genome.fa.s12.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  48  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15187894--15188027	24	5.6	24	82	0	142	45	20	6	27	1.76
15188045--15188209	27	6.1	27	83	0	213	22	23	21	32	1.98
15197593--15197654	29	2.1	30	84	3	81	25	22	16	35	1.94
15197639--15197835	30	6.7	30	73	10	122	22	25	13	39	1.90
15197697--15197872	29	6.0	29	77	9	135	24	26	14	35	1.93
15197639--15197831	59	3.3	59	73	9	185	22	25	12	39	1.90
15197817--15197885	29	2.4	29	92	0	111	26	26	11	36	1.90
15205139--15205230	27	3.4	27	64	14	71	34	1	5	58	1.28
15205132--15205238	55	1.9	55	96	0	196	37	2	4	55	1.36
15220978--15221122	50	2.9	50	78	0	146	29	21	28	20	1.98
15228482--15228674	50	3.7	50	76	8	165	27	21	26	23	1.99
15228488--15228674	100	1.8	103	80	9	229	27	20	27	23	1.99
15228594--15228728	49	2.7	50	79	6	141	30	19	25	25	1.98
15228933--15228971	20	2.0	20	89	0	60	46	5	30	17	1.70
15239766--15239820	29	2.0	27	82	13	67	45	1	1	50	1.22
15245037--15245070	17	2.0	17	88	11	52	29	8	17	44	1.79
15245115--15245169	20	2.8	20	88	0	92	49	0	27	23	1.51
15252453--15252516	25	2.6	25	82	2	67	21	25	23	29	1.99
15252473--15252539	25	2.7	25	80	0	71	23	22	22	31	1.98
15262962--15263038	27	3.0	27	61	24	67	29	10	29	29	1.90
15266426--15266474	19	2.6	18	78	9	53	63	0	2	34	1.06
15266927--15266974	24	2.0	24	87	0	69	37	2	8	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15267711--15267741	15	2.1	15	100	0	62	41	0	6	51	1.27
15268530--15268576	10	4.3	11	82	15	53	59	0	0	40	0.97
15276454--15276502	19	2.6	18	78	9	53	63	0	2	34	1.06
15276955--15277002	24	2.0	24	87	0	69	37	2	8	52	1.44
15277739--15277769	15	2.1	15	100	0	62	41	0	6	51	1.27
15278558--15278604	10	4.3	11	82	15	53	59	0	0	40	0.97
15281790--15281933	70	2.1	69	96	3	270	38	11	18	31	1.86
15296508--15296538	2	15.5	2	100	0	62	51	0	0	48	1.00
15297357--15297406	25	2.0	25	100	0	100	52	20	8	20	1.71
15297976--15298022	21	2.2	21	100	0	94	29	14	23	31	1.95
15323818--15323873	27	2.1	27	86	0	76	37	21	19	21	1.94
15323855--15323923	27	2.6	27	76	0	75	39	13	26	21	1.90
15328546--15328601	21	2.6	22	75	8	62	37	33	16	12	1.86
15332899--15332924	6	4.3	6	100	0	52	15	0	0	84	0.62
15338642--15338683	21	2.0	21	90	0	66	30	21	21	26	1.98
15339845--15339884	17	2.4	17	100	0	80	42	15	12	30	1.83
15340298--15340359	27	2.3	27	85	0	79	41	14	22	20	1.89
15340312--15340369	27	2.1	27	81	6	64	39	15	22	22	1.91
15340400--15340477	27	2.9	27	72	0	66	34	17	25	21	1.96
15345329--15345429	41	2.5	40	81	9	109	34	14	20	29	1.93
15348207--15348235	14	2.0	15	93	6	51	48	20	3	27	1.66
15349254--15349309	19	3.0	19	89	7	80	39	0	5	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15358677--15358723	21	2.1	23	81	14	55	36	19	4	40	1.71
15360619--15360649	14	2.2	14	94	0	53	29	16	9	45	1.79
15361739--15361816	18	4.3	18	80	0	93	46	8	17	26	1.78
15361739--15361816	36	2.2	36	88	0	111	46	8	17	26	1.78
15361828--15361866	18	2.2	18	90	0	60	33	7	15	43	1.75
15368188--15368231	20	2.2	19	84	8	52	59	0	4	36	1.18
15368314--15368363	19	2.6	19	75	9	57	58	0	6	36	1.23
15368635--15368701	21	3.3	22	72	17	56	41	8	0	49	1.34
15373115--15373142	12	2.3	12	100	0	56	21	0	7	71	1.09
15375665--15375696	15	2.1	15	94	0	55	62	0	3	34	1.11
15376004--15376057	22	2.5	21	85	8	72	61	5	3	29	1.36
15377293--15377521	127	1.8	126	82	2	298	28	21	18	31	1.97
15377527--15377709	50	3.7	50	71	2	152	26	26	20	26	1.99
15377511--15377722	100	2.1	100	91	0	343	26	25	19	28	1.99
15381819--15381853	17	2.1	17	100	0	70	34	22	14	28	1.93
15382044--15382068	8	3.1	8	100	0	50	36	40	0	24	1.55
15382635--15382688	24	2.3	24	78	12	58	59	1	14	24	1.46
15382667--15382722	26	2.2	25	81	6	67	60	8	14	16	1.57
15390175--15390282	13	8.2	14	73	18	65	61	1	1	35	1.18
15390189--15390256	3	23.0	3	77	14	70	61	2	0	35	1.11
15390189--15390283	11	8.4	11	73	23	65	62	2	1	34	1.14
15398003--15398108	26	4.1	26	72	2	88	33	33	15	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15401052--15401111	29	2.1	29	93	6	104	33	5	8	53	1.53
15405189--15405257	25	2.8	25	88	2	77	78	2	8	10	1.07
15407928--15407986	24	2.5	24	76	13	59	45	1	6	45	1.40
15408389--15408633	122	2.0	123	98	0	474	41	28	12	18	1.86
15413607--15413661	2	27.5	2	92	0	92	52	45	1	0	1.11
15416062--15416099	18	2.1	18	85	9	51	36	5	0	57	1.21
15416208--15416256	19	2.6	19	100	0	98	30	4	26	38	1.75
15416920--15416949	15	2.0	15	93	0	51	50	13	10	26	1.73
15421821--15421865	23	2.0	23	82	8	56	35	13	4	46	1.63
15421977--15422402	20	21.3	20	82	1	415	41	20	26	11	1.86
15421977--15422393	80	5.2	80	84	1	487	41	20	26	11	1.86
15424910--15424948	12	3.1	12	79	13	51	46	5	0	48	1.24
15425175--15425212	17	2.3	17	86	4	51	34	2	5	57	1.35
15425155--15425194	20	2.1	19	85	4	53	27	0	7	65	1.20
15425156--15425227	37	2.0	35	86	5	99	34	1	6	56	1.35
15425160--15425226	20	3.5	19	69	19	50	35	1	7	55	1.37
15431167--15431633	126	3.6	126	84	8	645	29	16	22	32	1.95
15431382--15431640	138	1.9	135	91	2	428	29	16	22	31	1.96
15434460--15434519	29	2.1	29	90	0	93	28	0	23	48	1.51
15434542--15434654	25	4.7	25	69	12	94	41	12	0	45	1.48
15434562--15434668	35	3.1	35	66	15	103	42	13	0	43	1.49
15435801--15435825	7	3.6	7	100	0	50	60	12	0	28	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15436726--15436781	22	2.5	22	97	2	103	39	0	32	28	1.57
15436742--15436798	10	5.2	11	74	21	57	43	0	35	21	1.52
15444060--15444132	19	3.8	19	88	0	119	38	10	15	35	1.82
15444340--15444384	23	2.0	23	81	0	54	22	0	15	62	1.33
15446017--15446060	23	1.9	23	85	0	61	40	9	6	43	1.63
15448184--15448210	12	2.2	12	100	0	54	40	7	0	51	1.30
15448241--15448308	28	2.4	28	73	11	66	30	1	4	63	1.23
15451658--15451705	19	2.5	19	90	6	71	25	20	8	45	1.79
15459853--15459938	45	1.9	45	90	0	136	31	18	23	26	1.97
15464887--15465000	58	2.0	58	94	0	201	20	25	17	36	1.94
15466065--15466178	58	2.0	58	94	0	201	20	25	17	36	1.94
15466945--15467025	40	2.0	40	97	0	153	27	16	9	46	1.78
15467859--15467888	15	2.0	15	100	0	60	40	6	33	20	1.78
15472091--15472121	15	2.1	15	93	0	53	35	6	32	25	1.82
15473127--15473153	13	2.1	13	100	0	54	33	22	7	37	1.82
15473389--15473443	25	2.2	25	90	0	83	47	0	7	45	1.30
15476920--15477091	50	3.5	50	78	2	150	23	27	20	28	1.99
15477058--15477128	37	1.9	37	91	0	115	19	35	15	29	1.93
15479748--15479790	16	2.7	16	82	7	52	67	4	2	25	1.22
15490194--15490252	26	2.3	25	85	5	73	18	1	1	77	0.93
15492291--15492343	26	2.0	26	100	0	106	37	3	15	43	1.64
15498944--15499190	97	2.5	97	97	1	460	48	5	8	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15499202--15499241	21	2.0	20	85	5	53	45	5	7	42	1.54
15499814--15499854	21	1.9	21	85	5	55	58	4	0	36	1.20
15500079--15500164	37	2.3	37	88	9	138	60	4	0	34	1.17
15500076--15500137	30	2.0	30	84	6	79	58	6	0	35	1.24
15501515--15501550	17	2.1	17	100	0	72	25	16	22	36	1.94
15505892--15505945	27	2.0	27	100	0	108	25	25	11	37	1.89
15506475--15506505	8	4.0	8	95	4	55	64	0	12	22	1.27
15507661--15507698	11	3.5	11	82	10	51	50	0	0	50	1.00
15510821--15510908	28	3.2	28	85	4	108	25	23	20	30	1.98
15518990--15519037	25	1.9	25	86	0	69	39	18	18	22	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128