genome.fa.s12.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  110  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36813768--36813936	39	4.3	39	87	0	239	29	3	20	46	1.67
36815457--36815492	18	2.1	17	89	5	54	72	8	5	13	1.27
36815654--36815740	38	2.3	39	79	2	95	51	6	8	33	1.58
36815810--36815857	22	2.2	22	88	0	69	58	2	4	35	1.29
36815867--36815908	3	14.0	3	89	0	66	64	2	2	30	1.19
36816679--36816718	17	2.4	17	91	0	62	17	22	50	10	1.76
36818037--36818070	17	2.0	17	100	0	68	64	0	0	35	0.94
36820081--36820110	15	2.0	15	93	0	51	33	6	10	50	1.62
36844601--36844931	53	6.2	52	71	12	199	36	17	19	26	1.94
36844601--36844848	107	2.3	105	80	8	261	37	16	19	27	1.93
36844641--36844931	160	1.8	158	85	4	406	36	18	19	26	1.94
36846645--36846675	15	2.1	15	93	0	53	45	0	3	51	1.17
36846733--36846770	16	2.5	15	87	8	58	65	7	0	26	1.19
36848037--36848184	55	2.7	56	77	5	149	26	21	20	31	1.98
36848134--36848261	55	2.3	55	77	7	143	26	19	21	32	1.97
36859749--36859814	27	2.4	27	87	0	96	25	28	30	15	1.96
36860043--36860088	3	15.3	3	100	0	92	32	0	0	67	0.91
36860087--36860124	3	12.7	3	100	0	76	0	0	31	68	0.90
36863738--36863872	4	33.0	4	74	20	95	0	29	0	70	0.88
36863734--36863872	26	5.1	26	68	24	90	0	29	0	70	0.88
36863729--36863842	40	2.9	39	87	6	149	0	28	0	71	0.87
36863738--36863881	54	2.6	55	78	11	141	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36863828--36863883	26	2.2	26	80	6	60	0	37	0	62	0.95
36863919--36863993	27	2.7	27	79	4	87	16	32	25	26	1.96
36865390--36865432	22	2.0	22	86	4	61	48	0	4	46	1.22
36869401--36869465	22	3.0	22	77	4	60	43	18	21	16	1.88
36869457--36869659	32	6.4	32	80	4	214	39	19	20	21	1.93
36869666--36869715	26	1.9	26	83	0	64	32	24	26	18	1.97
36869703--36869759	27	2.1	27	84	12	73	31	22	24	21	1.98
36869831--36869912	24	3.5	23	81	5	92	46	25	7	20	1.76
36869952--36870129	27	6.6	27	84	0	212	27	20	15	35	1.93
36872461--36872508	25	1.9	25	91	8	80	20	25	25	29	1.99
36876451--36876656	101	2.0	101	99	0	403	32	15	11	41	1.82
36877013--36877077	34	1.9	34	84	6	87	21	9	16	52	1.72
36884654--36884701	20	2.5	21	75	25	52	50	2	0	47	1.12
36887989--36888027	16	2.5	15	84	12	51	43	46	7	2	1.46
36888080--36888115	13	2.8	13	95	0	63	22	38	27	11	1.88
36888151--36888189	20	2.0	20	84	0	51	15	56	12	15	1.68
36889761--36890159	109	3.7	109	94	1	660	31	17	16	34	1.92
36897975--36898085	54	2.1	54	92	0	186	40	14	15	29	1.87
36901793--36902186	46	8.6	46	91	0	590	26	16	25	30	1.97
36902266--36902367	44	2.3	44	98	0	195	27	21	24	26	1.99
36902813--36902851	20	2.0	20	84	0	51	17	56	10	15	1.66
36903824--36903848	12	2.1	12	100	0	50	24	0	8	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36908346--36908371	2	13.0	2	100	0	52	50	0	0	50	1.00
36908336--36908691	177	2.0	178	98	0	696	23	15	10	50	1.75
36908945--36908976	3	10.7	3	93	0	55	0	31	3	65	1.08
36924682--36924721	13	3.1	13	81	0	53	25	0	5	70	1.08
36931924--36932056	43	3.1	43	81	4	162	42	18	17	21	1.90
36933085--36933173	11	7.4	12	73	12	51	37	2	3	57	1.28
36933111--36933161	24	2.1	25	85	3	68	41	0	3	54	1.19
36933523--36933559	18	2.1	18	100	0	74	64	0	0	35	0.94
36947731--36947755	6	4.2	6	100	0	50	48	0	52	0	1.00
36948830--36948855	2	13.0	2	100	0	52	50	0	0	50	1.00
36951793--36951834	22	1.9	22	90	0	66	19	26	14	40	1.89
36957359--36957474	60	1.9	60	82	0	142	37	4	15	42	1.67
36962325--36962490	82	2.0	82	94	0	287	29	11	14	44	1.80
36964365--36964439	28	2.7	28	84	10	91	52	2	4	41	1.34
36970822--36971263	54	8.2	54	79	3	437	28	17	15	38	1.91
36971551--36971583	17	2.0	17	88	5	50	42	12	15	30	1.83
36972230--36972263	5	6.6	5	86	6	50	38	2	20	38	1.68
36979498--36979561	25	2.6	25	92	0	101	21	28	18	31	1.97
36979492--36979593	25	4.0	26	78	8	95	24	25	18	31	1.98
36988093--36988275	43	4.2	44	85	6	225	31	19	24	25	1.98
36988718--36988765	21	2.3	21	88	0	69	6	39	18	35	1.76
37007935--37008078	42	3.4	42	88	3	216	25	20	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37007934--37008078	43	3.4	43	89	1	220	25	20	21	32	1.98
37035174--37035228	3	18.3	3	100	0	110	67	0	32	0	0.91
37041158--37041194	19	1.9	19	89	10	58	18	2	2	75	1.04
37041450--37041494	24	1.9	23	90	4	72	31	8	13	46	1.74
37042046--37042096	17	2.9	17	88	2	66	60	1	1	35	1.19
37042044--37042098	8	6.5	8	82	12	65	58	1	1	38	1.20
37043687--37043736	21	2.4	21	80	6	57	16	24	14	46	1.83
37043730--37043862	42	3.2	42	83	0	158	15	24	17	43	1.87
37043727--37043841	21	5.5	21	68	0	86	15	24	17	42	1.88
37047589--37047635	20	2.3	20	78	7	51	48	2	10	38	1.50
37048163--37048304	74	1.9	74	82	2	178	18	23	18	40	1.91
37048223--37048340	25	4.8	24	78	12	98	18	25	21	34	1.96
37051724--37051854	62	2.1	63	81	4	149	21	31	22	24	1.98
37057080--37057345	30	8.7	30	81	5	284	33	7	16	42	1.77
37064241--37064508	30	8.9	30	82	5	290	33	6	14	44	1.72
37064239--37064508	90	3.0	90	85	5	341	33	7	14	44	1.73
37064654--37064768	43	2.8	41	85	5	142	29	16	27	26	1.97
37066256--37066434	84	2.1	85	97	2	344	44	6	5	43	1.54
37067858--37067905	10	4.9	10	76	2	53	66	2	6	25	1.26
37070474--37070555	24	3.4	23	74	15	67	34	19	29	17	1.94
37073977--37074019	18	2.4	17	85	11	59	46	0	11	41	1.40
37075126--37075362	126	1.9	126	95	0	429	38	14	8	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37079511--37079541	15	2.1	15	100	0	62	22	38	12	25	1.90
37080468--37080510	3	14.3	3	100	0	86	67	0	32	0	0.91
37082773--37083328	283	2.0	285	95	0	1017	49	12	14	23	1.77
37084574--37084898	131	2.5	133	90	1	510	27	25	19	28	1.98
37084573--37084944	133	2.8	131	86	4	480	27	24	19	28	1.98
37095909--37096041	66	2.0	66	95	0	239	36	18	12	32	1.88
37097315--37097421	56	1.9	55	90	7	171	40	8	21	29	1.83
37105374--37105398	7	3.6	7	100	0	50	12	16	0	72	1.13
37109539--37109607	3	22.7	3	75	8	50	21	4	1	72	1.10
37111031--37111056	2	13.0	2	100	0	52	50	50	0	0	1.00
37111056--37111083	2	14.0	2	100	0	56	50	0	0	50	1.00
37113913--37113961	23	2.2	22	82	10	55	67	12	12	8	1.42
37130266--37131333	534	2.0	534	100	0	2136	38	11	17	33	1.85
37133193--37133530	58	6.1	58	83	9	438	33	14	23	28	1.94
37133244--37133530	51	5.4	50	85	6	315	33	14	23	28	1.94
37133347--37133386	7	5.7	7	93	0	62	42	5	27	25	1.75
37133976--37134024	23	2.1	23	96	0	89	40	0	18	40	1.50
37134352--37134390	12	3.2	12	89	7	53	17	17	7	56	1.64
37134351--37134389	20	2.0	20	89	0	60	15	17	7	58	1.59
37134581--37134768	50	3.8	50	76	2	164	22	27	20	29	1.98
37134921--37134964	21	2.1	21	83	8	54	52	11	4	31	1.57
37135916--37135982	30	2.2	30	97	2	125	56	11	5	25	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37142192--37142379	50	3.8	50	75	2	155	22	27	21	28	1.99
37149489--37149560	22	3.2	24	62	22	64	26	16	27	29	1.97
37149482--37149569	44	2.0	44	97	0	167	25	17	27	30	1.97
37150162--37150229	21	3.4	20	76	10	68	2	30	16	50	1.60
37150162--37150241	19	3.9	21	75	9	76	2	30	15	52	1.55
37150166--37150245	40	2.0	40	82	0	97	2	28	16	52	1.56
37152577--37152682	6	17.2	6	83	11	126	34	0	45	18	1.57
37152577--37152682	13	8.1	13	79	16	121	34	0	45	18	1.57
37152757--37152787	7	4.6	7	92	8	55	41	0	41	16	1.48
37152755--37152820	7	10.5	6	76	12	53	36	1	43	18	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128