genome.fa.s12.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  114  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37957423--37958216	396	2.0	392	86	1	1009	30	17	22	28	1.97
37975797--37975842	16	2.8	17	77	12	51	52	4	0	43	1.21
37976477--37976637	79	2.0	80	98	1	315	31	12	6	49	1.65
37978569--37978594	3	8.7	3	100	0	52	30	0	0	69	0.89
37979217--37979252	19	1.9	19	88	5	56	61	0	11	27	1.30
37982126--37982478	107	3.4	105	83	8	434	22	27	22	26	1.99
37982127--37982482	50	6.8	50	80	9	356	22	28	22	26	1.99
37982582--37982606	13	1.9	13	100	0	50	56	8	4	32	1.47
37987625--37987767	41	3.3	43	95	4	254	30	15	24	29	1.95
38003374--38003407	17	1.9	18	88	5	52	5	26	32	35	1.81
38004956--38004990	15	2.3	15	90	0	52	57	20	14	8	1.63
38012196--38012272	38	2.0	38	100	0	154	35	10	12	41	1.78
38021268--38021317	24	2.1	24	96	0	91	40	14	18	28	1.89
38021599--38021714	43	2.7	42	82	16	148	28	31	19	20	1.97
38025746--38025835	33	2.7	33	87	3	128	27	27	24	20	1.99
38031517--38031571	28	2.0	28	85	7	76	54	9	10	25	1.64
38031737--38031763	5	5.4	5	100	0	54	18	0	18	62	1.32
38032243--38032361	44	2.7	44	78	13	127	26	26	20	26	1.99
38032112--38033076	217	4.5	217	85	5	1259	28	22	20	28	1.98
38032510--38032563	27	2.0	27	92	7	92	33	25	22	18	1.97
38032535--38033077	44	12.6	43	71	12	267	28	22	20	29	1.98
38032116--38033076	417	2.3	423	86	4	1308	28	22	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38045984--38046038	28	2.0	28	85	7	76	56	9	10	23	1.62
38046204--38046230	5	5.4	5	100	0	54	18	0	18	62	1.32
38062457--38062537	25	3.3	24	74	6	65	22	28	20	28	1.99
38062530--38062584	24	2.2	25	87	3	76	20	21	21	36	1.95
38065817--38065865	20	2.5	20	76	6	55	46	6	10	36	1.63
38074763--38074981	51	4.3	52	81	4	259	30	28	16	24	1.96
38074899--38074931	14	2.5	13	90	9	50	39	27	9	24	1.85
38078483--38078523	19	2.2	19	86	0	55	70	7	14	7	1.31
38078659--38078716	27	2.1	27	90	0	89	29	1	10	58	1.41
38084142--38084186	22	2.0	22	100	0	90	35	13	17	33	1.89
38087777--38087826	2	25.0	2	87	0	73	50	44	0	6	1.26
38095460--38095561	25	4.1	25	100	0	204	24	23	19	32	1.98
38096217--38096241	11	2.3	11	100	0	50	92	0	0	8	0.40
38100124--38100164	19	2.1	20	86	4	57	31	9	2	56	1.45
38106752--38106792	19	2.1	20	86	4	57	31	9	2	56	1.45
38109871--38109910	16	2.7	15	85	11	55	30	2	2	65	1.19
38111820--38111864	21	2.2	21	92	4	74	24	6	17	51	1.70
38113022--38113092	35	2.0	35	97	0	133	28	25	21	25	1.99
38114201--38114250	21	2.4	21	93	0	82	24	12	34	30	1.91
38118366--38118408	14	3.2	13	80	9	50	23	0	0	76	0.78
38118360--38118417	5	11.0	5	84	14	57	22	1	0	75	0.89
38118360--38118407	19	2.6	19	83	9	64	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38120771--38120809	20	1.9	21	89	5	62	41	15	2	41	1.61
38121847--38121897	24	2.1	24	100	0	102	35	15	21	27	1.94
38127967--38128056	32	2.8	32	66	14	78	44	11	11	33	1.75
38132916--38132959	17	2.5	17	85	7	52	50	13	2	34	1.55
38136921--38137017	37	2.6	37	87	8	135	12	15	30	41	1.84
38138969--38139114	75	1.9	75	88	0	220	22	24	22	30	1.99
38138969--38139153	75	2.5	75	82	3	203	23	25	22	28	1.99
38142738--38142784	20	2.3	20	85	7	60	25	25	4	44	1.72
38142753--38142794	20	2.2	20	91	4	68	26	21	0	52	1.47
38143130--38143380	20	12.9	20	70	15	107	19	16	8	55	1.66
38143203--38143261	19	3.1	19	76	13	75	22	16	6	54	1.66
38143190--38143283	39	2.4	39	83	7	118	23	17	5	54	1.63
38143405--38143532	20	6.4	20	69	3	69	21	12	13	53	1.72
38144202--38144320	20	5.8	20	69	10	80	61	7	8	22	1.50
38149563--38149605	22	2.0	22	85	0	59	39	4	16	39	1.69
38156096--38156185	6	15.3	6	70	11	53	76	3	3	16	1.05
38172616--38172647	2	16.0	2	93	0	55	50	0	3	46	1.17
38172716--38172746	2	15.5	2	93	0	53	51	0	3	45	1.17
38172608--38172804	99	2.0	98	97	3	369	37	2	26	34	1.68
38175816--38175856	20	2.0	21	86	13	59	34	7	0	58	1.26
38177249--38177368	31	4.0	28	75	14	89	51	12	2	33	1.53
38184026--38184086	1	61.0	1	90	0	95	0	4	0	95	0.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38193753--38193816	27	2.4	27	84	10	78	57	1	6	34	1.33
38194031--38194083	26	2.0	27	82	10	65	30	9	1	58	1.40
38194139--38194168	15	1.9	16	93	6	53	30	6	0	63	1.20
38194749--38194778	16	1.9	16	93	6	53	66	3	0	30	1.07
38194977--38195006	16	1.9	16	93	6	53	66	3	0	30	1.07
38194702--38195158	228	2.0	229	99	0	907	47	11	9	31	1.73
38200973--38201050	22	3.6	21	76	6	75	61	14	7	16	1.55
38201456--38201508	13	4.1	13	80	9	72	28	7	26	37	1.83
38206093--38206132	20	2.0	20	90	9	64	47	0	0	52	1.00
38207798--38207899	32	3.2	31	86	6	134	33	17	9	39	1.83
38208534--38208671	68	2.0	68	85	0	186	39	13	16	29	1.87
38208653--38209596	54	17.5	54	80	0	803	38	14	19	27	1.91
38208648--38209596	108	8.8	107	80	2	885	38	14	19	27	1.91
38211441--38211482	16	2.6	16	88	0	57	26	16	47	9	1.77
38212720--38212769	24	2.0	26	84	11	68	54	10	10	26	1.65
38212788--38212828	16	2.5	16	88	11	57	70	4	9	14	1.30
38214416--38214505	44	2.0	44	86	0	126	27	23	18	30	1.98
38214722--38215030	88	3.5	88	86	0	429	24	21	23	30	1.99
38216274--38216306	14	2.4	14	94	0	57	12	15	0	72	1.12
38217177--38217240	18	3.4	18	76	19	60	10	3	7	78	1.07
38217990--38218055	25	2.6	24	83	9	69	59	6	16	18	1.57
38221414--38221463	24	2.0	26	84	11	68	54	10	10	26	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38221482--38221522	16	2.5	16	88	11	57	70	2	9	17	1.25
38231807--38231856	24	2.0	26	84	11	68	54	10	10	26	1.65
38231875--38231915	16	2.5	16	88	11	57	70	4	9	14	1.30
38232749--38232774	9	2.9	9	100	0	52	80	0	0	19	0.71
38239899--38239935	11	3.2	12	85	11	51	56	5	5	32	1.45
38243584--38243633	25	2.0	25	84	0	64	42	0	2	56	1.11
38257895--38258051	42	3.8	40	78	4	118	54	14	10	21	1.69
38257913--38258051	20	6.8	21	76	1	113	53	14	10	21	1.69
38262058--38262106	20	2.5	20	89	0	71	51	20	6	22	1.69
38270951--38270989	16	2.4	16	82	0	51	43	2	10	43	1.52
38271039--38271729	344	2.0	346	97	1	1298	29	11	12	46	1.76
38288947--38288982	3	12.0	3	100	0	72	33	0	0	66	0.92
38288947--38289020	15	4.8	15	81	17	71	33	0	4	62	1.14
38298816--38298846	7	4.3	7	92	8	53	12	0	38	48	1.42
38298816--38298846	15	2.1	15	94	5	55	12	0	38	48	1.42
38299535--38299583	22	2.2	23	88	3	73	51	2	0	46	1.12
38299550--38299594	22	2.0	22	86	0	63	51	4	0	44	1.21
38299638--38299688	16	2.8	19	67	27	56	37	0	11	50	1.39
38299758--38299810	6	8.3	6	76	19	54	20	0	43	35	1.52
38299705--38299802	27	3.7	27	80	9	121	19	1	36	42	1.58
38300089--38300118	6	5.0	6	100	0	60	16	0	50	33	1.46
38300110--38300158	12	3.8	12	80	15	62	10	0	38	51	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38300025--38300130	18	5.4	18	65	14	59	17	0	35	45	1.56
38300106--38300160	27	2.0	27	100	0	110	10	0	40	49	1.38
38300165--38300204	7	5.9	7	83	16	57	52	0	0	47	1.00
38300162--38300204	12	3.3	12	78	15	50	53	0	0	46	1.00
38300133--38300684	294	1.9	294	90	1	883	35	12	14	37	1.85
38300459--38300498	7	5.9	7	83	16	57	57	0	0	42	0.98
38300456--38300498	12	3.3	12	84	15	59	58	0	0	41	0.98
38300693--38300737	21	2.1	21	87	0	63	2	24	44	28	1.66
38300840--38300923	27	2.8	29	82	12	100	22	1	32	44	1.61
38300849--38300998	33	4.5	34	71	17	125	21	0	34	43	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128