genome.fa.s12.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  42  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13154749--13154832	28	2.9	29	77	7	91	13	3	9	73	1.20
13154748--13154833	40	2.1	41	87	6	122	12	3	9	74	1.18
13158902--13158942	17	2.3	18	84	12	50	43	0	12	43	1.41
13158900--13158943	18	2.3	18	84	11	52	40	0	15	43	1.47
13158945--13158971	6	4.5	6	100	0	54	33	0	18	48	1.49
13160948--13161035	39	2.2	40	78	9	101	39	20	5	34	1.76
13161450--13161571	39	3.1	39	81	0	136	39	22	5	32	1.78
13163829--13163854	11	2.4	11	100	0	52	50	7	42	0	1.31
13164790--13164881	39	2.4	39	83	7	109	19	22	29	28	1.98
13170104--13170137	17	1.9	18	88	5	52	70	0	2	26	1.01
13170501--13170543	22	2.0	22	90	0	68	9	18	27	44	1.80
13170585--13170710	43	2.9	43	83	8	150	19	20	26	32	1.97
13170633--13170773	43	3.3	43	79	0	120	25	27	21	24	2.00
13170698--13170945	43	5.7	43	77	6	234	28	31	19	20	1.97
13171248--13171288	21	2.0	21	90	4	66	2	46	17	34	1.61
13184143--13184444	42	7.3	41	88	2	381	33	26	25	14	1.94
13185458--13185521	30	2.2	29	83	8	76	57	3	0	39	1.14
13185482--13186337	427	2.0	428	99	0	1705	43	8	12	35	1.74
13187780--13187846	27	2.5	26	79	9	73	55	8	1	34	1.40
13199947--13200032	30	2.8	32	89	7	140	47	11	9	31	1.71
13203055--13203099	20	2.3	19	84	3	54	62	20	0	17	1.33
13203221--13203263	20	2.2	20	83	4	52	39	4	9	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13203964--13204022	30	1.9	30	83	10	75	32	8	0	59	1.28
13203955--13204021	14	4.5	15	71	20	52	34	7	0	58	1.26
13217635--13217899	27	9.8	27	79	4	212	24	25	8	41	1.83
13221911--13221966	27	2.2	25	83	6	67	10	32	1	55	1.45
13224558--13224587	9	3.3	9	90	0	51	76	10	0	13	1.01
13227606--13227635	15	2.0	15	93	0	51	23	16	26	33	1.96
13228168--13228233	33	2.0	33	90	0	105	28	12	25	33	1.92
13232994--13233027	11	3.1	11	91	0	59	73	0	17	8	1.08
13244237--13244270	16	2.1	16	88	0	50	61	17	8	11	1.54
13250041--13250206	51	3.3	50	83	4	190	31	27	15	26	1.95
13257223--13257270	17	2.7	18	83	6	62	22	4	0	72	1.01
13257335--13257368	17	2.1	16	89	10	52	26	5	8	58	1.51
13263882--13264046	35	4.7	35	77	5	131	35	36	5	22	1.77
13263871--13264046	69	2.6	67	73	8	174	35	35	5	24	1.78
13267144--13267187	23	1.9	23	85	0	61	47	0	9	43	1.35
13268814--13268853	19	2.1	19	95	0	71	32	15	25	27	1.95
13277357--13277468	43	2.6	43	92	0	179	33	19	4	41	1.72
13292237--13292501	29	9.1	29	81	0	251	26	17	20	35	1.95
13292237--13292501	58	4.6	58	81	1	280	26	17	20	35	1.95
13292237--13292511	87	3.2	85	81	5	282	26	17	20	35	1.95
13295648--13295673	5	5.2	5	100	0	52	61	19	0	19	1.35
13297936--13297988	16	3.4	15	78	14	54	75	7	5	11	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13304942--13304971	15	2.0	15	100	0	60	40	26	13	20	1.89
13308971--13309004	9	3.8	9	84	0	50	47	14	8	29	1.75
13309686--13309711	5	5.2	5	100	0	52	23	19	19	38	1.93
13323903--13323952	26	1.9	26	84	8	66	56	0	0	44	0.99
13323906--13323946	18	2.2	19	91	4	66	53	0	0	46	1.00
13340546--13340619	37	2.0	37	97	0	139	41	8	22	27	1.82
13342562--13342618	30	1.9	29	89	3	87	31	33	22	12	1.91
13351643--13351673	12	2.6	12	94	0	53	25	3	0	70	1.02
13351900--13351943	22	2.0	22	100	0	88	18	4	40	36	1.71
13356671--13356701	9	3.4	9	100	0	62	41	9	12	35	1.76
13367663--13367707	17	2.8	16	83	13	56	31	2	0	66	1.04
13367672--13367710	15	2.6	16	84	8	55	35	0	0	64	0.94
13386250--13386289	21	1.9	21	94	0	71	2	7	10	80	1.00
13402001--13402153	56	2.7	56	84	2	209	45	18	4	30	1.70
13405640--13405796	56	2.8	56	91	2	253	43	16	8	30	1.78
13412893--13413028	29	4.6	29	72	11	89	40	18	13	27	1.89
13416493--13416548	24	2.3	24	84	9	69	19	25	10	44	1.83
13416501--13416548	24	2.0	25	87	4	71	18	22	10	47	1.79
13420650--13420984	87	3.8	86	80	2	382	22	25	13	38	1.91
13420650--13420962	29	10.8	29	80	4	335	21	25	14	38	1.91
13422360--13422511	73	2.1	74	91	1	243	40	10	26	21	1.86
13425061--13425242	97	1.9	97	94	0	319	32	24	10	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13430982--13431029	21	2.3	20	82	6	60	6	4	20	68	1.28
13430988--13431029	21	2.0	21	90	0	66	4	2	21	71	1.16
13438538--13438915	126	3.0	126	95	0	666	37	16	17	29	1.91
13450985--13451055	35	2.0	35	94	0	124	32	29	7	30	1.84
13451347--13451374	9	3.1	9	100	0	56	21	10	10	57	1.63
13453793--13453853	20	3.1	20	73	2	61	24	19	27	27	1.99
13454663--13454723	30	2.0	30	90	0	95	45	4	18	31	1.70
13456140--13456190	26	2.0	26	88	0	75	27	17	19	35	1.94
13456251--13456308	29	2.0	29	89	0	89	24	13	22	39	1.90
13458392--13458449	25	2.3	26	78	3	64	39	12	13	34	1.82
13479340--13479418	30	2.5	31	84	10	99	44	10	18	26	1.82
13479347--13479404	31	1.9	30	89	3	89	46	12	18	22	1.82
13480095--13480120	12	2.2	12	100	0	52	7	15	30	46	1.74
13487092--13487419	43	7.6	43	96	0	559	28	26	20	25	1.99
13489681--13489733	26	2.0	26	85	0	70	41	26	18	13	1.87
13500221--13500285	31	2.1	31	91	0	103	41	13	12	32	1.82
13502270--13502316	20	2.3	20	82	10	60	70	8	4	17	1.29
13502300--13502385	30	3.0	28	79	17	97	55	4	0	39	1.20
13504051--13504122	30	2.4	30	85	0	99	29	25	12	33	1.92
13504153--13504261	49	2.2	49	82	11	125	9	55	2	33	1.46
13505914--13506113	110	1.8	111	90	1	321	32	23	14	30	1.94
13507263--13507366	8	14.0	7	73	23	56	73	0	4	22	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13507261--13507353	20	4.8	19	77	22	88	73	0	4	22	1.01
13507278--13507364	5	16.4	5	73	17	61	74	0	4	20	0.99
13507261--13507363	54	1.9	53	88	5	154	73	0	4	21	1.01
13507271--13507363	16	5.4	17	75	20	86	74	0	4	21	0.99
13507261--13507366	16	6.3	16	72	20	67	73	0	4	21	1.01
13511089--13511117	10	2.9	10	100	0	58	72	0	10	17	1.11
13512157--13512213	30	1.9	30	88	0	87	31	12	22	33	1.91
13512901--13512936	2	18.0	2	100	0	72	50	0	0	50	1.00
13513975--13514007	14	2.3	15	89	5	50	33	0	0	66	0.92
13522548--13523247	375	1.9	375	90	0	1114	26	12	22	39	1.89
13539312--13539359	25	1.9	25	100	0	96	31	27	20	20	1.98
13539308--13539380	25	2.9	25	80	8	85	31	21	23	23	1.98
13539348--13539396	25	2.0	25	87	0	71	30	12	26	30	1.92
13541131--13541176	23	2.0	23	95	0	83	45	0	28	26	1.54
13556290--13556448	51	3.1	51	81	5	203	38	26	3	32	1.72
13562066--13562101	18	2.0	18	89	10	56	61	0	11	27	1.30
13566817--13567006	61	3.1	61	84	0	245	27	24	15	32	1.95
13571272--13571317	16	2.9	16	78	15	51	54	0	4	41	1.20
13573704--13573789	35	2.4	34	79	11	102	40	18	26	13	1.88
13579743--13579866	63	2.0	63	93	0	212	48	23	8	19	1.77
13580732--13580855	43	2.9	43	82	1	149	29	20	25	25	1.99
13581499--13581549	26	2.0	26	100	0	102	37	19	7	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13585817--13585902	27	3.1	27	86	6	136	51	6	2	39	1.42
13585852--13585897	15	3.1	15	70	17	51	60	4	0	34	1.16
13588266--13588299	5	6.8	5	93	0	59	41	17	0	41	1.50
13588801--13588825	2	12.5	2	100	0	50	48	0	0	52	1.00
13591569--13591608	14	2.9	14	84	0	53	32	7	17	42	1.77
13591592--13591631	20	2.0	20	90	0	62	27	10	12	50	1.72
13594000--13594048	25	2.0	24	84	15	64	44	8	8	38	1.64
13597551--13597604	29	2.0	28	82	13	69	46	0	3	50	1.19
13597609--13597895	142	2.0	143	99	0	567	32	12	9	45	1.73
13599784--13599837	3	17.7	3	84	3	72	35	3	0	61	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128