310	16	2.1	17	89	5	54	11	51	0	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32027010--32027061	25	2.1	25	89	7	79	67	5	5	21	1.33
32035923--32036039	27	4.3	27	92	2	182	43	20	17	17	1.88
32036252--32036769	259	2.0	259	98	0	991	16	16	27	38	1.91
32052951--32053098	40	3.7	41	76	8	144	18	32	14	33	1.92
32074258--32074409	78	2.0	77	96	1	277	39	13	17	30	1.87
32075407--32075437	8	3.9	8	100	0	62	12	0	9	77	0.99
32078245--32078282	10	3.9	10	86	6	60	28	0	2	68	1.03
32081188--32081218	10	3.1	10	95	0	53	38	0	29	32	1.57
32082612--32082658	19	2.5	19	82	6	60	29	0	8	61	1.25
32094163--32094244	41	2.0	41	88	4	121	52	2	9	35	1.48
32094271--32094307	18	2.1	18	89	0	56	72	16	0	10	1.10
32096179--32096243	32	2.0	32	96	0	121	49	13	9	27	1.73
32098457--32098514	17	3.3	18	78	9	57	70	3	3	22	1.17
32098460--32098502	22	2.0	22	86	9	61	67	4	2	25	1.22
32098471--32098514	17	2.5	18	88	3	63	72	2	2	22	1.07
32098473--32098514	13	3.2	13	83	6	50	73	2	2	21	1.06
32103247--32103734	243	2.0	240	94	1	859	34	12	16	36	1.87
32103743--32103832	9	9.4	9	73	12	56	60	1	3	35	1.21
32103745--32103827	29	2.8	28	80	10	78	57	1	3	37	1.24
32103779--32103836	30	2.0	30	83	16	77	55	0	5	39	1.22
32112855--32112880	11	2.4	11	100	0	52	38	0	0	61	0.96
32112863--32112903	21	2.0	21	90	0	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32126466--32126508	14	3.1	15	80	12	56	48	0	0	51	1.00
32126559--32126583	7	3.6	7	100	0	50	44	0	0	56	0.99
32130727--32130769	17	2.5	17	80	3	50	53	0	9	37	1.33
32139262--32139339	36	2.1	37	95	2	140	58	0	3	37	1.16
32145187--32145248	29	2.1	29	82	11	74	20	3	6	69	1.25
32148652--32148694	11	3.8	11	80	17	52	65	0	2	32	1.06
32161018--32161084	28	2.4	28	92	0	107	29	26	16	26	1.97
32161035--32161097	28	2.2	28	88	0	90	25	31	15	26	1.96
32169642--32169833	57	3.6	54	89	5	277	45	15	19	19	1.86
32172407--32172447	13	3.2	13	83	10	57	75	0	21	2	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128