genome.fa.s12.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  125  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41352165--41352294	60	2.2	60	98	1	251	32	17	10	39	1.84
41357515--41357544	16	1.9	15	93	6	51	0	10	0	90	0.47
41357512--41357556	15	2.9	16	80	6	56	2	17	0	80	0.82
41357985--41358013	2	14.5	2	100	0	58	48	0	0	51	1.00
41359216--41359276	32	1.9	32	100	0	122	32	19	11	36	1.88
41359976--41360210	77	3.1	77	70	17	258	48	5	1	44	1.37
41359955--41360249	147	2.0	148	99	0	583	46	6	2	45	1.39
41359968--41360189	70	3.1	70	65	20	193	45	6	1	45	1.39
41363363--41363423	31	2.0	31	90	6	97	39	9	9	40	1.72
41372950--41373029	39	2.1	39	100	0	160	28	17	22	31	1.97
41373280--41373517	74	3.2	74	99	0	467	37	12	5	44	1.64
41378623--41378840	82	2.7	82	89	2	323	34	17	20	27	1.95
41378623--41378862	81	3.0	81	88	3	331	35	17	20	26	1.95
41379441--41379488	12	4.5	11	78	19	57	45	2	0	52	1.12
41386543--41386728	98	1.9	96	83	4	239	40	4	8	46	1.56
41388505--41388720	109	2.0	107	85	4	292	37	14	16	31	1.89
41388871--41389258	109	3.6	109	88	4	588	31	15	13	38	1.86
41389447--41389488	19	2.3	18	84	8	50	28	0	11	59	1.33
41390580--41390621	14	3.0	14	80	13	59	30	7	26	35	1.83
41392439--41392577	27	5.1	27	100	0	278	21	37	25	15	1.92
41402636--41402691	25	2.2	25	83	0	67	21	25	21	32	1.98
41413257--41413301	21	2.1	21	100	0	90	20	15	4	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41414248--41414284	19	1.9	19	88	0	56	64	0	10	24	1.25
41418271--41418341	20	3.4	21	68	18	58	63	1	1	33	1.12
41418283--41418354	28	2.5	29	84	10	87	62	1	0	36	1.04
41418431--41418495	21	3.0	21	82	12	71	23	7	3	66	1.32
41418442--41418568	19	6.6	19	69	13	66	25	4	3	66	1.25
41418535--41418589	11	5.6	10	83	14	62	32	0	0	67	0.91
41418474--41418569	9	10.8	8	73	15	50	26	4	4	65	1.29
41418535--41418589	28	1.9	29	88	3	85	32	0	0	67	0.91
41418535--41418589	20	2.7	21	81	13	62	32	0	0	67	0.91
41419604--41419655	22	2.3	23	74	9	54	57	3	1	36	1.28
41434813--41434846	17	2.0	17	94	0	59	47	11	2	38	1.55
41439353--41439404	22	2.3	23	74	9	54	57	3	1	36	1.28
41443005--41443035	16	1.9	16	93	0	53	25	29	0	45	1.54
41444422--41444483	17	3.1	21	74	21	55	66	0	0	33	0.92
41444434--41444496	28	2.2	28	88	5	92	63	0	0	36	0.95
41444438--41444511	28	2.7	25	78	15	76	62	1	1	35	1.12
41444562--41444613	9	5.6	9	74	17	52	26	1	3	67	1.18
41444554--41444615	19	3.3	19	74	14	65	29	1	3	66	1.17
41444554--41444616	10	6.6	10	80	12	62	28	1	3	66	1.16
41450441--41450551	55	2.0	55	98	0	213	44	14	11	29	1.81
41453230--41453478	123	2.0	124	96	0	464	32	16	14	36	1.89
41463674--41463721	23	2.0	24	92	4	80	58	18	8	14	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41471749--41472205	227	2.0	228	99	0	907	40	10	13	35	1.78
41478791--41478837	22	2.2	20	85	7	58	70	0	19	10	1.16
41487715--41487752	4	10.0	4	88	11	62	50	23	0	26	1.50
41487722--41487750	14	2.1	14	100	0	58	51	20	0	27	1.47
41487718--41487752	18	1.9	18	100	0	70	51	22	0	25	1.48
41498963--41498992	14	2.1	14	100	0	60	46	6	20	26	1.75
41502559--41502605	22	2.1	22	92	0	76	29	25	0	44	1.54
41502891--41502992	50	2.0	51	98	1	197	35	13	5	45	1.68
41502911--41503021	50	2.3	48	83	10	129	36	16	4	42	1.68
41504433--41504625	102	1.9	102	86	2	278	45	8	5	40	1.57
41505556--41505852	86	3.5	83	82	8	334	34	5	26	33	1.79
41508354--41508460	4	26.8	4	94	0	187	47	26	1	24	1.62
41508933--41508971	20	2.0	20	94	0	69	38	10	10	41	1.73
41515857--41515919	23	2.7	25	78	14	71	57	7	1	33	1.37
41535305--41535354	22	2.3	21	86	6	73	44	4	4	48	1.40
41535500--41535548	20	2.6	18	75	9	53	55	2	4	38	1.31
41536284--41536313	4	7.5	4	100	0	60	50	0	0	50	1.00
41542053--41542087	6	5.8	6	96	0	52	34	8	17	40	1.80
41543318--41543531	104	2.0	106	98	1	414	46	5	10	36	1.62
41543743--41543796	21	2.6	20	82	8	72	29	7	29	33	1.85
41547444--41547492	24	2.0	24	96	0	89	24	12	2	61	1.42
41556248--41556278	4	7.8	4	92	0	53	51	22	0	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41565101--41565138	2	19.0	2	94	0	67	50	47	0	2	1.15
41565136--41565226	4	22.8	4	97	0	164	48	25	2	24	1.62
41568393--41568428	3	12.0	3	93	0	63	63	0	2	33	1.08
41570234--41570260	2	13.5	2	100	0	54	51	0	0	48	1.00
41575713--41575741	15	2.0	15	93	6	51	20	24	27	27	1.99
41577134--41577167	17	2.0	18	88	11	54	20	0	14	64	1.28
41578320--41578364	16	2.9	16	80	3	56	55	15	2	26	1.52
41579268--41579320	20	2.7	19	85	5	70	50	5	0	43	1.25
41579268--41579323	19	2.9	19	86	2	76	53	5	0	41	1.24
41592426--41592485	4	15.0	4	100	0	120	25	0	25	50	1.50
41592625--41592765	4	34.2	4	83	5	102	17	4	31	46	1.67
41592659--41592692	2	17.0	2	100	0	68	0	0	50	50	1.00
41593144--41593174	4	7.8	4	100	0	62	51	25	0	22	1.48
41603901--41603926	9	2.9	9	100	0	52	0	11	0	88	0.52
41619753--41619805	26	2.0	26	85	0	70	28	15	15	41	1.87
41623585--41623668	41	2.0	41	93	0	141	50	8	1	40	1.40
41627382--41627459	38	2.1	38	100	0	156	33	25	7	33	1.84
41633034--41633061	2	14.0	2	100	0	56	50	0	0	50	1.00
41634712--41634753	18	2.3	18	87	0	57	40	7	4	47	1.52
41644393--41644433	21	1.9	22	85	5	57	48	17	0	34	1.47
41662120--41662359	119	2.0	120	99	0	473	47	13	9	29	1.73
41665885--41666087	103	2.0	103	98	0	388	43	19	17	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41676724--41676754	16	2.0	16	93	6	55	54	12	12	19	1.70
41680530--41681051	260	2.0	261	99	0	1037	34	13	8	43	1.73
41681697--41681731	2	17.5	2	100	0	70	48	0	0	51	1.00
41701645--41701678	16	2.1	16	94	0	59	26	14	5	52	1.64
41701918--41701948	14	2.2	14	94	0	53	45	0	0	54	0.99
41702165--41702211	19	2.3	20	85	7	60	51	4	0	44	1.21
41703024--41703086	31	2.0	32	84	3	83	53	3	6	36	1.42
41703697--41703739	22	2.0	22	85	0	59	58	2	0	39	1.11
41704942--41704977	17	2.1	17	89	0	54	41	11	22	25	1.86
41705787--41705825	19	2.0	20	90	5	62	74	0	5	20	1.01
41706709--41706747	21	1.9	21	89	5	62	17	12	10	58	1.61
41706940--41706964	13	1.9	13	100	0	50	8	0	8	84	0.79
41707895--41707919	11	2.3	11	100	0	50	32	0	0	68	0.90
41717846--41717892	19	2.7	17	81	12	60	74	2	10	12	1.16
41727391--41727522	68	1.9	69	96	1	248	38	17	14	29	1.89
41730539--41730583	21	2.1	21	91	0	72	2	51	15	31	1.56
41737738--41737802	34	1.9	34	100	0	130	24	30	21	23	1.99
41742279--41742319	17	2.5	17	96	4	75	29	21	4	43	1.73
41743527--41743564	20	2.0	20	89	5	60	50	2	0	47	1.15
41749203--41749721	257	2.0	257	93	0	876	33	14	15	36	1.88
41768623--41768668	23	2.0	23	87	8	67	54	2	2	41	1.25
41781235--41781268	10	3.5	10	88	8	52	79	0	0	20	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41781235--41781279	19	2.3	20	81	11	58	75	2	0	22	0.91
41782442--41782475	10	3.5	10	88	8	52	79	0	0	20	0.73
41782442--41782486	19	2.3	20	81	11	58	75	2	0	22	0.91
41782816--41784623	904	2.0	904	100	0	3616	38	9	14	37	1.78
41796924--41796953	14	2.2	13	94	5	51	33	0	0	66	0.92
41804181--41804320	69	2.0	69	100	0	280	30	15	24	30	1.95
41807387--41807468	31	2.6	30	73	7	83	24	12	14	48	1.78
41808928--41808966	20	2.0	20	84	0	51	43	0	10	46	1.37
41809333--41809371	17	2.3	18	86	8	55	61	5	5	28	1.39
41813149--41813201	3	17.7	3	100	0	106	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128