genome.fa.s12.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  16  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4639607--4639657	24	2.0	25	85	14	68	45	0	9	45	1.36
4645312--4645341	14	2.1	15	93	6	53	60	0	13	26	1.34
4660966--4661047	21	3.8	22	80	9	98	36	24	21	17	1.94
4674444--4674491	21	2.3	21	78	7	53	39	2	20	37	1.65
4679322--4679356	16	2.1	17	94	5	63	60	0	0	40	0.97
4681475--4681524	24	2.1	24	96	0	91	38	8	10	44	1.68
4682165--4682219	28	2.0	28	82	13	69	65	5	5	23	1.35
4688448--4688519	29	2.5	28	73	8	72	6	22	4	66	1.33
4688498--4688556	21	2.9	19	83	11	73	6	22	3	67	1.29
4690787--4690876	39	2.4	38	84	3	110	47	11	12	28	1.75
4690859--4690898	12	3.4	12	86	6	64	50	12	15	22	1.77
4690853--4690905	23	2.2	24	93	3	90	50	15	13	20	1.76
4690900--4690926	9	3.0	9	100	0	54	66	11	0	22	1.22
4691727--4691758	10	3.3	10	95	4	57	0	53	9	37	1.34
4693093--4693299	104	2.0	104	95	1	371	11	32	6	49	1.63
4697042--4697151	45	2.6	44	81	8	131	31	28	5	34	1.80
4697132--4697183	16	3.2	16	88	0	77	36	34	0	28	1.58
4702386--4702428	14	3.2	14	80	9	54	25	2	2	69	1.12
4712836--4712886	25	2.0	25	100	0	102	35	11	25	27	1.91
4714588--4714620	11	3.0	11	87	12	50	0	18	0	81	0.68
4716238--4716309	29	2.4	31	80	20	89	41	8	1	48	1.42
4721665--4721737	29	2.5	30	77	16	73	46	12	2	38	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4728181--4728332	75	2.0	76	98	1	297	46	7	2	42	1.46
4733116--4733165	16	3.1	16	78	21	52	44	0	2	54	1.11
4736055--4736299	41	6.0	41	93	0	400	29	20	27	22	1.98
4745721--4745813	44	2.1	46	88	8	138	32	4	26	36	1.76
4751982--4752013	9	3.6	9	95	0	55	50	18	6	25	1.70
4758403--4758466	13	4.9	13	81	7	85	35	23	7	32	1.84
4766076--4766100	6	4.2	6	100	0	50	84	0	16	0	0.63
4767760--4767811	27	1.9	27	88	0	77	65	11	11	11	1.48
4770931--4771024	27	3.5	28	78	11	90	59	17	9	13	1.60
4771763--4771822	27	2.2	27	82	8	77	51	18	10	20	1.74
4779219--4779260	1	42.0	1	95	0	66	0	95	0	0	0.07
4780038--4780115	40	2.0	40	86	0	111	20	28	29	21	1.98
4780246--4780282	19	1.9	19	94	0	65	67	13	0	18	1.23
4780312--4780354	11	3.8	12	80	20	56	30	30	0	39	1.57
4781300--4781324	7	3.6	7	100	0	50	28	0	12	60	1.32
4782592--4783256	22	30.8	22	84	3	818	45	29	0	24	1.58
4782592--4783256	65	10.3	65	86	2	842	45	29	0	24	1.58
4782592--4783256	87	7.7	86	86	2	854	45	29	0	24	1.58
4786425--4786885	126	3.7	125	87	2	656	29	22	17	31	1.96
4787353--4787382	13	2.4	13	94	5	53	40	0	0	60	0.97
4799903--4799966	17	3.6	17	74	15	67	26	12	14	46	1.79
4799895--4799965	36	2.0	36	97	0	133	25	12	15	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4799894--4799950	19	3.1	19	71	19	66	26	12	15	45	1.82
4800174--4800265	48	1.9	48	90	0	148	20	16	20	42	1.89
4805031--4805101	36	2.0	36	91	0	115	25	12	15	46	1.81
4805306--4805400	48	2.0	48	95	0	172	18	16	22	42	1.89
4807914--4808037	42	3.0	42	97	0	239	24	32	24	19	1.98
4808630--4808715	25	3.5	25	66	13	70	37	20	22	19	1.95
4808881--4808928	25	2.0	25	91	4	80	43	20	20	14	1.87
4809408--4809606	99	2.0	100	99	1	391	33	19	7	40	1.78
4811320--4811462	58	2.5	58	85	4	173	49	12	13	24	1.76
4813822--4813864	23	2.0	22	86	9	61	41	4	9	44	1.57
4813958--4814014	26	2.2	26	81	9	62	66	5	28	0	1.13
4819415--4819474	14	4.2	14	70	18	52	43	1	1	53	1.20
4820767--4820825	18	3.4	17	75	13	57	49	16	13	20	1.80
4820800--4820873	38	1.9	38	83	5	96	39	10	16	33	1.83
4820833--4821190	18	19.9	18	68	12	103	41	9	13	35	1.77
4820834--4820995	70	2.3	71	81	3	184	37	11	15	35	1.84
4820833--4820995	17	9.3	17	70	14	82	37	11	15	35	1.84
4821003--4821057	17	3.2	17	77	10	58	45	10	12	30	1.77
4821068--4821178	52	2.1	51	80	12	127	43	7	12	36	1.70
4821158--4821208	19	2.5	21	81	9	61	37	9	7	45	1.67
4821229--4821272	17	2.5	17	82	13	54	45	11	13	29	1.79
4821229--4821271	18	2.4	18	85	11	54	46	9	13	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4821366--4821408	22	2.0	22	90	4	70	46	9	9	34	1.68
4821925--4821989	10	6.4	10	72	12	53	3	21	1	73	1.05
4822071--4822113	14	3.0	14	83	10	52	0	37	0	62	0.95
4822081--4822126	18	2.7	17	77	16	51	0	39	0	60	0.97
4823315--4823364	19	2.6	19	87	9	66	36	0	24	40	1.55
4828579--4828611	14	2.3	15	89	5	50	57	18	3	21	1.53
4835706--4835757	7	7.3	7	76	4	50	50	30	0	19	1.48
4835706--4835757	14	3.6	14	85	14	63	50	30	0	19	1.48
4839759--4839824	32	2.1	32	83	10	84	43	10	12	33	1.76
4841323--4841386	30	2.1	30	91	0	101	23	29	31	15	1.95
4842375--4842415	21	2.0	21	90	0	64	39	19	29	12	1.88
4842355--4842491	21	6.5	21	65	6	62	44	16	22	16	1.86
4846130--4846178	26	1.9	26	87	4	73	20	22	20	36	1.95
4846164--4846238	25	3.1	24	76	12	66	22	21	21	34	1.97
4855803--4855840	18	2.1	18	85	9	51	15	15	7	60	1.57
4855850--4855952	12	8.5	11	69	19	55	27	13	8	50	1.71
4865201--4865232	16	2.0	16	93	0	55	46	6	28	18	1.73
4865123--4865310	94	2.0	94	88	0	277	36	7	22	33	1.82
4865242--4865607	78	4.9	70	83	7	272	33	8	21	35	1.85
4865046--4865378	162	2.0	164	84	7	440	34	8	23	33	1.85
4865310--4865633	78	4.2	78	89	1	472	33	8	21	36	1.85
4869567--4869600	17	1.9	18	88	5	52	35	0	2	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4870135--4870168	17	1.9	17	88	5	50	0	17	2	79	0.86
4880455--4880495	14	3.0	14	96	3	75	80	0	19	0	0.71
4884995--4885421	78	5.5	78	88	0	613	35	21	8	34	1.83
4884995--4885608	156	3.8	156	82	7	737	35	22	8	34	1.84
4885406--4885437	16	2.0	16	93	0	55	18	28	6	46	1.73
4885328--4885515	94	2.0	94	91	0	304	32	22	7	36	1.84
4885250--4885593	172	2.0	172	90	1	537	33	22	8	35	1.84
4885422--4885608	78	2.4	78	88	5	272	33	23	8	34	1.85
4888629--4888655	6	4.5	6	100	0	54	18	33	33	14	1.92
4890079--4890315	105	2.3	104	83	5	291	24	21	30	23	1.99
4890244--4890350	42	2.5	42	81	3	126	21	23	36	18	1.95
4890855--4890915	24	2.7	22	78	9	68	26	8	18	47	1.76
4894119--4894152	18	1.9	17	88	5	50	44	20	17	17	1.87
4905677--4905706	8	3.8	8	100	0	60	10	23	13	53	1.69
4905674--4905721	13	3.5	13	81	15	60	8	22	14	54	1.67
4910435--4910460	4	6.5	4	100	0	52	23	0	0	76	0.78
4910414--4910482	20	3.3	21	74	18	72	24	2	2	69	1.16
4912682--4912729	25	2.0	25	88	8	73	43	0	2	54	1.12
4912835--4912883	20	2.5	20	93	0	80	61	4	0	34	1.15
4919012--4919054	10	4.3	10	81	0	50	48	20	2	27	1.62
4922400--4922440	20	2.0	20	100	0	82	39	14	19	26	1.90
4934051--4934095	22	2.0	22	86	4	63	37	17	6	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4934067--4934110	19	2.5	17	86	13	70	31	18	9	40	1.81
4934533--4934945	131	3.1	132	86	1	560	25	25	19	28	1.99
4934936--4935142	89	2.3	89	83	0	252	26	22	23	27	1.99
4935106--4935907	45	17.9	46	73	9	264	27	21	18	32	1.97
4935142--4935413	89	2.9	94	78	10	247	29	19	18	33	1.95
4935383--4935904	89	5.9	88	77	5	390	27	22	17	31	1.97
4935129--4935773	178	3.6	178	82	5	644	27	20	18	32	1.96
4935477--4935913	223	2.0	223	89	1	671	26	23	18	31	1.97
4936236--4936311	24	3.2	24	84	0	107	31	19	11	36	1.88
4938289--4939035	373	2.0	374	99	0	1487	36	15	16	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128