genome.fa.s12.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  118  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39244512--39244569	21	2.9	20	70	7	55	51	5	12	31	1.61
39249851--39249952	49	2.1	50	96	1	188	41	12	16	29	1.86
39251705--39251772	27	2.6	27	84	11	79	60	1	1	36	1.15
39261067--39261110	15	2.9	15	86	0	61	15	6	72	4	1.22
39266328--39266523	97	2.0	98	98	1	385	45	12	6	36	1.67
39268143--39268199	27	2.1	27	86	0	78	21	21	35	22	1.96
39268341--39268459	60	2.0	60	96	0	220	53	12	0	33	1.39
39268684--39268733	25	2.0	24	84	3	64	60	0	2	38	1.09
39270929--39270973	21	2.1	21	83	4	54	62	6	11	20	1.50
39292825--39292870	23	2.0	22	91	4	74	41	0	0	58	0.98
39293809--39293862	27	1.9	27	85	7	72	51	1	5	40	1.36
39294057--39294087	15	2.1	15	93	0	53	48	0	0	51	1.00
39294726--39294756	16	1.9	16	93	0	53	77	3	16	3	1.03
39295824--39296335	100	5.1	100	89	1	668	24	21	22	32	1.98
39295838--39296349	50	10.2	50	73	1	371	24	21	22	31	1.98
39296267--39297005	250	2.9	254	81	7	812	24	26	22	27	2.00
39298891--39298930	20	2.0	20	85	14	55	2	7	5	85	0.83
39306831--39306921	3	30.7	3	78	10	98	62	3	2	31	1.23
39311935--39311964	5	6.0	5	100	0	60	20	20	60	0	1.37
39313385--39313439	23	2.4	24	82	11	62	47	1	0	50	1.11
39315613--39315670	3	19.3	3	100	0	116	67	0	0	32	0.91
39323289--39323318	5	6.0	5	100	0	60	20	20	60	0	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39324739--39324793	23	2.4	24	82	11	62	47	1	0	50	1.11
39326967--39327024	3	19.3	3	100	0	116	67	0	0	32	0.91
39331201--39331281	25	3.2	25	77	6	92	38	19	14	27	1.91
39332396--39332656	136	1.9	135	97	0	495	43	13	19	23	1.86
39333553--39333582	12	2.5	12	94	0	51	36	3	0	60	1.14
39335016--39335123	31	3.5	30	75	7	110	41	1	4	51	1.33
39335000--39335125	61	2.1	61	93	0	216	42	1	6	49	1.37
39337974--39338041	29	2.6	24	79	13	64	63	8	0	27	1.24
39342033--39342238	106	1.9	106	92	0	340	37	15	17	28	1.91
39348775--39348848	33	2.2	33	85	0	103	25	13	45	14	1.82
39348787--39348860	33	2.2	33	85	0	94	22	13	44	18	1.85
39349737--39349838	50	2.0	50	98	0	195	30	22	21	25	1.99
39350609--39350644	18	1.9	19	94	5	65	61	5	5	27	1.41
39350609--39350652	18	2.6	16	86	13	54	63	6	4	25	1.38
39350643--39350675	16	2.1	16	88	5	50	57	12	0	30	1.35
39350676--39350954	103	2.7	104	85	7	381	55	16	0	27	1.46
39351776--39351847	35	2.0	36	94	2	128	52	23	0	23	1.47
39358869--39358993	59	2.1	59	86	0	169	26	12	23	37	1.91
39359336--39359412	31	2.5	30	79	10	84	36	5	7	50	1.54
39363397--39363936	30	18.0	30	99	0	1062	30	22	3	43	1.70
39363377--39363420	23	1.9	22	82	17	54	36	25	0	38	1.56
39363983--39364068	45	1.9	45	92	0	145	30	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39364125--39364302	51	3.5	51	81	7	245	31	25	17	25	1.97
39364085--39364317	101	2.3	101	93	2	396	31	27	16	25	1.96
39364790--39364819	2	15.0	2	92	0	51	53	0	0	46	1.00
39364928--39365025	41	2.4	41	88	5	137	36	13	26	23	1.92
39366686--39366780	46	2.1	46	93	0	163	20	22	29	28	1.98
39375203--39375272	34	1.9	38	86	11	103	7	17	2	72	1.19
39376168--39376228	30	2.1	29	81	9	70	63	1	4	29	1.24
39381073--39381118	18	2.5	19	82	10	60	67	8	0	23	1.18
39381194--39381255	30	2.1	30	93	0	106	58	12	3	25	1.50
39381789--39381823	18	1.9	18	88	0	52	60	0	11	28	1.32
39387960--39388064	28	3.8	28	83	5	133	40	15	22	21	1.91
39392458--39392503	23	2.0	23	83	8	58	41	6	13	39	1.70
39405436--39405498	24	2.6	22	77	20	56	11	11	7	69	1.36
39431162--39431207	23	2.1	22	88	8	67	67	6	4	21	1.32
39431208--39431245	19	2.0	20	89	5	60	55	2	2	39	1.28
39432939--39433063	45	2.8	44	87	4	178	23	25	22	28	1.99
39433074--39433983	44	20.7	44	98	0	1718	27	18	20	33	1.96
39434020--39434183	50	3.3	50	71	1	150	25	24	21	28	1.99
39434274--39434379	50	2.1	49	79	5	113	26	23	21	28	1.99
39446865--39446906	23	1.9	22	85	9	59	64	7	7	21	1.43
39448289--39448328	10	3.8	11	78	21	50	65	12	2	20	1.38
39448413--39448447	17	2.2	16	90	10	54	60	8	0	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39448590--39448622	11	2.8	12	86	9	50	63	0	0	36	0.95
39448616--39448684	36	1.9	35	88	11	104	66	4	1	27	1.19
39448604--39448697	48	2.0	48	83	8	120	67	4	1	27	1.16
39448589--39448696	12	9.6	11	72	13	53	66	2	0	29	1.12
39448589--39448648	10	5.7	10	80	7	57	65	1	0	33	1.03
39450412--39450452	20	2.0	20	85	0	55	31	0	21	46	1.52
39456986--39457094	34	3.2	34	88	3	112	32	22	19	26	1.97
39457019--39457094	34	2.2	34	97	0	143	30	22	19	27	1.98
39460064--39460185	26	4.7	26	82	4	129	29	13	24	31	1.94
39460064--39460196	52	2.6	52	81	2	142	30	12	24	32	1.92
39460110--39460196	26	3.3	26	90	0	129	27	12	26	33	1.93
39463843--39463901	7	8.4	7	100	0	118	72	0	27	0	0.84
39465510--39465636	51	2.5	50	83	7	141	24	18	27	29	1.98
39472359--39472415	21	2.7	22	86	8	82	28	5	35	31	1.79
39472466--39472533	33	2.0	34	85	2	93	52	1	0	45	1.09
39479717--39479742	2	13.0	2	100	0	52	50	0	0	50	1.00
39480955--39480992	17	2.2	18	90	4	60	10	5	7	76	1.15
39480967--39481000	17	2.0	17	88	0	50	11	5	5	76	1.14
39481387--39481423	19	1.9	19	94	0	65	18	2	0	78	0.87
39483838--39483874	15	2.5	15	91	4	58	32	0	0	67	0.91
39484138--39484291	50	3.1	50	73	7	159	23	18	22	35	1.95
39484288--39484826	175	3.1	174	90	1	837	28	19	19	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39484667--39484950	129	2.2	129	94	0	496	29	18	19	32	1.96
39490855--39490904	24	2.1	24	100	0	100	34	12	24	30	1.91
39500474--39500502	14	2.1	14	100	0	58	58	13	13	13	1.63
39501005--39501043	15	2.8	14	85	11	53	30	0	0	69	0.89
39505967--39506000	16	2.1	16	88	0	50	35	20	2	41	1.68
39506055--39506095	20	2.1	19	86	4	55	39	24	0	36	1.56
39506781--39506826	16	3.0	15	84	9	58	23	8	2	65	1.32
39506782--39506829	15	3.2	14	82	11	60	25	6	2	66	1.26
39512943--39512983	18	2.3	18	87	8	57	9	7	9	73	1.26
39513346--39513437	43	2.2	42	92	5	152	43	5	21	29	1.75
39521745--39521773	15	1.9	15	100	0	58	48	17	13	20	1.81
39524431--39524562	35	3.7	35	87	1	183	38	30	12	18	1.88
39524421--39524574	70	2.2	71	80	1	193	39	29	11	18	1.87
39524576--39524601	13	2.0	13	100	0	52	53	7	23	15	1.67
39529754--39529819	18	3.6	18	73	15	55	71	1	3	24	1.09
39531825--39531884	30	2.0	30	96	0	111	68	1	3	26	1.15
39531828--39531883	15	3.4	18	68	27	61	69	1	3	25	1.14
39532279--39532303	13	1.9	13	100	0	50	44	32	0	24	1.54
39532710--39532770	29	2.1	29	81	0	68	29	3	3	63	1.26
39533332--39533367	2	18.0	2	94	0	63	50	47	0	2	1.15
39534974--39535070	42	2.3	42	80	3	115	40	15	25	18	1.90
39536999--39537089	25	3.6	25	79	4	94	21	24	7	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39538039--39538065	9	3.0	9	100	0	54	33	22	0	44	1.53
39542507--39542601	42	2.3	42	94	0	163	27	25	18	28	1.98
39542751--39542828	32	2.4	32	91	4	120	37	11	2	48	1.53
39543501--39543871	185	2.0	186	99	0	735	39	16	5	38	1.72
39552113--39552143	12	2.6	12	100	0	62	0	6	19	74	1.03
39552137--39552188	24	2.2	24	82	6	61	1	7	9	80	0.97
39568137--39568195	21	2.8	21	76	0	73	40	15	25	18	1.90
39568123--39568241	42	2.8	42	84	2	141	43	18	20	17	1.88
39575319--39575363	18	2.5	18	82	7	56	42	15	0	42	1.47
39578267--39578301	15	2.4	15	90	4	54	48	0	8	42	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128