genome.fa.s12.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  11  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3269950--3269976	7	3.9	7	100	0	54	70	14	0	14	1.17
3269952--3270128	14	12.4	14	71	11	63	48	28	1	22	1.58
3270258--3270314	15	3.9	14	72	22	55	35	40	1	22	1.65
3270336--3270372	15	2.5	15	95	4	67	32	40	0	27	1.57
3270728--3270960	41	5.7	41	87	0	306	28	29	18	23	1.98
3271002--3271106	39	2.6	39	83	5	131	23	21	18	36	1.95
3271247--3271301	27	2.0	27	89	0	83	34	30	10	23	1.89
3273411--3273608	41	4.7	42	80	7	224	20	18	26	34	1.96
3273408--3273563	84	1.9	84	97	0	294	21	17	26	34	1.96
3279839--3279876	12	3.3	12	78	14	53	68	0	13	18	1.21
3279935--3280015	6	14.0	6	74	14	64	75	6	1	17	1.07
3279935--3280015	18	4.7	17	76	13	85	75	6	1	17	1.07
3279938--3280003	24	2.8	24	80	13	75	75	7	1	15	1.09
3280767--3280802	15	2.5	15	90	4	56	66	2	0	30	1.06
3280766--3280809	15	2.8	15	78	21	54	68	4	0	27	1.09
3280766--3280813	16	3.0	16	77	16	55	66	4	0	29	1.10
3281133--3281172	11	3.7	11	83	6	55	27	2	0	70	1.01
3281133--3281173	21	2.0	21	95	0	73	26	2	0	70	0.99
3289288--3289318	2	15.5	2	93	0	53	51	0	0	48	1.00
3289540--3289640	51	1.9	53	88	4	152	26	12	31	28	1.93
3290886--3290986	51	1.9	53	88	4	152	26	12	31	28	1.93
3292247--3292271	10	2.5	10	100	0	50	36	0	8	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3292288--3292350	19	3.6	17	77	10	56	33	0	6	60	1.22
3292336--3292402	19	3.5	20	75	18	63	34	0	5	59	1.22
3293171--3293197	14	1.9	14	100	0	54	22	3	0	74	0.98
3301363--3301388	2	13.0	2	100	0	52	50	0	0	50	1.00
3301721--3301831	41	2.7	41	90	2	170	20	18	29	30	1.97
3302164--3302196	14	2.3	15	94	5	59	30	0	33	36	1.58
3302296--3302335	7	5.9	7	88	2	55	20	2	47	30	1.63
3302386--3302465	7	11.4	7	82	0	70	17	0	45	37	1.49
3302419--3302473	21	2.6	21	82	5	58	21	0	45	32	1.52
3302694--3302787	46	2.0	46	95	0	170	48	0	7	43	1.31
3302706--3302780	20	3.5	20	65	19	51	50	0	5	44	1.24
3305776--3305814	17	2.3	17	90	0	60	84	5	10	0	0.76
3308384--3308409	3	8.7	3	100	0	52	34	30	0	34	1.58
3309678--3309872	41	4.8	41	85	2	275	24	20	27	28	1.99
3310411--3310454	7	6.4	7	86	5	54	15	2	45	36	1.59
3310403--3310454	14	3.8	13	84	5	50	17	3	44	34	1.67
3310411--3310451	20	2.0	20	85	0	55	14	2	46	36	1.58
3310629--3310701	7	10.6	7	84	12	80	27	0	45	27	1.54
3310651--3310692	13	3.2	13	93	6	75	30	0	40	28	1.57
3310629--3310701	27	2.7	26	83	14	85	27	0	45	27	1.54
3310652--3310692	20	2.0	20	95	4	73	29	0	41	29	1.56
3315078--3315162	21	4.2	20	78	12	68	24	2	5	67	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3315078--3315128	20	2.5	19	81	15	57	25	1	7	64	1.31
3316041--3316100	30	2.0	30	96	0	111	33	6	25	35	1.82
3316345--3316478	43	3.1	43	90	0	196	26	20	23	29	1.99
3317467--3317707	122	2.0	121	90	0	383	43	7	10	38	1.67
3318130--3318180	2	25.5	2	88	7	77	50	1	1	45	1.24
3324011--3324048	19	2.0	20	89	5	60	21	2	0	76	0.91
3326995--3327112	60	2.0	60	89	0	182	30	11	19	38	1.86
3327685--3327725	20	2.0	21	85	4	57	12	63	0	24	1.28
3328925--3329302	85	4.4	85	81	8	423	33	21	21	24	1.97
3328906--3329303	43	9.3	41	82	7	386	32	21	21	24	1.98
3328906--3329280	170	2.2	170	86	7	521	33	21	21	23	1.97
3329736--3329775	12	3.3	12	85	0	53	7	40	12	40	1.71
3329760--3329849	21	4.3	21	85	0	108	3	41	18	36	1.68
3336382--3336433	16	3.1	16	84	10	68	38	1	19	40	1.63
3336384--3336428	9	5.2	9	81	10	58	35	2	17	44	1.62
3336443--3336530	34	2.6	35	89	5	135	59	3	4	32	1.35
3339427--3339466	15	2.7	15	92	3	64	45	37	0	17	1.49
3339786--3340534	115	6.6	114	69	10	388	28	22	18	30	1.97
3340051--3340397	114	3.0	114	71	10	310	26	25	18	28	1.98
3339929--3340417	229	2.1	229	90	3	793	28	23	18	29	1.98
3342068--3342192	44	2.9	43	80	4	144	23	25	22	28	1.99
3342488--3342814	87	3.8	87	91	0	539	24	24	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3344990--3345073	36	2.4	36	78	9	93	14	8	7	70	1.33
3350086--3350152	25	2.5	28	71	11	68	55	2	4	37	1.36
3351614--3351680	21	3.2	21	71	12	57	23	0	2	73	0.97
3351770--3351803	3	11.3	3	100	0	68	32	0	0	67	0.91
3353216--3353288	6	12.0	6	91	2	74	16	0	9	73	1.07
3368010--3368127	59	2.0	59	98	0	227	38	12	10	38	1.77
3371300--3371346	15	3.1	16	72	12	53	23	34	29	12	1.92
3372093--3372123	15	2.0	16	93	6	55	45	12	6	35	1.68
3375435--3375475	13	3.2	13	78	21	50	14	7	7	70	1.31
3380164--3380208	22	2.1	21	84	12	56	4	13	4	77	1.07
3380766--3380795	3	10.0	3	92	0	51	33	3	0	63	1.11
3381279--3381334	24	2.4	24	82	5	71	39	3	0	57	1.16
3381290--3381344	16	3.4	16	80	16	60	34	1	1	61	1.17
3381291--3381335	7	6.0	7	80	14	54	33	2	0	64	1.06
3381349--3381637	149	2.0	146	91	7	475	28	5	9	56	1.54
3383044--3383069	11	2.4	11	100	0	52	50	7	42	0	1.31
3383790--3383877	39	2.2	40	84	9	110	36	7	18	37	1.80
3384379--3384508	45	2.9	45	90	0	197	19	18	21	40	1.91
3388427--3388488	6	10.3	6	96	0	106	30	32	37	0	1.58
3391708--3391783	27	2.8	27	88	4	109	21	38	23	17	1.93
3394690--3394719	6	5.0	6	100	0	60	0	33	0	66	0.92
3398483--3398676	94	2.1	94	97	0	361	41	12	12	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3400550--3400640	44	2.1	44	87	0	128	48	13	10	27	1.75
3403210--3403234	13	1.9	13	100	0	50	36	0	0	64	0.94
3403321--3403505	92	2.0	90	84	2	235	36	22	7	33	1.83
3403941--3404121	91	2.0	91	86	5	258	33	7	22	37	1.83
3405219--3405256	15	2.6	15	83	4	51	55	5	2	36	1.37
3406082--3406118	19	1.9	19	88	0	56	48	5	0	45	1.25
3408127--3408196	34	2.1	34	100	0	140	40	17	5	37	1.73
3409908--3409972	25	2.6	25	87	0	85	30	23	23	23	1.99
3411718--3411743	6	4.3	6	100	0	52	15	34	0	50	1.45
3412971--3413014	21	2.1	21	95	0	79	13	13	25	47	1.79
3415236--3415283	25	1.9	25	86	0	69	31	25	27	16	1.97
3419273--3419309	4	9.2	4	87	0	56	70	0	29	0	0.88
3419834--3419898	24	2.8	22	83	9	67	78	1	15	4	0.99
3419830--3419874	10	4.8	9	86	2	54	80	0	13	6	0.91
3419821--3419900	42	1.9	42	84	5	108	78	2	13	5	1.01
3419830--3419899	15	4.9	13	78	16	61	78	1	15	4	0.98
3419830--3419893	13	4.5	15	79	15	55	78	1	15	4	1.00
3420785--3420903	37	3.1	37	73	8	112	23	16	26	33	1.96
3428669--3428728	16	3.8	16	95	0	111	40	33	0	26	1.57
3434267--3434336	33	2.2	33	97	2	133	24	35	17	22	1.95
3435420--3435445	12	2.2	12	100	0	52	26	15	15	42	1.87
3440476--3440577	3	33.7	3	96	2	186	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3442561--3442593	13	2.6	13	90	4	50	39	3	0	57	1.14
3442632--3442693	31	2.0	31	84	6	81	72	4	16	6	1.23
3443613--3443746	40	3.4	38	72	9	110	26	14	24	33	1.95
3449483--3449516	4	8.8	4	93	6	61	76	0	23	0	0.79
3450834--3450899	33	2.0	33	82	11	82	39	1	1	57	1.17
3452750--3452986	27	8.8	27	75	5	176	32	17	27	22	1.96
3452750--3452978	81	2.8	83	82	3	243	33	17	26	22	1.96
3456214--3456269	13	4.5	13	78	13	73	46	14	1	37	1.55
3456212--3456256	23	2.0	23	90	0	72	44	15	2	37	1.59
3466163--3466193	3	10.3	3	92	0	53	67	0	29	3	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128