genome.fa.s12.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  97  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32174527--32174555	13	2.2	13	100	0	58	13	17	31	37	1.89
32180010--32180067	24	2.3	26	82	8	66	31	6	10	51	1.62
32185040--32185326	142	2.0	143	99	0	567	29	20	18	32	1.96
32186105--32186135	9	3.4	9	90	0	53	25	12	22	38	1.90
32187782--32187837	22	2.5	22	82	0	58	66	14	8	10	1.45
32204863--32204887	12	2.1	12	100	0	50	0	8	0	92	0.40
32206644--32206671	12	2.3	12	100	0	56	32	17	14	35	1.90
32207344--32207600	134	1.9	134	88	1	392	43	7	9	40	1.64
32207575--32207724	75	2.0	75	92	5	250	29	14	10	46	1.77
32212738--32212766	2	14.5	2	100	0	58	51	48	0	0	1.00
32213567--32213600	17	2.0	17	88	11	52	52	0	23	23	1.47
32215458--32215490	16	2.1	16	100	0	66	48	0	30	21	1.50
32217124--32217153	10	3.0	10	90	0	51	10	0	26	63	1.26
32227400--32227429	10	3.0	10	90	0	51	10	0	26	63	1.26
32230432--32230656	27	8.5	26	83	4	256	21	17	16	43	1.88
32234280--32234751	130	3.6	130	97	0	856	47	4	5	42	1.47
32234719--32234767	17	2.6	19	84	12	57	51	0	2	46	1.12
32237301--32237329	12	2.3	13	94	5	51	20	6	6	65	1.40
32243279--32243325	23	2.0	23	100	0	94	21	8	40	29	1.83
32245787--32245902	42	2.7	43	82	1	144	31	25	18	25	1.98
32251714--32251835	43	2.9	42	81	4	147	27	18	25	28	1.98
32251718--32251871	43	3.7	42	79	4	141	30	16	25	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32253428--32253484	27	2.1	27	100	0	114	45	14	12	28	1.80
32257137--32257169	17	1.9	17	93	0	57	21	6	6	66	1.35
32261706--32261755	23	2.2	24	80	20	63	58	6	0	36	1.23
32263111--32263468	31	11.7	31	89	3	530	43	18	9	28	1.81
32263111--32263479	61	6.0	61	92	1	571	43	18	9	27	1.81
32270740--32271160	31	13.7	31	87	2	593	44	18	8	28	1.78
32270740--32271171	61	7.0	61	90	1	650	45	18	8	28	1.78
32273402--32273564	42	3.8	42	76	4	130	24	17	25	32	1.97
32279990--32280021	2	16.0	2	100	0	64	50	0	0	50	1.00
32282697--32282997	161	1.9	162	98	0	586	48	26	8	16	1.75
32290852--32290956	49	2.1	49	92	0	174	51	9	9	29	1.66
32292775--32292840	33	2.0	33	96	0	123	37	3	18	40	1.66
32293050--32293086	19	1.9	19	94	0	65	35	0	21	43	1.53
32292864--32293442	219	2.7	212	81	10	553	41	9	7	40	1.67
32293610--32293644	18	1.9	18	88	0	52	37	0	5	57	1.23
32293867--32293895	13	2.2	13	100	0	58	48	20	6	24	1.74
32296782--32296835	25	2.1	26	86	3	74	46	1	5	46	1.37
32303854--32303933	39	2.1	39	97	0	151	42	5	2	50	1.37
32304821--32304866	21	2.2	21	84	7	58	41	2	0	56	1.11
32306587--32306633	23	2.0	23	100	0	94	12	21	29	36	1.91
32307502--32307558	24	2.3	24	87	6	87	22	8	17	50	1.73
32308567--32308616	24	2.1	24	96	0	91	40	20	14	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32309041--32309071	16	1.9	16	93	0	53	22	29	9	38	1.86
32312325--32312489	43	3.9	42	80	7	163	27	14	25	32	1.95
32316744--32316774	16	1.9	16	100	0	62	61	6	6	25	1.45
32318920--32318983	29	2.2	29	81	13	78	67	3	18	10	1.34
32325791--32326032	43	5.6	43	81	5	267	28	28	17	25	1.97
32325791--32326020	85	2.7	85	79	7	250	29	29	17	24	1.97
32332270--32332382	41	2.8	41	95	0	199	32	27	20	19	1.97
32332482--32332558	40	1.9	40	86	5	111	19	19	23	37	1.94
32332562--32332587	12	2.2	12	100	0	52	53	30	7	7	1.57
32333131--32333156	7	3.7	7	100	0	52	0	11	0	88	0.52
32333862--32333962	49	2.1	47	82	10	127	30	15	6	46	1.72
32336791--32336821	9	3.4	9	90	0	53	25	12	22	38	1.90
32336875--32336911	9	4.1	9	89	0	56	45	10	10	32	1.74
32339452--32339551	49	2.0	49	82	3	121	31	16	11	42	1.82
32345798--32345822	12	2.1	12	100	0	50	20	0	8	72	1.10
32354082--32354122	16	2.6	16	80	0	55	53	7	9	29	1.60
32354459--32354495	14	2.8	13	87	4	56	70	0	2	27	1.01
32354848--32354884	19	1.9	19	88	0	56	45	0	2	51	1.15
32370217--32370302	45	1.9	45	87	0	127	36	23	13	26	1.93
32370313--32370499	51	3.7	49	78	9	198	29	27	17	25	1.97
32370311--32370495	101	1.8	101	89	3	291	30	27	17	24	1.97
32372208--32372245	19	2.0	19	90	10	60	52	10	10	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32375059--32375106	12	3.9	12	76	15	53	75	0	2	22	0.91
32396179--32396299	61	2.0	61	93	0	206	40	6	7	45	1.58
32399692--32399741	18	2.8	17	76	8	55	8	34	16	42	1.77
32403045--32403121	34	2.2	34	79	6	84	32	22	19	25	1.97
32403125--32403184	29	2.0	32	87	9	90	43	11	13	31	1.80
32403574--32403918	27	12.8	27	82	3	345	22	16	19	41	1.90
32403583--32403918	81	4.2	80	83	3	388	21	17	18	42	1.89
32411885--32411977	6	15.5	6	84	4	107	67	4	25	2	1.20
32411885--32411964	30	2.7	30	90	1	126	67	5	25	2	1.23
32416420--32416461	21	2.0	21	95	0	75	35	23	7	33	1.82
32432717--32433134	140	3.0	136	88	5	590	38	8	6	45	1.61
32437525--32437593	26	2.7	26	81	0	84	27	27	18	26	1.98
32443248--32443287	20	2.0	20	100	0	80	40	20	0	40	1.52
32445808--32445865	23	2.4	25	85	5	75	22	6	25	44	1.77
32447604--32447657	16	3.3	17	73	17	51	53	1	0	44	1.11
32448081--32448192	35	3.4	33	72	17	99	24	0	8	66	1.26
32448244--32448276	2	16.5	2	100	0	66	51	0	0	48	1.00
32452132--32452448	106	3.0	106	92	0	526	30	17	17	34	1.93
32463677--32464540	84	10.1	86	67	14	247	33	21	20	23	1.97
32463640--32464525	128	6.9	128	92	0	1432	33	21	20	24	1.97
32464906--32464948	4	10.5	4	80	5	50	18	2	2	76	1.00
32464906--32464948	17	2.6	16	88	3	59	18	2	2	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32466169--32466485	107	3.0	106	91	1	501	31	17	16	35	1.92
32474097--32474128	16	2.0	16	100	0	64	25	18	18	37	1.94
32475491--32475533	10	4.1	10	77	11	50	65	2	4	27	1.25
32476667--32476698	16	1.9	17	93	6	57	71	0	15	12	1.14
32478738--32478855	50	2.3	50	84	5	139	33	16	12	36	1.87
32482243--32482286	22	2.0	22	90	0	70	22	13	9	54	1.67
32482319--32482375	30	1.9	30	96	0	105	26	5	12	56	1.57
32482673--32482710	3	12.7	3	100	0	76	31	0	0	68	0.90
32489606--32489682	38	2.0	38	94	0	136	38	6	19	35	1.78
32489613--32489694	38	2.2	38	88	2	121	36	8	19	35	1.82
32489644--32489756	50	2.3	50	83	3	140	36	7	23	32	1.84
32495074--32495102	5	5.8	5	100	0	58	79	0	0	20	0.74
32496060--32496089	14	2.1	14	93	0	51	40	0	43	16	1.48
32515366--32515404	21	1.9	21	89	5	62	66	2	25	5	1.25
32522650--32522715	30	2.2	30	86	0	87	19	24	34	21	1.96
32523563--32523616	23	2.4	23	96	3	101	22	9	7	61	1.51
32527377--32527417	20	2.0	20	100	0	82	24	7	9	58	1.55
32529565--32529598	18	1.9	18	88	5	52	47	11	0	41	1.40
32532947--32533014	21	3.2	21	76	15	68	60	0	2	36	1.12
32534224--32534265	14	2.7	16	78	17	52	71	7	0	21	1.09
32537220--32537275	22	2.5	22	85	8	69	12	10	1	75	1.14
32537264--32537288	9	2.8	9	100	0	50	12	16	0	72	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32539208--32539245	6	6.2	6	96	3	67	15	18	0	65	1.27
32540143--32540186	23	1.9	23	100	0	88	31	11	22	34	1.90
32543641--32543710	27	2.6	27	76	13	65	57	2	14	25	1.51
32543830--32543884	23	2.4	24	75	9	60	58	0	7	34	1.26
32543891--32543947	24	2.3	25	79	8	64	54	1	8	35	1.42
32544878--32545045	42	4.0	42	100	0	336	45	16	9	28	1.79
32545796--32546041	131	1.9	131	87	2	368	26	26	19	27	1.99
32545745--32546041	132	2.2	132	84	3	375	26	25	19	28	1.98
32546044--32546537	45	11.0	45	88	1	708	30	24	16	28	1.97
32546044--32546537	224	2.2	224	88	3	717	30	24	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128