genome.fa.s12.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  63  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20280624--20280658	17	2.1	17	89	5	54	0	14	40	45	1.45
20280652--20280699	18	2.7	18	86	0	69	12	6	39	41	1.68
20290209--20290386	89	2.0	89	96	2	331	30	28	14	25	1.95
20290661--20290714	4	13.0	4	81	14	65	70	1	3	24	1.13
20292844--20292898	22	2.6	21	85	2	65	36	7	10	45	1.67
20292881--20292932	22	2.3	22	83	3	68	44	0	7	48	1.31
20292858--20292927	14	4.9	14	71	13	52	38	4	10	47	1.57
20300525--20300699	60	2.9	60	79	5	192	23	11	12	52	1.71
20300525--20300632	30	3.6	30	73	10	94	25	11	10	52	1.68
20300525--20300702	59	2.9	61	77	8	193	23	11	13	51	1.73
20306053--20306086	10	3.3	10	91	4	50	52	5	0	41	1.25
20313514--20313587	9	8.3	9	77	19	84	78	10	0	10	0.97
20313513--20313573	8	6.4	10	78	21	69	80	9	0	9	0.91
20313515--20313587	17	4.2	17	80	19	96	78	10	0	10	0.98
20313515--20313582	19	3.8	19	92	7	108	79	10	0	10	0.94
20313517--20313595	19	4.7	15	89	9	77	75	11	1	11	1.10
20313602--20313640	7	5.6	7	90	9	62	87	0	12	0	0.55
20314484--20314516	8	4.1	8	85	14	50	75	0	12	12	1.04
20314484--20314516	16	2.1	16	94	5	59	75	0	12	12	1.04
20315729--20316654	46	20.1	46	89	1	1390	25	15	29	29	1.96
20316633--20317044	132	3.1	132	94	0	689	31	17	24	26	1.97
20316707--20317043	44	7.7	44	64	13	138	30	17	24	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20325878--20325911	9	4.0	8	88	11	50	23	5	0	70	1.09
20325878--20325911	4	8.0	4	87	12	50	23	5	0	70	1.09
20325878--20325910	13	2.5	13	100	0	66	24	6	0	69	1.10
20325971--20326009	17	2.2	18	86	13	55	30	5	2	61	1.31
20325971--20326058	3	30.3	3	68	19	53	29	3	4	62	1.31
20326079--20326361	140	2.0	141	99	0	559	25	16	7	50	1.70
20336539--20336579	21	2.0	21	85	9	57	31	2	4	60	1.30
20336569--20336607	20	1.9	21	84	5	53	28	2	7	61	1.37
20339926--20340299	44	8.3	44	78	5	311	32	15	21	29	1.94
20339994--20340273	95	3.0	95	78	5	268	35	15	20	29	1.93
20339971--20340221	139	1.8	139	91	1	414	33	15	21	29	1.94
20339924--20340273	183	1.9	183	83	1	459	32	15	22	29	1.95
20341950--20342040	3	31.3	3	71	18	68	30	2	5	61	1.31
20347629--20347707	33	2.4	33	82	0	86	35	40	3	20	1.70
20347873--20347905	14	2.3	15	94	5	59	36	33	0	30	1.58
20348109--20348167	26	2.3	26	90	0	100	42	0	3	54	1.17
20348119--20348167	15	3.5	15	71	21	52	40	0	4	55	1.19
20348549--20348913	41	8.9	41	89	1	498	28	29	24	17	1.97
20348919--20349052	40	3.4	39	76	5	119	21	20	20	37	1.95
20354664--20354840	31	5.7	31	85	0	230	44	16	10	28	1.80
20355770--20355800	9	3.4	9	90	0	53	25	12	22	38	1.90
20355853--20355889	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20360206--20360311	42	2.5	42	79	0	122	33	18	33	15	1.92
20364764--20364995	119	1.9	120	99	0	457	46	8	13	31	1.74
20364762--20365023	119	2.2	117	90	3	373	45	8	14	30	1.76
20370383--20370577	27	7.2	28	73	11	122	38	17	24	18	1.93
20370397--20370542	53	2.7	54	86	2	204	39	17	23	19	1.92
20370413--20370551	54	2.6	53	86	1	188	38	17	23	20	1.94
20378210--20378239	16	1.9	15	93	6	51	80	6	0	13	0.91
20386155--20386214	30	2.0	30	90	3	93	48	11	6	33	1.66
20387717--20387756	21	1.9	21	85	10	55	32	15	7	45	1.74
20392174--20392216	21	2.0	21	86	0	59	37	32	0	30	1.58
20392184--20392216	11	3.1	11	91	8	59	33	39	0	27	1.57
20402566--20402624	30	2.0	30	83	3	75	32	6	10	50	1.62
20406010--20406138	50	2.6	49	84	6	154	27	20	26	24	1.99
20406348--20406386	20	2.0	20	90	10	62	56	5	23	15	1.59
20421926--20422107	101	1.8	100	85	3	240	30	26	17	25	1.97
20433273--20433328	28	2.0	28	92	0	94	23	17	17	41	1.90
20437064--20437096	16	2.0	17	88	5	50	51	3	18	27	1.60
20437229--20437297	26	3.0	22	66	15	57	17	14	27	40	1.88
20441913--20441956	3	15.0	3	90	4	72	31	2	0	65	1.05
20446672--20446735	26	2.4	27	94	5	112	40	10	0	48	1.38
20447187--20447487	45	6.8	45	94	3	540	39	15	0	45	1.47
20447149--20447487	90	3.9	88	92	5	534	39	15	0	44	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20447466--20447514	15	3.1	15	85	8	62	42	14	0	42	1.45
20447521--20447687	40	4.0	45	81	12	205	43	1	14	40	1.54
20447618--20447690	38	1.9	38	97	0	137	42	4	9	43	1.56
20447619--20447679	19	3.3	18	66	8	50	45	3	8	42	1.50
20447633--20447692	19	3.2	18	66	15	50	41	5	10	43	1.60
20447958--20448033	27	2.8	27	89	0	107	17	27	23	31	1.97
20448071--20448134	27	2.4	27	97	0	119	46	0	10	42	1.39
20454439--20454468	12	2.5	12	94	0	51	6	30	40	23	1.80
20456756--20456800	22	2.0	22	83	8	56	42	4	0	53	1.21
20463536--20463684	42	3.5	43	79	11	155	28	19	25	26	1.99
20490234--20490271	2	19.0	2	100	0	76	0	0	50	50	1.00
20498811--20498956	48	3.0	48	100	0	292	36	6	20	36	1.78
20500532--20500635	54	1.9	54	86	0	145	26	29	26	16	1.97
20500808--20500847	20	1.9	21	85	10	55	22	22	22	32	1.98
20506642--20506755	57	2.0	57	89	3	176	28	21	6	44	1.75
20509285--20509317	4	8.2	4	93	0	57	45	0	0	54	0.99
20510307--20510343	18	2.0	19	89	5	58	40	8	21	29	1.82
20516050--20516093	20	2.2	20	84	12	54	56	0	0	43	0.99
20517477--20517501	13	1.9	13	100	0	50	24	8	0	68	1.16
20519075--20519136	27	2.3	27	76	15	65	54	19	8	17	1.67
20519111--20519144	12	2.8	12	95	0	59	61	14	14	8	1.55
20520128--20520191	10	6.6	10	68	13	53	60	1	1	35	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20520544--20520601	30	1.9	29	82	6	71	36	3	1	58	1.25
20520564--20520621	20	2.9	19	73	14	55	36	1	5	56	1.32
20521253--20521290	16	2.3	16	90	4	58	15	0	26	57	1.38
20521306--20521339	6	5.7	6	89	0	50	17	5	14	61	1.52
20521294--20521449	18	8.6	18	73	10	93	20	7	14	57	1.62
20521269--20521401	62	2.2	61	90	1	203	18	5	18	57	1.58
20521368--20521443	6	12.7	6	85	0	89	18	7	14	59	1.59
20521362--20521449	6	14.7	6	78	4	79	20	9	12	57	1.61
20521294--20521443	12	12.3	12	74	8	97	20	7	15	57	1.62
20521748--20521882	61	2.2	61	93	0	225	21	7	22	48	1.74
20523743--20523964	96	2.3	97	91	3	349	25	7	18	49	1.72
20523910--20523972	31	2.1	28	85	8	81	23	6	14	55	1.62
20523875--20523972	28	3.6	27	73	21	89	24	7	14	54	1.65
20523875--20523972	26	3.6	25	73	17	81	24	7	14	54	1.65
20525415--20525497	36	2.3	36	93	0	139	46	25	8	19	1.77
20525432--20525518	36	2.4	36	86	3	104	51	22	6	18	1.69
20525856--20525921	3	22.0	3	96	0	123	0	31	0	68	0.90
20526260--20526286	14	1.9	14	100	0	54	74	0	0	25	0.83
20528229--20528259	3	10.3	3	100	0	62	32	0	32	35	1.58
20530782--20530922	75	1.9	75	100	0	282	38	5	24	31	1.79
20530980--20531013	17	2.0	17	88	0	50	35	8	2	52	1.47
20531687--20531739	3	17.7	3	100	0	106	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20534014--20534072	24	2.5	24	75	10	59	10	23	37	28	1.88
20534043--20534272	39	6.0	39	74	9	150	8	19	37	34	1.81
20534076--20534122	24	2.0	24	86	0	67	14	10	40	34	1.81
20534122--20534167	15	3.1	15	90	0	65	2	23	39	34	1.67
20534125--20534222	15	6.3	15	71	11	63	5	21	37	35	1.76
20534036--20534272	114	2.1	113	82	6	282	8	19	37	35	1.81
20546383--20546486	55	1.9	55	81	0	127	20	21	30	27	1.98
20547586--20547665	41	2.0	41	82	5	99	27	25	21	26	1.99
20548938--20548970	10	3.3	10	91	0	57	42	6	18	33	1.75
20549494--20549552	28	2.1	28	83	0	73	52	1	30	15	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128