genome.fa.s12.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  60  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19125568--19125621	27	2.0	28	82	10	67	40	11	0	48	1.39
19130369--19130394	13	2.0	13	100	0	52	15	0	23	61	1.33
19131840--19131925	41	2.1	42	93	2	147	26	18	25	29	1.98
19131840--19131965	41	3.0	41	85	5	121	26	18	25	29	1.98
19132806--19132901	41	2.3	43	82	5	108	25	22	16	35	1.95
19142482--19142824	51	6.8	51	76	9	328	28	15	26	29	1.96
19142482--19142824	102	3.4	101	82	8	405	28	15	26	29	1.96
19149281--19149355	25	3.0	25	100	0	150	40	16	4	40	1.67
19149694--19149756	32	2.0	32	83	0	81	44	6	6	42	1.55
19149897--19149939	16	2.7	16	82	10	52	41	2	2	53	1.26
19159356--19159499	52	2.7	53	86	1	191	42	21	27	9	1.83
19160706--19161361	44	14.9	44	73	6	436	31	18	20	28	1.97
19160884--19161308	85	4.8	85	73	8	269	32	18	20	29	1.96
19161089--19161406	96	3.4	95	72	14	295	32	15	21	30	1.95
19161008--19161528	181	2.9	181	83	1	650	31	17	20	30	1.95
19162830--19162863	14	2.5	13	86	13	50	14	2	0	82	0.79
19162887--19162918	3	10.7	3	100	0	64	34	31	0	34	1.58
19163053--19163798	44	16.8	44	71	9	433	31	18	21	28	1.97
19163143--19163567	85	4.8	85	73	8	269	32	18	20	29	1.96
19163348--19163665	96	3.4	95	72	14	295	32	15	21	30	1.95
19163267--19163746	181	2.7	181	85	1	640	31	17	20	30	1.96
19164841--19165312	255	1.8	255	87	4	700	18	19	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19165495--19165556	23	2.7	22	75	5	61	33	3	3	59	1.29
19176032--19176075	16	2.7	16	92	3	70	63	2	20	13	1.40
19181564--19181664	51	2.0	51	94	0	175	28	15	19	35	1.93
19184276--19184399	46	2.7	46	88	0	176	29	23	10	36	1.88
19191186--19191313	46	2.8	46	89	1	186	28	24	9	37	1.86
19192747--19192771	13	1.9	13	100	0	50	80	0	4	16	0.87
19196237--19196632	82	4.9	82	83	6	475	30	11	10	46	1.74
19196255--19196632	159	2.3	162	86	4	516	31	11	10	46	1.74
19196255--19196685	82	5.4	81	82	6	427	30	11	10	47	1.74
19196255--19196685	159	2.7	158	82	6	492	30	11	10	47	1.74
19199511--19199545	16	2.1	17	89	5	54	25	5	11	57	1.56
19203416--19203446	16	2.0	16	93	6	55	25	6	16	51	1.68
19211478--19211503	3	8.7	3	100	0	52	65	0	34	0	0.93
19213309--19213404	41	2.3	43	81	3	115	31	25	19	23	1.98
19213481--19213515	7	5.1	7	93	6	54	60	2	0	37	1.12
19213481--19213515	13	2.6	13	90	4	52	60	2	0	37	1.12
19213491--19213547	23	2.5	24	80	8	64	56	1	1	40	1.20
19219789--19219846	29	2.0	29	93	0	98	27	17	17	37	1.92
19221274--19221351	15	5.4	14	70	23	56	46	30	0	23	1.53
19221274--19221378	21	4.9	21	73	14	81	44	31	0	22	1.59
19222926--19222980	7	7.7	7	75	4	56	32	45	0	21	1.52
19222927--19222980	21	2.5	21	85	11	74	33	44	0	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19222972--19223012	21	2.0	20	85	4	55	39	41	0	19	1.52
19223272--19223408	7	19.4	7	73	12	50	47	31	0	20	1.56
19223362--19223408	22	2.2	21	85	11	60	48	27	0	23	1.51
19223563--19223839	41	6.8	41	80	6	294	31	30	15	22	1.95
19223920--19223998	40	2.0	40	84	0	104	25	18	17	37	1.93
19225222--19225258	15	2.5	15	90	0	65	21	0	64	13	1.27
19225225--19225258	5	6.8	5	96	0	59	20	0	64	14	1.28
19225632--19225704	22	3.4	21	74	14	60	42	13	2	41	1.59
19245356--19245406	18	2.7	19	79	8	52	76	0	21	1	0.88
19247345--19247959	307	2.0	307	84	1	813	29	21	19	28	1.98
19249909--19249965	15	3.7	15	80	19	73	66	0	1	31	1.02
19249931--19249988	24	2.4	25	80	16	68	63	1	0	34	1.04
19252012--19252068	15	3.7	15	80	19	73	66	0	1	31	1.02
19252034--19252091	24	2.4	25	80	16	68	63	1	0	34	1.04
19254182--19254282	40	2.6	40	87	3	143	36	4	7	50	1.53
19257151--19257194	19	2.2	20	88	8	72	38	6	0	54	1.27
19259135--19259362	42	5.4	42	79	8	246	34	25	17	22	1.96
19259127--19259365	85	2.8	85	92	1	381	33	25	17	23	1.97
19263538--19263659	23	5.3	24	82	6	139	24	20	24	30	1.99
19263538--19263652	46	2.5	46	91	0	185	24	21	24	29	1.99
19267449--19267474	8	3.2	8	100	0	52	34	0	11	53	1.37
19277150--19277633	128	3.8	128	94	0	826	30	20	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19277601--19277688	44	2.0	44	84	6	115	28	20	26	25	1.99
19277624--19277742	44	2.7	44	82	2	141	28	16	23	31	1.96
19282991--19283042	20	2.5	21	87	12	72	9	23	21	46	1.80
19283005--19283051	20	2.3	20	88	3	67	6	27	25	40	1.80
19283928--19283957	11	2.9	10	90	9	51	13	0	26	60	1.34
19285831--19285926	37	2.6	37	78	14	99	30	26	2	41	1.67
19289569--19289680	45	2.5	45	91	5	190	48	14	0	37	1.44
19290837--19290862	7	3.7	7	100	0	52	57	15	0	26	1.38
19291721--19291823	51	2.0	51	94	0	179	31	21	21	26	1.98
19294797--19294837	19	2.2	20	78	13	50	26	0	0	73	0.84
19298306--19298332	3	9.0	3	100	0	54	0	33	0	66	0.92
19298331--19298377	3	15.7	3	100	0	94	31	34	0	34	1.58
19303095--19303191	25	3.9	25	78	10	101	22	22	18	36	1.95
19310524--19310725	40	5.1	40	85	0	262	18	31	17	33	1.94
19310524--19310723	80	2.5	80	90	0	294	18	31	17	33	1.93
19319650--19319705	22	2.5	23	82	5	69	35	7	16	41	1.75
19320368--19320462	37	2.6	37	82	0	109	38	13	15	31	1.87
19325066--19325183	33	3.5	33	84	2	155	39	37	9	13	1.77
19333463--19333497	12	2.9	12	91	0	52	40	22	37	0	1.55
19339034--19339074	20	2.0	21	90	4	66	31	31	9	26	1.89
19338324--19340804	825	3.0	825	95	0	4379	40	21	14	23	1.91
19340684--19340722	20	2.0	20	94	0	69	30	33	10	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19341396--19341469	31	2.3	32	90	4	114	33	14	4	47	1.64
19345176--19345208	3	11.0	3	100	0	66	66	0	0	33	0.92
19347968--19347993	6	4.3	6	100	0	52	0	15	0	84	0.62
19353791--19353823	15	2.2	15	100	0	66	48	21	6	24	1.72
19355340--19355398	25	2.4	25	88	0	82	33	16	25	23	1.96
19359786--19359851	13	5.1	13	79	0	51	34	24	7	33	1.84
19361998--19362022	13	1.9	13	100	0	50	8	12	0	80	0.92
19362049--19362097	23	2.1	23	100	0	98	32	18	16	32	1.93
19363056--19363102	17	2.9	15	82	14	58	23	4	2	70	1.16
19363055--19363104	13	3.6	14	79	15	59	22	4	2	72	1.12
19364344--19365102	387	2.0	374	93	3	1277	39	14	11	34	1.82
19366588--19366666	9	8.6	9	79	5	86	39	27	7	25	1.83
19366588--19366653	27	2.4	27	84	0	96	39	30	7	22	1.82
19366667--19366833	37	4.5	37	89	6	250	49	12	4	33	1.62
19366667--19366833	75	2.3	74	89	6	250	49	12	4	33	1.62
19371235--19371308	36	2.1	36	97	0	139	41	13	8	36	1.74
19374238--19374279	21	2.0	21	86	9	59	61	7	7	23	1.47
19382834--19382882	25	2.0	23	81	14	55	53	12	4	30	1.57
19391196--19391243	9	5.7	9	76	18	50	33	39	0	27	1.57
19391181--19391243	33	1.9	32	96	3	117	31	39	0	28	1.57
19393147--19393230	40	2.2	40	81	12	97	63	2	4	29	1.28
19394890--19396999	100	21.1	100	92	0	3065	23	26	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19398357--19398400	15	3.1	15	87	12	58	13	18	0	68	1.22
19398359--19398400	7	6.0	7	79	20	52	14	16	0	69	1.20
19402650--19402685	14	2.6	14	86	0	54	72	0	8	19	1.10
19402815--19402859	23	2.0	23	86	8	65	62	13	0	24	1.31
19409732--19409800	21	3.3	21	76	8	68	42	33	10	14	1.79
19418035--19418073	19	2.1	19	100	0	78	30	20	5	43	1.73
19418200--19418337	25	5.5	25	75	10	120	34	20	25	20	1.97
19418200--19418337	50	2.8	50	84	2	152	34	20	25	20	1.97
19421907--19421940	15	2.3	15	100	0	68	58	11	0	29	1.33
19425246--19425279	17	2.0	17	100	0	68	17	11	35	35	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128