genome.fa.s12.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  52  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16557590--16557617	12	2.3	12	100	0	56	14	7	17	60	1.55
16567739--16567775	18	2.1	18	94	0	65	24	40	8	27	1.83
16568122--16568293	43	4.0	43	100	0	344	23	23	6	46	1.76
16568738--16568776	20	2.0	20	94	0	69	48	5	7	38	1.54
16570362--16570406	14	3.1	15	84	12	58	37	0	31	31	1.58
16570704--16570743	21	1.9	21	90	10	64	57	17	0	25	1.40
16570773--16570954	90	2.0	91	98	1	357	39	3	8	48	1.51
16571518--16571709	54	3.6	54	80	8	189	28	17	23	30	1.97
16574497--16574592	32	3.0	32	75	13	106	53	4	5	37	1.43
16574532--16574622	18	5.2	17	73	16	71	57	3	4	35	1.35
16574497--16574634	69	2.1	64	85	9	179	55	4	4	36	1.40
16574765--16574881	38	3.1	38	81	7	114	18	23	29	27	1.98
16580545--16580845	90	3.4	90	83	5	394	49	13	8	28	1.71
16584864--16585085	85	2.6	84	85	8	306	31	21	20	25	1.98
16584866--16585070	43	4.9	41	87	3	284	30	22	21	25	1.99
16584868--16585090	42	5.3	41	85	7	261	31	21	21	25	1.98
16584868--16585140	85	3.2	85	83	7	238	32	22	19	25	1.98
16590501--16590932	139	3.1	139	93	1	720	25	15	11	47	1.79
16590887--16591040	85	1.8	83	84	5	211	27	14	14	42	1.85
16591670--16591755	15	5.9	15	72	15	54	34	44	0	20	1.52
16592000--16592179	73	2.5	73	85	1	254	24	25	23	26	2.00
16592079--16592447	114	3.2	114	90	2	589	26	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16594246--16594499	127	2.0	124	85	8	336	46	8	1	43	1.43
16599620--16599650	9	3.6	9	91	8	55	22	0	0	77	0.77
16599846--16599875	4	7.5	4	92	0	51	3	0	20	76	0.92
16599842--16599875	12	2.8	12	90	0	59	5	0	17	76	0.98
16605169--16606198	515	2.0	515	93	0	1756	38	11	29	19	1.88
16609274--16609457	44	4.2	44	65	8	113	29	19	25	25	1.98
16609228--16609551	132	2.5	132	89	1	472	29	21	25	24	1.99
16612441--16612524	36	2.3	35	78	8	87	44	27	11	16	1.83
16620985--16621102	33	3.3	33	66	27	89	48	6	2	42	1.43
16620970--16621127	75	2.1	76	97	2	302	48	6	2	42	1.42
16622962--16622999	19	2.0	19	85	10	51	39	23	5	31	1.77
16624702--16624772	33	2.2	33	87	5	99	25	11	38	25	1.89
16629570--16629598	14	2.1	14	100	0	58	20	6	31	41	1.79
16633286--16633323	18	2.1	18	90	0	58	18	50	0	31	1.47
16637066--16637135	23	3.0	23	80	2	86	42	15	11	30	1.82
16640387--16640428	18	2.3	18	80	8	50	35	11	11	40	1.79
16647348--16647401	28	1.9	28	100	0	108	33	11	11	44	1.75
16649611--16649664	28	1.9	28	100	0	108	33	11	11	44	1.75
16651569--16651602	16	2.1	16	89	10	52	35	2	11	50	1.54
16654739--16654764	7	3.7	7	100	0	52	61	0	23	15	1.33
16654738--16654771	14	2.4	14	85	0	50	61	5	17	14	1.52
16668022--16668073	25	2.1	25	82	7	61	46	19	7	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16669210--16669253	20	2.2	20	84	8	54	31	6	9	52	1.59
16671154--16671261	54	2.0	54	96	0	198	36	7	12	44	1.70
16676102--16676137	11	3.3	11	96	0	63	16	13	25	44	1.85
16680488--16680538	19	2.6	19	82	17	61	37	0	5	56	1.23
16689554--16689650	49	2.0	49	93	0	167	24	25	6	43	1.77
16690975--16691039	16	4.4	16	67	25	52	20	26	3	50	1.62
16690959--16691044	43	2.0	43	95	0	154	23	24	2	50	1.61
16691718--16691758	19	2.2	18	86	4	55	34	17	0	48	1.47
16692268--16692293	13	2.0	13	100	0	52	53	0	0	46	1.00
16693014--16693053	14	2.7	15	80	7	55	45	0	0	55	0.99
16693243--16693379	58	2.3	59	80	6	145	44	16	13	24	1.85
16701781--16701844	28	2.3	28	80	20	73	45	1	3	50	1.27
16701832--16701899	26	2.7	24	76	13	64	41	1	0	57	1.08
16708097--16708218	34	3.6	34	79	6	106	40	19	15	24	1.91
16711719--16711770	20	2.6	21	81	6	63	59	0	0	40	0.97
16718012--16718040	14	2.1	14	100	0	58	55	13	0	31	1.39
16723406--16723449	17	2.7	16	77	19	54	15	9	0	75	1.05
16723963--16724027	29	2.2	29	88	0	94	44	12	23	20	1.84
16727829--16727884	9	6.0	9	76	13	51	64	0	1	33	1.04
16727829--16727891	20	3.4	17	78	20	63	63	0	1	34	1.04
16727829--16727892	18	3.4	18	78	16	67	64	0	1	34	1.03
16727828--16727910	39	2.2	38	79	14	91	65	1	2	31	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16728450--16728510	29	2.0	32	81	9	74	34	1	1	62	1.15
16728551--16728650	9	10.6	9	74	17	71	31	4	2	63	1.24
16728606--16728664	11	5.5	11	82	8	77	25	5	0	69	1.09
16728602--16728664	31	2.0	31	93	6	110	28	4	0	66	1.12
16728606--16728667	20	3.0	20	88	4	88	25	6	0	67	1.14
16729466--16729509	17	2.7	16	77	19	54	15	9	0	75	1.05
16730521--16730585	20	3.1	21	70	14	62	20	1	16	61	1.42
16731763--16731789	14	1.9	14	100	0	54	25	29	14	29	1.95
16733961--16734019	29	2.1	29	87	9	86	40	8	0	50	1.33
16736109--16736138	12	2.5	12	94	0	51	43	0	56	0	0.99
16741106--16741246	40	3.6	39	89	6	198	11	2	20	65	1.34
16750615--16751347	114	6.6	114	78	5	742	31	16	23	28	1.96
16750657--16751347	228	3.1	225	91	3	1078	31	15	23	28	1.96
16751079--16751272	102	1.9	102	80	2	228	30	15	24	28	1.96
16750957--16751347	216	1.8	216	99	0	773	31	15	24	28	1.96
16751651--16751695	14	3.2	14	81	6	56	6	0	48	44	1.29
16762364--16762433	21	3.3	20	86	4	68	40	20	35	4	1.72
16762419--16762454	12	3.0	12	91	0	54	44	16	36	2	1.63
16762871--16762964	42	2.2	43	83	7	111	28	20	21	29	1.98
16762910--16763192	85	3.3	84	86	3	361	24	21	21	32	1.98
16762910--16763192	42	6.6	42	85	5	347	24	21	21	32	1.98
16764420--16764477	25	2.3	25	78	0	62	22	1	12	63	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16766411--16766448	17	2.3	17	86	4	51	26	0	42	31	1.56
16767458--16767497	20	2.0	20	90	0	62	27	10	12	50	1.72
16767443--16767509	34	1.9	35	90	3	109	31	8	13	46	1.74
16767437--16767513	14	5.0	15	71	20	52	33	9	14	42	1.77
16779181--16779358	87	2.0	87	97	0	338	21	23	24	31	1.98
16790805--16790932	43	3.0	43	75	13	136	31	29	17	21	1.96
16791815--16791864	25	2.0	25	88	7	75	50	6	0	44	1.26
16792624--16792890	131	2.0	132	97	2	511	44	5	20	28	1.75
16792999--16793067	4	16.0	4	77	19	52	73	4	21	0	1.00
16792999--16793066	24	2.8	25	86	4	95	75	4	20	0	0.98
16793001--16793075	13	5.5	14	71	27	63	72	4	24	0	1.02
16793569--16793618	25	2.0	25	88	7	75	50	6	0	44	1.26
16794622--16794690	4	16.0	4	77	19	52	73	4	21	0	1.00
16794622--16794689	24	2.8	25	86	4	95	75	4	20	0	0.98
16794624--16794698	13	5.5	14	71	27	63	72	4	24	0	1.02
16796531--16796563	16	2.0	17	88	5	50	51	12	3	33	1.54
16796662--16796714	18	2.8	19	83	13	74	24	3	5	66	1.31
16796651--16796714	10	6.6	10	75	12	62	25	3	6	65	1.31
16796720--16796773	18	2.9	19	83	10	67	38	0	9	51	1.34
16804033--16804096	24	2.7	24	85	9	94	48	4	25	21	1.69
16804200--16804324	42	3.0	43	78	4	130	21	21	16	40	1.91
16807300--16807418	43	2.8	43	87	2	168	26	34	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16808016--16808067	23	2.3	23	79	0	59	34	7	30	26	1.85
16808768--16808878	40	2.8	38	77	8	114	19	16	19	44	1.87
16808782--16808878	40	2.4	39	83	5	122	20	15	21	42	1.89
16815600--16815636	12	3.1	13	92	7	53	70	13	0	16	1.17
16820551--16820584	15	2.3	15	94	0	59	32	8	0	58	1.29
16828253--16828291	19	2.0	20	90	5	62	53	5	5	35	1.45
16829618--16829671	18	3.0	18	71	10	56	42	0	11	46	1.39
16833029--16833224	61	3.1	60	79	16	211	41	2	5	51	1.38
16833203--16833590	193	2.0	194	99	0	769	37	12	10	39	1.78
16837348--16837385	17	2.2	17	95	0	67	26	15	15	42	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128