genome.fa.s12.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  45  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14148817--14148856	4	10.0	4	88	0	53	42	25	7	25	1.80
14153461--14153502	21	2.0	21	90	0	66	14	33	26	26	1.94
14153975--14154008	15	2.3	15	89	0	50	61	20	17	0	1.34
14165390--14165476	31	2.9	30	78	13	81	43	10	10	35	1.73
14166538--14166613	37	2.1	37	100	0	152	18	22	15	43	1.88
14167261--14167306	1	46.0	1	91	0	74	95	2	2	0	0.30
14169852--14170113	131	2.0	131	100	0	524	41	20	15	22	1.90
14171132--14171178	23	2.0	24	87	4	69	48	2	2	46	1.25
14173419--14173457	18	2.2	18	100	0	78	69	15	10	5	1.34
14178354--14178454	20	5.6	18	70	20	61	49	6	1	41	1.41
14178361--14178495	68	2.0	69	88	1	200	49	5	3	40	1.45
14185171--14185225	24	2.3	24	79	14	60	58	5	1	34	1.32
14185718--14185926	97	2.2	97	100	0	418	44	3	13	38	1.62
14186983--14187052	3	23.3	3	91	0	113	68	1	28	1	1.06
14187766--14187798	3	11.0	3	100	0	66	0	33	0	66	0.92
14187797--14187826	3	10.0	3	100	0	60	33	33	0	33	1.58
14188427--14188468	3	14.3	3	90	5	68	0	30	0	69	0.89
14188593--14188659	31	2.2	31	86	7	93	26	8	17	46	1.78
14189239--14189307	31	2.3	30	82	7	77	26	10	20	43	1.83
14187815--14190165	638	3.7	641	93	2	3953	30	14	17	37	1.90
14189867--14189935	31	2.3	31	85	7	88	26	8	20	44	1.80
14192857--14192915	6	8.4	7	82	14	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14204620--14204673	26	2.1	26	89	0	81	9	9	14	66	1.43
14207245--14207437	95	2.0	95	96	0	359	26	23	19	30	1.98
14213162--14213246	27	3.2	27	75	12	104	36	16	21	25	1.94
14213154--14213284	52	2.5	52	87	2	174	35	18	22	22	1.95
14213154--14213228	25	2.9	26	77	11	82	34	17	25	22	1.96
14213383--14213429	24	2.0	24	82	0	58	38	19	23	19	1.93
14213285--14213631	153	2.3	153	96	0	640	33	19	24	22	1.97
14213506--14213575	24	2.9	24	84	2	86	34	18	27	20	1.96
14213529--14213583	24	2.3	24	83	0	65	36	18	29	16	1.92
14220872--14220943	25	2.9	25	81	2	83	34	22	23	19	1.96
14220911--14220992	24	3.4	25	73	9	71	36	23	23	17	1.94
14222247--14222314	15	4.2	16	81	12	70	75	4	1	19	1.06
14222361--14222394	13	2.4	15	90	9	54	52	0	5	41	1.25
14223915--14223949	18	1.9	18	88	0	52	20	22	28	28	1.98
14224472--14225276	44	18.6	44	74	9	638	30	24	16	28	1.96
14224734--14224796	32	2.0	32	87	0	90	31	23	15	28	1.96
14224766--14225246	132	3.6	132	90	1	707	29	25	16	28	1.96
14239363--14239485	25	5.0	24	75	5	86	33	22	25	18	1.97
14239401--14239485	24	3.5	24	77	7	91	35	22	25	16	1.95
14240732--14240785	23	2.2	23	87	9	72	81	3	0	14	0.82
14240732--14240785	8	6.6	8	82	8	65	81	3	0	14	0.82
14240730--14240793	15	4.3	15	79	13	62	79	3	0	17	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14240763--14240800	20	1.9	19	89	5	58	81	2	2	13	0.90
14242214--14242248	18	1.9	18	88	0	52	20	22	28	28	1.98
14248862--14248927	25	2.7	25	83	2	80	25	24	19	30	1.98
14248873--14248939	25	2.7	25	86	4	82	28	23	22	25	1.99
14253402--14253445	20	2.2	20	91	0	70	38	4	2	54	1.33
14262969--14263114	74	2.0	75	95	1	267	34	9	30	25	1.88
14263378--14263423	24	1.9	24	86	0	65	45	17	26	10	1.81
14271414--14271795	84	4.5	85	75	11	330	29	20	22	27	1.98
14271296--14271918	128	4.8	127	79	7	628	29	19	23	27	1.98
14271296--14271914	44	14.3	43	71	10	295	28	19	23	27	1.99
14271296--14271795	259	1.9	259	92	0	838	29	19	23	26	1.98
14273512--14273560	22	2.1	25	85	11	68	30	2	4	63	1.24
14275613--14275664	26	2.0	26	100	0	104	26	3	26	42	1.73
14281337--14281365	12	2.4	12	100	0	58	20	17	6	55	1.65
14281614--14281853	50	4.7	50	81	4	239	22	28	22	25	1.99
14286748--14286793	24	1.9	24	100	0	92	17	23	21	36	1.94
14288869--14288897	12	2.4	12	100	0	58	20	17	6	55	1.65
14289146--14289385	50	4.7	50	82	3	255	21	28	22	27	1.99
14289096--14289385	50	5.7	50	79	4	235	22	27	22	28	1.99
14290693--14291202	140	3.6	139	84	0	624	27	18	21	32	1.96
14294590--14294823	35	6.5	34	74	15	177	21	18	17	42	1.89
14294600--14294890	37	7.9	35	74	13	155	21	18	17	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14294587--14294823	73	3.3	72	79	9	259	21	18	17	42	1.89
14299807--14299861	9	5.9	9	91	4	74	23	34	1	40	1.66
14299807--14299853	10	4.9	10	94	2	71	25	34	0	40	1.56
14299807--14299861	19	2.9	19	86	7	76	23	34	1	40	1.66
14300949--14301052	51	2.0	51	100	0	208	26	13	21	38	1.90
14305137--14305599	232	2.0	232	93	0	793	27	26	16	29	1.97
14306090--14306143	28	1.9	28	84	0	72	55	12	9	22	1.65
14313069--14313100	15	2.1	15	100	0	64	53	12	6	28	1.62
14322380--14322406	5	5.4	5	100	0	54	81	0	0	18	0.69
14329333--14329513	43	4.2	43	89	0	272	33	25	16	24	1.96
14329629--14329710	31	2.7	30	81	3	92	42	17	9	30	1.81
14332599--14332634	18	2.0	18	100	0	72	50	11	11	27	1.72
14335827--14336051	110	2.0	110	99	0	441	24	7	23	44	1.79
14342485--14342515	15	2.1	15	93	0	53	38	12	9	38	1.77
14345312--14345359	25	1.9	25	86	0	69	37	4	25	33	1.75
14345457--14345481	13	1.9	13	100	0	50	52	8	0	40	1.31
14346315--14346523	102	2.0	102	92	0	346	34	22	6	35	1.80
14349986--14350042	30	1.9	30	96	0	105	29	5	29	35	1.79
14349981--14350050	30	2.3	30	87	0	104	25	5	28	40	1.78
14353807--14353836	16	1.9	16	93	6	53	50	20	0	30	1.49
14355998--14356046	25	2.0	25	87	0	71	34	24	16	24	1.95
14356028--14356096	25	2.8	25	73	4	68	30	21	23	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14365862--14365917	22	2.5	22	85	0	76	39	17	28	14	1.89
14374410--14374458	15	3.3	15	72	11	55	30	24	20	24	1.98
14375139--14375180	21	2.0	22	90	4	68	26	4	9	59	1.48
14376241--14376268	14	2.0	14	100	0	56	50	0	7	42	1.30
14378881--14378905	10	2.5	10	100	0	50	80	0	0	20	0.72
14380834--14380875	23	2.0	22	86	13	61	42	4	7	45	1.52
14382871--14382935	30	2.2	30	85	0	85	26	33	24	15	1.95
14387882--14387923	13	3.2	13	83	12	50	16	7	0	76	1.00
14387875--14387923	21	2.3	21	89	10	73	18	6	0	75	1.00
14389272--14389300	12	2.4	12	100	0	58	6	6	17	68	1.34
14409065--14409126	24	2.5	24	82	7	72	48	0	3	48	1.17
14409090--14409137	24	2.0	24	84	8	62	52	2	4	41	1.32
14409404--14409464	18	3.3	18	82	11	79	70	3	18	8	1.26
14409413--14409464	9	5.8	9	79	0	50	73	3	17	5	1.19
14410786--14410822	2	18.5	2	94	0	65	0	45	0	54	1.00
14416843--14416923	40	2.0	40	100	0	162	24	12	12	50	1.74
14421226--14421259	17	2.0	17	94	0	59	52	8	17	20	1.71
14426234--14426262	13	2.1	14	93	6	51	10	6	13	68	1.37
14433062--14433093	16	2.1	16	94	5	57	84	0	15	0	0.63
14434308--14434488	46	3.9	46	100	0	362	32	19	4	43	1.71
14438854--14438913	28	2.2	27	84	3	75	23	25	23	28	2.00
14440552--14440577	12	2.2	12	100	0	52	34	7	7	50	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14449645--14449694	21	2.4	21	83	3	66	50	14	2	34	1.54
14449648--14449694	10	4.6	10	89	5	67	51	12	2	34	1.52
14459270--14459929	27	24.4	27	79	7	560	44	18	15	20	1.87
14460066--14460215	27	5.6	27	81	4	151	42	16	18	22	1.89
14459824--14460348	285	1.8	285	98	0	1023	32	14	20	31	1.93
14460066--14460215	81	1.9	81	85	2	212	42	16	18	22	1.89
14460602--14460775	28	6.2	29	87	5	243	24	22	22	30	1.99
14460614--14460775	84	1.9	84	92	0	270	22	22	24	30	1.99
14460774--14460836	33	1.9	33	96	0	117	31	23	19	25	1.98
14463962--14464072	45	2.5	45	84	0	150	25	18	18	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128