genome.fa.s12.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  57  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17946789--17946813	10	2.5	10	100	0	50	52	12	0	36	1.39
17949524--17949551	13	2.2	13	100	0	56	21	17	14	46	1.84
17955899--17955952	28	2.0	28	85	3	74	44	12	7	35	1.71
17956884--17957239	177	2.0	177	96	0	658	19	34	20	24	1.96
17957290--17958694	469	3.0	469	91	1	2314	38	26	11	23	1.89
17964207--17964255	25	2.0	25	84	8	64	30	18	14	36	1.90
17964221--17964269	25	2.0	25	88	8	73	32	18	14	34	1.91
17965494--17965554	31	2.0	31	86	0	86	16	34	24	24	1.95
17967850--17967902	26	2.0	27	85	3	72	32	24	18	24	1.97
17969197--17969232	18	2.0	18	94	0	63	38	25	5	30	1.78
17972167--17972218	27	1.9	27	96	0	95	25	15	7	51	1.69
17972841--17972904	25	2.6	25	69	14	60	34	23	14	28	1.93
17973139--17973206	24	2.8	24	76	8	68	25	23	17	33	1.96
17978147--17978294	45	3.2	45	64	23	115	31	30	8	30	1.86
17978127--17978320	96	2.0	96	98	0	379	34	29	6	29	1.83
17984047--17984107	30	2.0	31	84	9	81	47	3	0	49	1.18
17984118--17984202	42	2.0	42	84	2	109	42	9	4	43	1.58
17998217--17998283	29	2.3	29	80	10	75	46	16	14	22	1.84
18002917--18002968	13	3.7	13	74	18	50	15	30	36	17	1.91
18002911--18002979	30	2.3	30	97	0	129	18	34	30	15	1.93
18002930--18002979	17	3.2	17	72	21	63	20	34	30	16	1.94
18004238--18004397	79	2.0	79	96	0	293	35	20	7	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18004246--18004370	39	3.2	39	67	18	114	37	19	8	34	1.83
18004892--18004951	21	2.9	21	92	0	102	48	18	21	11	1.80
18007096--18007125	2	15.0	2	100	0	60	50	0	0	50	1.00
18007760--18007807	22	2.2	22	85	7	62	56	10	4	29	1.52
18012013--18012084	31	2.4	31	95	2	128	59	15	20	4	1.52
18012341--18012652	23	13.7	23	73	6	186	40	25	3	30	1.73
18012335--18012656	46	7.1	46	75	5	235	40	26	4	29	1.75
18012337--18012694	182	2.0	182	94	1	637	40	25	4	29	1.75
18013197--18013227	15	2.1	15	93	0	53	51	19	3	25	1.62
18017814--18017849	16	2.3	16	90	4	56	77	0	5	16	0.94
18018486--18019024	45	12.1	45	81	5	601	28	22	17	31	1.97
18018486--18019024	132	4.0	135	80	4	563	28	22	17	31	1.97
18018486--18019099	90	6.9	91	80	6	604	28	22	18	30	1.97
18018486--18019099	223	2.8	222	80	5	724	28	22	18	30	1.97
18020133--18020188	26	2.1	27	90	3	87	62	12	10	14	1.55
18024333--18024367	16	2.2	16	89	0	52	45	20	14	20	1.85
18025757--18025805	21	2.2	21	82	7	62	44	4	10	40	1.57
18041415--18041445	2	15.5	2	100	0	62	48	0	0	51	1.00
18041811--18042114	4	76.0	4	94	0	482	48	25	2	23	1.63
18042136--18042184	12	4.1	12	91	0	71	46	30	4	18	1.67
18042124--18042178	14	3.9	14	73	0	56	47	34	3	14	1.62
18043297--18043373	29	2.5	31	87	4	104	25	14	12	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18044475--18044551	29	2.6	29	83	4	91	46	14	14	24	1.81
18046897--18046930	6	5.7	6	100	0	68	17	0	32	50	1.47
18052284--18052315	15	2.2	15	94	5	57	65	0	3	31	1.08
18067729--18067757	12	2.3	13	94	5	51	65	6	6	20	1.40
18070266--18070342	20	3.8	20	86	6	102	23	27	0	49	1.50
18078301--18078373	37	1.9	37	84	13	96	42	1	23	32	1.63
18083833--18083883	23	2.2	23	89	0	75	27	7	21	43	1.80
18086655--18086735	26	3.2	26	62	28	64	22	14	29	33	1.94
18086742--18086831	45	2.0	45	95	0	162	26	15	23	34	1.95
18090141--18090184	23	1.9	23	95	0	79	25	20	31	22	1.98
18092312--18093091	389	2.0	390	99	0	1553	26	16	19	37	1.93
18099474--18099693	31	7.1	31	90	0	332	22	11	28	37	1.89
18099483--18099693	62	3.4	62	97	0	386	23	11	27	36	1.89
18103585--18103774	42	4.5	42	74	9	163	30	23	19	26	1.98
18104158--18104209	21	2.5	21	84	9	70	7	46	13	32	1.72
18106987--18107035	23	2.1	23	84	3	62	28	18	6	46	1.72
18108330--18108357	14	2.0	14	100	0	56	21	0	50	28	1.49
18108524--18108827	148	2.1	148	87	1	430	38	20	15	25	1.92
18108571--18108871	148	2.0	146	82	5	356	39	21	14	24	1.91
18109088--18109120	16	2.1	16	88	5	50	33	0	6	60	1.21
18109151--18109211	24	2.8	21	77	18	61	45	31	3	19	1.66
18109253--18109312	28	2.1	28	84	6	77	48	31	3	16	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18109457--18109513	20	2.8	20	81	7	71	47	36	0	15	1.46
18109674--18109747	21	3.7	21	77	14	93	37	44	2	14	1.60
18109669--18109747	38	2.1	37	92	2	131	39	41	2	16	1.62
18109714--18109774	21	2.9	21	79	16	63	40	39	1	18	1.60
18110003--18110172	72	2.3	73	81	5	202	28	24	20	26	1.99
18110081--18110375	113	2.6	113	89	0	448	27	27	20	25	1.99
18110311--18110537	73	3.1	72	82	4	267	25	23	22	28	1.99
18113999--18114042	23	1.9	23	85	0	61	43	22	9	25	1.82
18113999--18114048	23	2.2	23	81	0	55	44	20	10	26	1.82
18124125--18124158	14	2.4	14	90	0	50	52	0	23	23	1.47
18124937--18124972	17	2.2	16	90	5	54	66	0	25	8	1.19
18138022--18138097	34	2.2	34	92	0	125	32	3	14	48	1.62
18143317--18143360	15	3.0	15	83	3	54	47	9	13	29	1.74
18148581--18148628	10	4.6	10	82	10	51	37	0	0	62	0.95
18169680--18169783	48	2.1	49	85	3	138	25	23	33	17	1.96
18169688--18169862	50	3.6	50	78	5	153	28	24	27	20	1.99
18170074--18170112	20	2.0	20	90	10	62	56	5	23	15	1.59
18176440--18176487	25	1.9	25	86	0	69	75	8	2	14	1.13
18177637--18177672	18	1.9	18	88	5	54	58	2	0	38	1.13
18179002--18179030	3	9.7	3	100	0	58	0	34	0	65	0.93
18189183--18189281	45	2.2	44	78	7	103	38	32	4	25	1.75
18197837--18197876	21	2.0	20	90	5	62	12	20	25	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18198920--18198963	15	3.0	15	83	3	54	47	9	13	29	1.74
18205678--18205758	10	7.7	10	74	10	72	44	0	0	55	0.99
18205679--18205739	22	2.8	22	97	0	113	49	0	0	50	1.00
18205678--18205758	32	2.5	31	72	5	81	44	0	0	55	0.99
18215784--18215907	50	2.5	50	79	0	122	28	22	27	21	1.99
18215825--18215970	50	2.9	50	80	5	145	29	23	26	20	1.99
18216387--18216458	35	2.1	35	100	0	144	26	5	22	45	1.74
18234008--18234114	50	2.1	50	81	3	117	29	26	17	26	1.98
18234286--18234661	44	8.7	44	82	7	439	28	26	18	27	1.98
18234456--18234534	38	2.1	38	83	4	97	25	24	16	34	1.95
18234332--18234661	170	1.9	170	87	3	477	28	25	17	27	1.98
18234286--18234621	126	2.6	126	85	4	442	27	26	17	27	1.98
18234675--18235227	88	6.3	88	88	0	777	19	23	28	28	1.98
18234675--18235227	262	2.1	263	87	1	822	19	23	28	28	1.98
18236410--18236460	16	3.3	15	79	15	59	0	13	3	82	0.81
18242191--18242228	19	2.0	19	100	0	76	42	0	5	52	1.24
18242269--18242304	18	1.9	18	88	5	54	58	2	0	38	1.13
18243141--18243173	17	2.0	17	88	5	50	48	24	0	27	1.51
18243612--18243661	3	16.7	3	91	0	82	0	28	0	72	0.86
18244365--18244418	25	2.1	25	83	10	65	61	1	3	33	1.25
18247108--18247224	50	2.4	50	81	4	130	23	25	18	32	1.97
18247254--18247517	50	5.2	50	93	2	429	21	32	20	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18256616--18256706	45	2.0	45	80	4	103	36	34	3	26	1.73
18257002--18257046	19	2.4	18	85	3	54	57	2	8	31	1.41
18259138--18259193	18	3.3	16	80	14	51	69	3	16	10	1.30
18263354--18263400	22	2.1	22	84	7	60	40	29	4	25	1.75
18266260--18266297	3	12.7	3	100	0	76	31	0	0	68	0.90
18267311--18267452	32	4.5	32	79	4	153	40	20	19	19	1.91
18267609--18267657	24	2.0	24	84	0	62	42	22	10	24	1.84
18267615--18267692	26	3.0	26	78	9	81	35	20	19	24	1.95
18267678--18267874	54	3.7	53	80	3	189	25	21	18	34	1.96
18267678--18267898	81	2.7	81	80	3	232	25	20	19	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128