genome.fa.s12.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  39  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12114227--12114360	44	3.1	43	63	12	110	24	26	22	26	2.00
12113917--12114528	265	2.3	266	90	0	938	26	25	19	28	1.99
12114099--12114502	45	9.1	45	64	6	151	26	25	19	29	1.99
12121497--12121541	3	14.7	3	95	4	81	66	0	0	33	0.92
12123045--12123078	14	2.4	14	90	9	52	67	2	0	29	1.05
12129781--12129873	29	3.2	29	72	17	95	25	23	19	31	1.98
12129722--12129891	57	3.0	57	80	5	184	26	26	16	30	1.97
12129793--12129881	29	3.1	29	76	9	110	23	24	17	33	1.96
12131699--12131791	29	3.2	29	75	14	102	25	21	20	32	1.98
12131695--12131827	57	2.3	57	82	0	167	27	23	18	31	1.97
12138255--12138319	27	2.4	27	78	12	71	35	15	7	41	1.76
12141680--12141925	127	1.9	127	93	0	420	33	18	13	35	1.89
12144923--12144962	15	2.7	15	100	0	80	15	27	0	57	1.38
12151170--12151258	43	2.1	43	86	0	124	17	17	20	43	1.88
12158899--12158981	42	2.0	42	97	0	157	27	6	31	34	1.81
12164086--12164115	15	1.9	16	93	6	53	53	20	0	26	1.46
12164160--12164200	22	1.9	21	85	14	57	46	29	2	21	1.64
12167124--12167163	19	2.1	19	95	0	71	37	22	15	25	1.93
12180540--12180771	124	1.9	124	93	1	403	28	11	21	39	1.87
12186832--12186859	13	2.2	13	100	0	56	64	0	14	21	1.29
12187977--12188150	24	7.2	25	74	8	164	17	27	20	35	1.95
12187977--12188149	48	3.6	48	96	2	303	17	27	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12190388--12190431	23	1.9	22	82	17	54	36	25	0	38	1.56
12190476--12190569	45	2.1	45	89	0	143	31	23	19	25	1.98
12190572--12190791	101	2.2	102	78	6	232	30	27	15	27	1.96
12203868--12204495	312	2.0	313	99	0	1249	39	13	10	36	1.79
12205331--12205364	17	2.1	17	94	5	61	50	0	0	50	1.00
12211089--12211134	24	2.0	24	82	4	58	58	0	0	41	0.98
12211299--12211337	20	2.0	19	90	5	60	58	0	2	38	1.12
12221046--12221103	4	14.5	4	100	0	116	50	24	0	25	1.50
12221379--12221407	2	14.5	2	100	0	58	48	0	0	51	1.00
12222710--12222760	12	4.2	12	80	5	59	17	23	5	52	1.66
12223008--12223353	50	6.9	50	94	0	566	21	32	21	25	1.98
12224831--12225026	93	2.1	94	99	0	385	46	2	1	50	1.19
12233946--12234028	37	2.3	37	95	2	150	37	18	15	28	1.91
12235312--12235365	8	6.6	8	80	4	54	70	0	1	27	0.98
12235539--12235586	24	2.0	25	87	4	71	45	2	33	18	1.61
12245063--12245192	65	2.0	65	100	0	260	49	15	16	18	1.80
12245262--12245297	17	2.1	17	90	10	56	38	44	0	16	1.48
12250705--12250791	43	2.0	43	84	0	111	22	24	28	24	1.99
12252161--12252226	20	3.3	20	76	16	73	39	21	24	15	1.91
12252138--12252236	40	2.5	40	86	0	135	40	21	25	13	1.89
12252172--12252238	20	3.4	19	76	15	73	37	22	25	14	1.93
12263071--12263123	27	2.0	27	92	0	88	39	15	28	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12268935--12268976	20	2.2	19	87	12	59	19	21	4	54	1.62
12286682--12286716	18	1.9	18	88	11	54	11	22	40	25	1.88
12297295--12297319	12	2.1	12	100	0	50	16	16	28	40	1.89
12297320--12297482	29	5.6	29	86	0	218	26	12	23	36	1.91
12297301--12297513	29	7.4	29	83	0	212	25	14	23	36	1.93
12297301--12297505	87	2.4	87	83	0	268	25	14	22	37	1.92
12301883--12301994	22	5.4	22	71	12	92	16	17	31	33	1.93
12301853--12302031	60	3.0	60	82	0	223	18	15	31	34	1.92
12308221--12308504	50	5.6	50	81	6	268	27	19	28	24	1.99
12308754--12308785	16	2.0	16	93	0	55	62	9	18	9	1.52
12309666--12309713	25	1.9	25	100	0	96	20	22	18	37	1.94
12324880--12325069	49	3.9	49	81	0	200	34	24	15	25	1.95
12327064--12327147	27	3.1	27	73	0	78	45	22	16	15	1.85
12327604--12327675	34	2.1	35	84	5	94	29	22	20	27	1.99
12333929--12333973	19	2.4	19	85	7	56	53	24	8	13	1.68
12339985--12340406	138	3.1	138	89	2	625	41	7	4	45	1.55
12344086--12344118	17	1.9	17	93	0	57	63	6	24	6	1.40
12344795--12344825	16	1.9	16	93	0	53	22	0	0	77	0.77
12345872--12346132	39	6.7	39	79	1	281	18	32	16	32	1.93
12345866--12346157	39	7.5	38	77	4	253	18	32	16	32	1.93
12345865--12346157	117	2.5	116	77	8	290	18	32	16	32	1.93
12371413--12371437	13	1.9	13	100	0	50	64	0	4	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12375863--12376121	129	2.0	130	99	0	511	42	12	6	38	1.68
12381268--12381326	22	2.7	22	86	0	82	35	20	27	16	1.94
12381806--12381974	85	2.0	86	83	3	216	27	17	22	33	1.96
12386275--12386299	7	3.6	7	100	0	50	28	0	12	60	1.32
12386650--12386683	18	1.9	17	88	5	50	26	23	17	32	1.97
12387462--12387572	35	3.2	35	65	14	102	41	0	13	44	1.50
12387469--12387578	25	4.6	25	67	19	90	42	0	13	42	1.50
12387425--12387578	70	2.2	69	96	1	281	44	0	12	42	1.46
12387597--12388166	29	20.4	29	80	14	630	44	27	0	26	1.58
12387584--12387665	23	3.3	23	75	18	74	42	28	0	29	1.56
12387597--12388166	88	6.8	87	82	11	630	44	27	0	26	1.58
12387736--12388195	51	8.6	51	73	14	311	45	26	0	27	1.60
12387662--12388195	80	6.5	78	81	13	429	44	27	0	26	1.59
12387985--12388030	22	2.2	20	88	11	67	45	28	0	26	1.54
12387618--12388166	183	2.8	184	82	10	663	44	27	0	26	1.58
12388145--12388190	22	2.2	20	88	11	67	45	28	0	26	1.54
12391394--12391744	126	2.8	124	90	4	537	33	22	15	29	1.94
12396361--12396415	9	6.1	9	89	0	83	30	10	12	45	1.77
12396361--12396415	18	3.1	18	94	0	92	30	10	12	45	1.77
12415216--12415283	21	3.2	21	68	13	59	60	0	0	39	0.97
12415222--12415276	28	2.0	28	86	13	78	67	0	0	32	0.91
12418266--12418311	24	1.9	24	95	0	83	32	10	15	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12423535--12423600	30	2.2	30	100	0	132	37	16	24	21	1.93
12423800--12424048	76	3.3	76	83	1	293	29	15	22	32	1.95
12423958--12424023	25	2.6	25	76	9	71	34	13	18	33	1.90
12425282--12425424	59	2.4	58	80	4	144	23	20	16	39	1.92
12425431--12425613	90	2.0	90	82	2	224	38	17	19	24	1.93
12425435--12425641	90	2.3	90	78	5	204	37	17	19	25	1.94
12425741--12425768	3	9.3	3	100	0	56	67	0	0	32	0.91
12428962--12429154	21	9.2	21	70	6	131	19	22	15	42	1.89
12428953--12429135	42	4.4	42	82	2	224	18	22	15	44	1.86
12428953--12429149	84	2.3	84	88	1	288	18	22	15	44	1.87
12432719--12432768	20	2.5	20	83	0	55	26	28	10	36	1.88
12435801--12435833	17	2.0	17	88	5	50	42	12	9	36	1.74
12447022--12447215	104	1.9	104	88	4	293	31	27	20	20	1.97
12447807--12448126	70	4.7	69	77	8	316	25	21	22	30	1.98
12447856--12448111	133	1.9	134	84	2	345	26	21	22	30	1.99
12448083--12448186	48	2.1	49	82	8	122	21	23	20	35	1.96
12448013--12448230	120	1.8	118	83	3	285	23	21	21	33	1.98
12448131--12448436	70	4.3	71	73	10	222	25	21	19	33	1.97
12448131--12448436	140	2.2	140	84	5	395	25	21	19	33	1.97
12455250--12455315	24	2.8	24	86	6	82	33	3	6	57	1.38
12457742--12457821	40	2.0	40	95	0	142	23	21	28	26	1.99
12467832--12467872	17	2.3	18	87	4	57	12	19	43	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12470187--12470349	45	3.6	44	85	3	184	41	12	15	29	1.85
12481404--12481669	132	2.0	133	99	0	525	43	7	6	42	1.57
12482200--12482316	58	2.0	58	94	0	207	36	17	10	35	1.83
12484118--12484248	69	1.9	69	87	3	192	16	35	17	30	1.93
12485383--12485422	19	2.2	18	86	13	55	50	2	0	47	1.14
12486146--12486193	15	3.3	15	75	13	55	79	4	8	8	1.06
12486155--12486210	16	3.7	15	75	13	53	76	1	7	14	1.07
12498309--12498372	21	3.1	21	76	10	69	20	23	26	29	1.99
12500072--12500104	6	5.3	6	96	3	57	48	21	0	30	1.50
12501325--12501365	3	13.7	3	84	0	55	36	2	2	58	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128