genome.fa.s12.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  37  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11431352--11431506	44	3.5	44	67	4	116	25	23	25	25	2.00
11431796--11432023	44	5.2	43	78	8	187	28	16	24	30	1.97
11431814--11432005	42	4.4	42	79	7	179	30	15	27	27	1.96
11434259--11434311	19	2.9	17	81	13	61	64	1	3	30	1.22
11445703--11445772	6	10.5	6	73	19	50	77	5	1	15	1.03
11447424--11447465	20	2.1	20	86	8	59	73	2	0	23	0.94
11447418--11447472	27	2.0	27	86	6	76	72	3	0	23	1.00
11465163--11465537	184	2.0	184	95	0	678	35	10	20	33	1.87
11465988--11466022	17	2.1	17	89	5	54	54	0	5	40	1.24
11468900--11468935	17	2.1	17	100	0	72	36	22	11	30	1.89
11471800--11471845	20	2.3	20	84	0	56	15	17	6	60	1.55
11475618--11475655	19	2.0	20	89	5	60	44	2	21	31	1.66
11483873--11483901	14	2.0	15	93	6	51	62	6	17	13	1.52
11485219--11485261	22	1.9	22	95	4	77	46	0	0	53	1.00
11485222--11485278	22	2.5	22	85	2	69	49	0	3	47	1.18
11502048--11502102	27	2.0	27	100	0	110	25	9	14	50	1.72
11506719--11506774	27	2.1	27	100	0	112	25	3	33	37	1.73
11516632--11516736	38	2.8	38	86	2	131	34	20	13	31	1.91
11518317--11518575	45	5.8	45	89	0	374	24	20	17	37	1.94
11518562--11518590	15	1.9	15	100	0	58	13	20	20	44	1.85
11518517--11518635	60	2.0	60	91	0	193	23	21	16	38	1.93
11518476--11518680	105	2.0	105	95	0	365	24	21	16	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11518577--11518723	45	3.3	45	89	3	233	27	20	14	37	1.92
11518429--11518723	150	2.0	150	89	1	448	25	20	16	37	1.93
11518578--11518768	90	2.1	90	83	1	231	26	20	15	38	1.92
11518382--11518768	195	2.0	195	84	2	499	25	19	16	37	1.92
11519349--11519385	16	2.2	17	81	18	51	29	18	2	48	1.62
11520390--11520427	14	2.6	15	80	19	53	52	13	0	34	1.40
11521953--11522151	54	3.7	54	76	7	181	44	19	16	19	1.87
11521953--11522108	53	2.9	54	80	5	172	46	18	16	17	1.84
11521953--11522149	27	7.3	27	78	5	159	44	19	16	19	1.87
11535713--11535746	1	34.0	1	100	0	68	0	0	0	100	0.00
11538646--11538727	40	2.0	41	95	2	148	23	20	12	43	1.85
11538998--11539038	20	2.0	20	86	9	57	73	2	0	24	0.96
11539346--11539385	21	2.0	20	85	14	55	62	2	5	30	1.29
11539925--11539959	17	2.0	18	88	5	54	22	5	2	68	1.24
11540325--11540350	11	2.4	11	100	0	52	61	0	0	38	0.96
11540780--11540816	18	2.0	20	84	10	51	35	5	0	59	1.20
11541235--11541359	34	3.7	34	78	10	130	36	0	16	46	1.48
11541446--11541967	251	2.1	251	87	2	744	38	17	16	28	1.91
11541445--11541967	126	4.2	126	88	1	721	38	17	16	28	1.91
11546086--11546256	72	2.4	72	86	4	249	54	14	5	25	1.62
11546681--11546746	18	3.7	18	93	0	114	37	13	13	34	1.84
11557692--11557897	51	4.1	51	79	8	231	29	14	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11561764--11561893	61	2.2	60	83	9	151	53	6	3	36	1.46
11564378--11564402	10	2.5	10	100	0	50	24	12	0	64	1.27
11566490--11566580	27	3.4	27	89	0	110	17	16	21	43	1.87
11566797--11566837	10	4.3	10	78	9	50	17	43	21	17	1.87
11571482--11571519	18	2.1	19	85	5	51	26	5	10	57	1.53
11612270--11612343	25	3.0	25	84	4	78	27	25	18	28	1.98
11612307--11612356	25	2.1	24	85	7	66	30	22	22	26	1.99
11618947--11618999	24	2.2	24	86	0	70	28	28	20	22	1.99
11618947--11619011	24	2.7	23	72	9	58	29	29	21	20	1.98
11622834--11623000	30	5.6	30	78	6	88	39	13	26	20	1.89
11622862--11622996	30	4.5	31	78	10	122	40	12	26	20	1.88
11622862--11623092	100	2.5	89	76	16	232	39	12	26	21	1.89
11622900--11623097	100	2.0	99	88	1	297	37	13	26	21	1.91
11623051--11623117	30	2.2	30	81	0	80	35	10	25	28	1.89
11649934--11650033	29	3.4	29	84	4	119	24	28	10	38	1.87
11649895--11650033	30	4.7	29	80	7	136	23	26	12	37	1.90
11655194--11655527	51	6.6	50	78	5	294	30	26	14	28	1.95
11655184--11655527	102	3.4	102	85	2	444	30	26	14	28	1.95
11658555--11658671	42	2.7	43	81	9	112	31	25	12	29	1.93
11658600--11658700	47	2.1	47	81	3	114	31	25	14	27	1.95
11658774--11658800	12	2.2	12	100	0	54	51	22	0	25	1.48
11665645--11665692	14	3.4	14	71	5	51	60	22	6	10	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11665642--11665714	29	2.4	30	93	4	121	61	21	5	10	1.49
11665652--11665709	16	3.8	16	71	13	59	60	24	6	8	1.51
11665811--11665862	24	2.2	24	89	0	77	53	7	3	34	1.48
11679262--11679456	50	3.9	50	80	2	212	21	29	22	27	1.99
11687426--11687459	18	1.9	17	88	5	50	23	11	11	52	1.70
11690136--11690161	5	5.2	5	100	0	52	42	19	19	19	1.90
11690702--11690761	30	2.0	31	86	3	86	41	1	36	20	1.62
11690976--11691012	9	4.1	9	85	0	56	29	8	13	48	1.71
11692829--11692858	14	2.1	15	93	6	53	20	6	13	60	1.55
11697186--11697253	32	2.1	32	100	0	136	33	19	8	38	1.82
11710100--11710139	21	1.9	21	89	0	62	15	27	2	55	1.53
11711392--11711426	11	3.2	11	88	11	54	28	0	0	71	0.86
11717157--11717755	27	22.1	27	83	1	633	42	20	17	19	1.90
11720571--11720607	19	1.9	19	89	10	58	35	24	0	40	1.55
11736920--11736952	16	2.0	17	88	5	50	27	3	18	51	1.60
11746744--11747068	162	2.0	163	99	0	643	32	15	23	28	1.95
11753932--11753966	15	2.3	15	100	0	70	20	31	25	22	1.98
11754203--11754242	16	2.5	16	83	0	53	82	2	7	7	0.92
11758782--11758883	39	2.6	39	93	0	168	20	23	34	21	1.97
11760110--11760159	25	2.0	25	100	0	100	20	16	12	52	1.75
11760457--11760586	65	2.0	65	100	0	260	32	7	27	32	1.85
11762369--11762558	45	4.2	45	86	2	274	35	17	20	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11768904--11768952	24	1.9	27	88	12	77	53	10	0	36	1.35
11772348--11772631	41	6.9	41	83	3	338	20	18	29	31	1.96
11772348--11772631	83	3.5	81	83	4	345	20	18	29	31	1.96
11772991--11773034	14	3.1	14	83	3	52	22	0	36	40	1.54
11772980--11773028	14	3.4	14	80	5	62	22	0	38	38	1.54
11772975--11773055	21	3.8	21	73	11	67	22	0	38	39	1.54
11773489--11773554	7	9.3	7	75	8	62	19	0	36	43	1.51
11773489--11773535	21	2.2	21	92	0	76	21	0	34	44	1.52
11773656--11773700	7	6.4	7	89	0	54	17	17	37	26	1.93
11781185--11781267	22	3.7	22	69	12	78	26	8	10	54	1.64
11781269--11781478	105	2.0	105	96	0	384	26	17	12	43	1.85
11782949--11783008	31	2.0	31	96	3	113	46	13	3	36	1.60
11782801--11783285	264	1.8	267	93	2	852	36	9	5	48	1.59
11783213--11783362	30	4.8	30	72	14	108	44	13	4	38	1.62
11783296--11783369	30	2.5	30	88	0	112	41	12	5	40	1.65
11783619--11783658	21	1.9	21	89	0	62	35	25	37	2	1.69
11784052--11784167	58	2.0	57	88	1	169	25	18	30	25	1.98
11784109--11784254	43	3.4	43	88	1	222	29	17	29	23	1.97
11786042--11786211	43	3.9	43	75	11	141	32	24	15	27	1.95
11788377--11788515	40	3.5	41	78	3	140	36	23	21	18	1.95
11788553--11788742	41	4.6	41	88	6	251	21	21	26	31	1.98
11793002--11793092	43	2.1	43	87	2	130	34	12	9	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11793358--11793670	43	7.3	42	80	6	283	23	17	30	28	1.97
11793417--11793670	86	3.0	86	90	3	379	24	17	30	27	1.97
11795772--11795804	16	2.1	16	94	0	57	36	6	33	24	1.80
11796037--11796071	18	2.0	17	88	5	52	54	0	0	45	0.99
11801129--11801233	40	2.6	40	75	8	106	33	6	4	55	1.47
11802950--11802994	18	2.4	18	92	3	72	15	4	4	75	1.12
11803316--11803342	13	2.1	13	100	0	54	77	0	0	22	0.76
11803353--11803444	7	12.9	7	77	8	51	39	40	0	20	1.53
11803366--11803460	49	1.9	49	81	8	113	38	41	0	20	1.52
11803434--11803466	14	2.3	15	89	5	50	45	39	0	15	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128