genome.fa.s12.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  102  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33940453--33940659	108	1.9	107	90	4	328	32	15	6	45	1.71
33942887--33942987	9	10.3	9	69	21	53	67	2	2	26	1.19
33942886--33942959	30	2.4	30	80	12	89	68	4	2	24	1.19
33942885--33942979	19	4.8	20	76	12	81	69	3	3	24	1.18
33943068--33943097	11	2.7	11	94	0	51	30	3	0	66	1.07
33943240--33943291	10	5.2	10	76	6	52	30	0	3	65	1.10
33943239--33943378	29	5.0	28	73	17	112	32	2	3	61	1.25
33943257--33943304	19	2.5	20	80	10	55	37	2	2	58	1.22
33943241--33943347	55	1.9	55	82	16	132	31	2	2	62	1.24
33943505--33943747	89	2.7	87	77	8	238	30	11	22	35	1.89
33943771--33943816	18	2.5	17	80	13	56	30	0	4	65	1.12
33943771--33943825	19	2.9	18	75	17	58	30	0	3	65	1.10
33944222--33944390	82	2.0	82	81	8	194	34	7	18	39	1.78
33947006--33947112	50	2.2	50	86	1	144	42	19	14	23	1.87
33960796--33960842	16	3.0	15	84	9	58	74	2	8	14	1.15
33984886--33984935	22	2.3	22	83	13	59	36	46	2	16	1.58
33990232--33990363	66	2.0	66	95	0	237	43	12	14	30	1.82
33990852--33990898	20	2.3	20	85	0	58	25	29	19	25	1.98
33999295--33999338	20	2.2	20	87	0	61	25	15	18	40	1.90
34025709--34025840	51	2.6	50	86	5	169	27	14	28	30	1.95
34025709--34025847	49	2.7	51	85	6	176	28	14	27	30	1.95
34030708--34030745	20	1.9	19	89	5	58	34	18	23	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34030817--34030861	12	4.0	11	83	13	56	68	13	2	15	1.30
34030897--34030934	12	3.0	12	85	14	58	57	0	18	23	1.40
34030897--34030935	14	3.0	13	89	10	62	58	0	17	23	1.38
34032063--34032108	18	2.5	18	85	3	56	63	2	23	10	1.38
34032294--34032319	9	2.9	9	100	0	52	46	7	34	11	1.69
34034767--34034806	13	3.0	13	92	7	71	60	0	17	22	1.37
34063071--34063291	51	4.4	51	76	10	193	30	13	24	31	1.93
34069344--34069378	9	3.9	9	88	0	52	68	11	8	11	1.39
34078658--34078707	22	2.2	23	85	3	66	80	12	8	0	0.92
34078657--34078724	23	3.2	22	72	14	61	79	14	5	0	0.91
34092715--34092768	20	2.7	20	73	2	54	48	11	5	35	1.62
34096060--34096121	31	2.0	31	87	9	90	22	12	3	61	1.46
34101041--34101101	10	6.1	10	74	12	54	32	13	24	29	1.93
34101042--34101102	20	3.0	20	83	9	79	32	13	26	27	1.93
34101046--34101122	30	2.5	30	81	6	84	29	15	29	24	1.96
34104669--34104707	15	2.5	15	91	4	60	17	7	10	64	1.48
34105854--34105914	10	6.1	10	74	12	54	32	13	24	29	1.93
34105855--34105915	20	3.0	20	83	9	79	32	13	26	27	1.93
34108787--34108824	17	2.2	17	95	0	67	10	2	31	55	1.48
34113995--34114081	25	3.5	24	82	4	93	24	22	20	32	1.98
34113992--34114093	50	2.1	49	83	5	125	24	22	19	33	1.97
34114010--34114101	25	3.7	25	77	18	86	27	25	19	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34116555--34116648	46	2.0	46	95	0	170	24	20	21	34	1.97
34130685--34130751	22	3.1	22	82	4	73	28	13	20	37	1.91
34131465--34131510	21	2.2	21	100	0	92	15	8	43	32	1.77
34134503--34134550	24	2.0	24	88	8	71	45	0	43	10	1.38
34135603--34135704	33	3.2	33	72	13	124	15	3	15	64	1.43
34135606--34135704	28	3.4	28	68	22	85	16	4	16	63	1.45
34135599--34135719	61	2.0	61	100	0	242	15	3	16	64	1.42
34138030--34138054	11	2.3	11	100	0	50	36	12	24	28	1.91
34143213--34143460	137	1.8	137	86	3	365	33	25	20	20	1.97
34148653--34148698	22	2.1	22	100	0	92	26	13	4	56	1.55
34152864--34152914	8	6.6	8	80	13	54	41	1	0	56	1.10
34157894--34157935	22	1.9	22	90	0	66	61	9	9	19	1.53
34160432--34160473	20	2.2	19	87	12	59	45	0	0	54	0.99
34170773--34170812	20	2.0	20	90	0	62	42	22	27	7	1.80
34176224--34176262	19	2.1	19	95	0	69	43	23	7	25	1.80
34179779--34179844	26	2.5	26	90	0	96	24	25	25	24	2.00
34191074--34191129	25	2.2	26	79	17	73	62	1	1	33	1.16
34191796--34191837	22	2.1	19	86	13	57	52	0	2	45	1.13
34211309--34211492	40	4.6	40	84	2	226	34	15	30	18	1.92
34211309--34211508	80	2.5	79	84	4	258	34	16	29	19	1.94
34211439--34211492	20	2.7	20	74	5	56	38	14	31	14	1.87
34214661--34214709	25	2.0	25	84	15	66	26	12	12	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34215918--34215981	28	2.3	28	80	0	83	17	21	35	25	1.95
34226764--34226790	13	2.1	13	100	0	54	37	18	37	7	1.79
34227145--34227188	19	2.4	18	80	3	52	63	6	4	25	1.38
34230590--34230786	30	6.6	30	73	9	127	40	14	22	22	1.90
34230579--34230755	60	3.0	59	67	14	148	38	14	23	23	1.91
34230551--34230851	120	2.5	118	81	3	336	39	14	22	22	1.91
34240451--34240532	42	2.0	42	87	4	121	23	28	34	14	1.94
34245561--34245611	17	3.1	17	80	13	61	56	0	27	15	1.39
34246701--34246751	17	2.9	18	77	13	61	29	1	0	68	1.00
34261402--34261446	20	2.2	21	88	7	67	46	20	4	28	1.69
34262802--34263365	131	4.3	131	84	2	738	37	13	15	33	1.87
34277039--34277228	72	2.6	72	89	2	274	30	28	15	25	1.96
34281785--34281811	14	1.9	14	100	0	54	33	22	14	29	1.94
34288477--34288626	72	2.1	73	91	1	239	34	26	14	24	1.93
34293687--34293824	74	1.9	74	84	3	188	31	18	21	27	1.97
34297710--34297825	58	2.0	58	91	0	187	19	15	19	44	1.86
34300866--34300938	26	2.9	24	80	13	85	32	21	26	19	1.97
34301378--34301419	21	2.0	21	90	0	66	40	23	0	35	1.55
34303227--34303287	21	2.9	22	79	15	76	4	19	3	72	1.18
34303227--34303287	22	2.9	22	79	15	67	4	19	3	72	1.18
34303227--34303284	20	2.8	20	77	17	55	5	20	1	72	1.13
34314068--34314110	18	2.2	20	92	8	72	37	0	18	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34315700--34315863	44	3.6	46	81	8	174	31	22	18	27	1.97
34315744--34315863	44	2.7	44	92	0	186	30	23	20	25	1.99
34315952--34316698	50	15.1	50	68	6	349	25	23	23	28	1.99
34315946--34316698	100	7.6	99	84	3	901	24	22	23	28	1.99
34315946--34316698	392	1.9	397	86	3	1072	24	22	23	28	1.99
34316999--34317044	24	1.9	24	90	0	74	28	17	15	39	1.90
34316995--34317052	24	2.4	24	79	0	71	29	20	15	34	1.94
34321306--34321362	20	2.8	20	76	5	53	42	14	7	36	1.72
34321488--34321513	13	2.0	13	100	0	52	46	23	7	23	1.78
34324367--34324397	12	2.6	12	94	0	53	19	6	3	70	1.22
34325962--34325987	13	2.0	13	100	0	52	46	23	7	23	1.78
34326051--34326087	17	2.1	18	90	5	58	48	10	0	40	1.38
34328593--34329039	222	2.0	223	99	0	887	19	21	19	40	1.91
34329069--34329120	19	2.7	20	82	5	63	46	11	17	25	1.81
34331422--34331464	18	2.2	20	92	8	72	37	0	18	44	1.50
34334795--34334858	22	2.9	22	83	0	83	35	6	32	25	1.81
34335707--34335748	10	4.3	10	78	6	50	28	11	23	35	1.91
34382362--34382402	10	3.6	12	81	18	52	68	2	17	12	1.31
34382493--34382564	33	2.2	33	85	5	92	54	4	27	13	1.58
34424364--34424403	12	3.3	12	89	0	62	30	5	0	65	1.14
34424436--34424469	18	1.9	17	88	5	50	23	2	2	70	1.15
34435161--34435202	17	2.4	17	88	4	57	35	19	33	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34435172--34435210	17	2.3	17	95	0	69	35	10	35	17	1.84
34436654--34437058	45	9.0	45	86	2	483	28	17	24	29	1.97
34438820--34438851	12	2.7	12	100	0	64	34	6	6	53	1.51
34438867--34438892	9	2.9	9	100	0	52	23	19	0	57	1.40
34448364--34448390	13	2.1	13	100	0	54	44	0	7	48	1.31
34449792--34449869	10	7.8	10	73	11	70	32	2	0	65	1.06
34449796--34449870	9	7.7	9	75	14	60	32	2	0	65	1.07
34449796--34449899	19	5.3	20	75	10	90	32	1	0	64	1.11
34449792--34449870	40	2.0	39	87	2	113	32	2	0	64	1.07
34449796--34449893	30	3.3	29	77	4	88	32	2	1	64	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128