genome.fa.s12.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  79  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25919281--25919360	29	2.8	29	94	0	142	32	6	17	43	1.74
25919408--25919432	12	2.1	12	100	0	50	16	24	36	24	1.94
25920565--25920596	8	4.0	8	91	0	55	50	21	0	28	1.49
25920612--25920640	14	2.1	14	100	0	58	41	0	6	51	1.28
25928900--25928937	16	2.4	16	95	0	67	36	2	34	26	1.71
25928919--25929011	44	2.1	44	84	9	118	32	5	27	34	1.80
25929422--25929553	18	7.8	18	75	13	111	55	2	0	41	1.18
25929469--25929628	59	2.7	60	72	12	161	54	4	0	40	1.25
25929583--25929626	21	2.1	21	83	8	54	59	6	0	34	1.24
25931723--25931799	27	2.9	27	94	0	127	28	29	28	12	1.94
25931722--25931815	27	3.5	26	84	8	82	28	28	28	13	1.95
25931898--25931936	11	3.6	11	86	6	62	71	0	28	0	0.86
25931897--25931935	21	1.9	20	94	5	69	69	0	30	0	0.89
25932917--25932953	18	2.1	18	94	0	65	32	8	48	10	1.67
25938708--25938751	22	2.0	22	95	4	79	0	40	0	59	0.98
25938782--25938850	27	2.6	27	90	0	111	15	28	27	27	1.96
25938915--25938980	26	2.3	29	87	10	93	46	0	10	42	1.38
25943953--25944026	29	2.5	29	86	4	94	48	14	14	21	1.80
25965388--25965423	19	1.9	18	88	5	54	69	2	0	27	1.02
25965604--25965710	34	3.1	34	62	10	83	51	11	8	28	1.67
25965592--25965728	68	2.0	68	97	0	256	51	10	9	27	1.68
25967745--25967793	26	1.9	26	83	4	64	63	2	14	20	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25969392--25969425	17	2.1	16	88	5	50	52	5	17	23	1.66
25971518--25971574	24	2.4	24	82	5	71	17	33	15	33	1.92
25971537--25971619	24	3.4	25	77	12	75	19	28	19	32	1.96
25971665--25971749	26	3.4	25	80	6	91	15	25	23	35	1.94
25971680--25971818	25	5.7	24	77	5	91	16	25	24	33	1.96
25971779--25971826	24	2.0	24	87	0	69	18	20	25	35	1.95
25974283--25974409	33	4.0	33	77	5	129	40	12	24	22	1.89
25974329--25974416	28	3.0	28	74	14	79	39	11	25	23	1.88
25975774--25975815	16	2.5	17	80	7	50	23	7	2	66	1.28
25977977--25978064	41	2.2	40	81	4	104	57	4	4	32	1.39
25986032--25986065	16	2.2	16	89	5	52	26	0	14	58	1.36
25987165--25987246	43	1.9	43	85	5	112	18	23	28	30	1.97
25990973--25991084	21	5.3	21	72	0	98	14	20	17	47	1.82
25990957--25991105	42	3.5	42	86	0	208	16	20	18	44	1.86
25991044--25991126	21	4.0	21	76	7	73	16	22	19	40	1.91
25993175--25993203	12	2.3	13	94	5	51	44	6	0	48	1.29
25993566--25993836	133	2.0	134	97	1	519	45	13	8	31	1.74
25993956--25993986	10	2.9	11	90	9	55	0	9	0	90	0.46
25993955--25993988	16	2.1	16	88	0	50	0	14	0	85	0.60
25994305--25994360	18	3.2	17	85	12	69	3	16	0	80	0.85
25994311--25994353	14	3.3	13	81	9	52	2	16	0	81	0.79
25994311--25994365	13	4.2	13	80	17	53	1	18	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25994434--25994488	20	2.7	20	81	16	67	1	30	0	67	1.01
25996971--25997173	21	9.8	21	66	6	92	16	23	16	43	1.87
25996958--25997158	42	4.8	42	82	4	217	16	23	16	43	1.87
26001813--26001872	26	2.3	26	88	5	86	30	10	13	46	1.75
26008500--26008528	14	2.1	14	93	6	51	6	6	17	68	1.34
26010767--26010820	10	5.2	10	80	8	63	11	14	14	59	1.62
26010765--26010820	21	2.7	21	97	0	103	10	14	14	60	1.58
26010765--26010814	11	4.8	10	80	9	64	10	12	14	64	1.51
26015900--26015963	24	2.7	24	90	4	94	35	4	9	50	1.56
26020377--26020422	23	2.0	23	91	0	74	34	4	8	52	1.52
26020377--26020437	23	2.6	23	84	7	61	34	4	9	50	1.57
26027576--26027600	5	5.0	5	100	0	50	40	20	20	20	1.92
26028117--26028176	30	2.0	31	86	3	86	40	0	40	20	1.52
26032762--26032813	3	17.3	3	100	0	104	32	34	0	32	1.58
26036177--26036254	19	3.7	21	77	14	72	34	8	16	39	1.80
26039739--26039825	20	4.6	19	73	17	74	48	5	3	42	1.44
26044086--26044120	16	2.1	17	89	5	54	37	0	51	11	1.38
26058267--26058318	25	2.0	26	82	10	63	38	13	9	38	1.77
26060032--26060064	16	2.1	16	94	0	57	66	6	12	15	1.42
26063755--26063858	51	2.0	52	92	1	174	40	2	20	36	1.67
26072288--26072357	25	2.7	26	82	8	81	38	11	15	34	1.84
26083182--26083232	24	2.1	24	100	0	102	21	11	29	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26093964--26093988	10	2.5	10	100	0	50	28	0	0	72	0.86
26094304--26094357	17	3.4	17	65	19	53	20	38	29	11	1.87
26094292--26094409	30	3.9	30	85	0	146	22	37	27	11	1.90
26096286--26096314	7	4.1	7	100	0	58	41	0	44	13	1.44
26102261--26102286	3	8.7	3	100	0	52	69	0	0	30	0.89
26104394--26104445	26	2.0	26	100	0	104	26	11	3	57	1.51
26106819--26106843	13	1.9	13	100	0	50	56	8	0	36	1.29
26110434--26110467	17	2.0	17	100	0	68	23	23	29	23	1.99
26110441--26110507	29	2.3	30	84	2	82	19	29	28	22	1.98
26114488--26114693	104	2.0	104	95	0	367	26	26	18	27	1.98
26118880--26118913	17	1.9	17	88	5	50	50	8	8	32	1.64
26123482--26123515	15	2.2	16	89	5	52	70	0	11	17	1.16
26123481--26123519	20	2.0	20	85	10	53	69	0	12	17	1.19
26134014--26134082	27	2.5	28	79	9	70	63	4	2	28	1.28
26149079--26149240	80	2.0	81	98	1	317	30	7	8	53	1.59
26149701--26149728	3	9.3	3	100	0	56	32	0	0	67	0.91
26156287--26156317	16	1.9	16	93	0	53	9	51	32	6	1.60
26175522--26175561	16	2.5	16	91	0	62	47	0	10	42	1.37
26175494--26175546	22	2.4	22	87	0	70	52	0	3	43	1.19
26175550--26175692	68	2.1	67	93	2	252	41	4	9	44	1.57
26175634--26175661	9	3.1	9	100	0	56	32	0	10	57	1.33
26175755--26175798	24	1.9	24	90	9	74	61	2	0	36	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26177497--26177529	14	2.4	14	90	5	50	0	21	0	78	0.75
26194291--26194341	24	2.1	24	88	0	75	37	3	9	49	1.55
26198702--26198755	24	2.2	24	86	0	72	38	3	7	50	1.48
26200613--26200654	20	2.1	20	95	0	75	50	16	9	23	1.75
26200667--26200719	21	2.5	21	79	8	72	43	33	3	18	1.68
26200933--26200968	18	2.0	18	100	0	72	16	16	22	44	1.86
26203746--26203798	26	2.0	26	85	3	70	58	1	0	39	1.09
26203764--26203793	16	1.9	16	93	6	53	60	0	0	40	0.97
26218300--26218940	104	6.2	104	100	0	1282	21	19	29	29	1.98
26220605--26220773	25	6.8	25	75	6	137	17	26	20	35	1.95
26220597--26220762	50	3.3	49	78	12	153	18	28	20	33	1.96
26220597--26220773	74	2.4	75	78	8	191	18	27	20	34	1.95
26222063--26222236	17	9.8	17	76	10	145	45	11	12	31	1.77
26222080--26222247	18	9.6	17	74	14	112	44	11	11	32	1.76
26223031--26223083	28	2.0	26	85	7	70	1	26	0	71	0.96
26223816--26223949	30	4.5	30	74	12	96	47	5	16	31	1.69
26231901--26231949	24	2.0	24	84	7	64	32	4	24	38	1.74
26235189--26235363	58	3.0	58	99	0	341	25	11	15	47	1.79
26239623--26239685	28	2.2	28	86	10	85	23	4	6	65	1.36
26248372--26248406	16	2.3	15	90	5	52	74	0	2	22	0.95
26248621--26249093	241	2.0	239	87	4	684	29	20	14	35	1.92
26259856--26259912	24	2.4	24	77	13	64	22	1	1	73	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26259878--26259913	9	4.0	9	89	10	56	22	2	0	75	0.94
26259964--26260002	17	2.3	18	82	13	55	17	7	0	74	1.05
26261938--26261979	19	2.2	20	86	4	59	23	4	4	66	1.30
26276911--26277004	30	3.4	30	66	28	89	39	14	26	19	1.90
26278537--26279342	44	17.6	44	73	8	484	33	15	19	31	1.93
26278629--26279342	89	7.9	88	77	6	435	33	15	19	31	1.93
26279359--26279460	44	2.3	44	86	3	134	34	16	23	25	1.95
26279361--26279472	44	2.5	44	84	2	127	35	15	24	25	1.94
26280885--26280941	24	2.4	23	78	18	64	21	3	1	73	1.07
26280885--26280964	38	2.1	39	83	6	101	22	6	1	70	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128