genome.fa.s12.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr5
Parameters: 2 7 7 80 10 50 1000
Length:  43060996

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   

This is table  20  of  128  ( 15303 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5927173--5927308	43	3.2	43	67	12	125	23	22	25	28	1.99
5928746--5928792	21	2.2	21	88	0	67	25	38	10	25	1.88
5928878--5928930	13	4.0	13	80	4	70	16	15	0	67	1.23
5928878--5928930	20	2.7	20	87	0	88	16	15	0	67	1.23
5928878--5928931	7	8.0	7	83	8	76	16	14	0	68	1.21
5929758--5929808	24	2.1	24	85	0	66	7	5	1	84	0.85
5929781--5929807	7	3.9	7	100	0	54	11	0	0	88	0.50
5932013--5932092	39	2.0	40	97	2	153	28	15	16	40	1.88
5937369--5937690	43	7.5	42	87	5	357	25	30	18	25	1.98
5937369--5937690	86	3.8	85	86	2	423	25	30	18	25	1.98
5937369--5937692	129	2.5	128	85	2	434	25	30	18	25	1.98
5942098--5942259	7	22.9	7	72	12	71	40	36	0	22	1.55
5942138--5942256	35	3.4	35	76	3	105	42	33	0	23	1.54
5943297--5943620	41	7.9	41	82	4	341	29	29	19	21	1.97
5949556--5949584	12	2.3	13	94	5	51	20	6	6	65	1.40
5959461--5959504	13	3.4	13	84	12	63	47	0	22	29	1.51
5962598--5962756	61	2.6	60	81	7	169	23	23	32	19	1.97
5969564--5969882	173	1.8	173	86	2	462	20	24	31	24	1.98
5970360--5970574	62	3.5	62	90	1	324	23	26	31	19	1.98
5975736--5975777	18	2.4	18	88	4	59	40	14	4	40	1.67
5976448--5976512	22	3.0	22	76	0	67	44	16	21	16	1.86
5976503--5976581	32	2.5	32	85	6	99	40	17	20	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5976581--5976634	26	2.1	26	85	0	72	37	24	22	16	1.94
5976750--5976807	24	2.4	24	85	5	73	48	22	6	22	1.74
5976854--5977023	53	3.2	50	83	6	171	23	25	19	31	1.98
5976853--5977023	27	6.4	27	81	6	197	23	25	19	31	1.98
5977015--5977165	27	5.3	27	73	14	124	24	15	18	41	1.90
5983496--5983551	29	1.9	29	92	0	94	44	26	8	19	1.80
5985878--5985953	23	3.3	23	86	0	107	30	25	21	23	1.99
5988540--5988614	23	3.3	23	84	0	105	30	24	21	24	1.99
5997230--5997268	14	2.9	14	88	3	53	64	0	0	35	0.94
6006075--6006190	7	16.6	7	77	3	99	43	1	24	30	1.64
6007611--6007659	18	2.7	18	80	0	62	38	16	2	42	1.60
6008174--6008266	23	3.9	24	77	16	95	25	47	4	22	1.70
6008173--6008266	47	2.0	47	97	0	179	25	47	4	22	1.69
6008174--6008260	24	3.7	23	78	15	97	26	49	3	20	1.65
6019421--6019598	86	2.1	87	95	1	322	42	7	7	42	1.61
6020222--6020336	57	2.0	57	87	0	167	48	25	4	21	1.68
6030039--6030081	5	8.6	5	78	0	50	39	2	18	39	1.64
6030039--6030081	20	2.2	20	91	0	68	39	2	18	39	1.64
6032961--6033014	25	2.2	25	93	6	92	31	3	16	48	1.64
6040381--6040447	28	2.4	28	92	7	109	20	31	19	28	1.97
6043451--6043476	12	2.2	12	100	0	52	7	23	38	30	1.83
6053947--6053985	20	1.9	21	85	15	55	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6059641--6059687	24	2.0	24	84	16	62	31	0	17	51	1.46
6076295--6076333	20	2.0	20	90	10	62	15	23	5	56	1.59
6076543--6076728	50	3.6	50	83	4	210	23	29	20	25	1.99
6086946--6087180	120	2.0	120	95	0	425	31	26	18	23	1.97
6092266--6092909	344	1.9	344	94	0	1144	22	23	21	31	1.98
6093244--6093291	18	2.7	18	78	9	62	39	16	2	41	1.60
6098901--6098940	16	2.5	16	91	0	71	40	7	25	27	1.82
6098922--6099014	44	2.1	44	92	6	152	33	4	25	36	1.76
6108891--6108942	18	2.7	19	77	14	54	40	5	19	34	1.75
6109539--6109620	31	2.7	30	76	16	87	28	0	7	64	1.20
6109842--6109928	35	2.5	35	90	0	138	24	25	19	31	1.98
6111096--6111143	25	1.9	25	83	8	62	56	18	6	18	1.62
6111920--6111987	30	2.3	30	84	2	102	48	16	7	27	1.72
6112025--6112109	9	9.4	9	82	5	109	41	24	10	23	1.86
6115576--6115613	19	2.0	19	89	0	58	34	13	2	50	1.55
6116350--6116385	18	2.0	18	94	0	63	58	0	0	41	0.98
6119500--6119527	12	2.3	12	100	0	56	7	17	7	67	1.37
6126055--6126091	16	2.4	16	83	16	51	21	5	0	72	1.04
6133723--6133822	37	2.7	37	85	3	112	40	18	9	33	1.81
6139620--6139687	30	2.2	31	86	2	93	47	17	2	32	1.63
6140715--6140774	27	2.2	27	93	0	102	28	28	26	16	1.97
6141407--6141552	75	1.9	74	82	9	179	50	7	4	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6146905--6146935	12	2.6	12	94	0	53	61	19	0	19	1.35
6147121--6147164	3	14.7	3	100	0	88	68	31	0	0	0.90
6147296--6147335	11	3.7	11	90	6	64	0	30	0	70	0.88
6147415--6147479	27	2.4	26	92	5	103	18	27	27	26	1.98
6147430--6147488	27	2.2	27	90	0	91	16	30	27	25	1.97
6147552--6147596	22	2.0	22	95	0	81	57	0	6	35	1.25
6148392--6148426	16	2.2	16	90	10	54	17	5	0	77	0.96
6149068--6149144	33	2.4	33	85	6	106	45	3	0	50	1.20
6149124--6149163	20	2.0	20	95	0	71	60	5	2	32	1.32
6149186--6149213	11	2.5	11	100	0	56	64	7	0	28	1.20
6149188--6149298	3	36.3	3	70	25	65	63	1	4	30	1.25
6149217--6149300	12	6.9	12	75	16	75	61	0	4	33	1.17
6149217--6149259	11	3.8	11	87	3	59	60	0	2	37	1.10
6149219--6149272	29	2.0	29	85	10	78	61	0	3	35	1.14
6149188--6149298	15	8.1	14	78	18	94	63	1	4	30	1.25
6149216--6149300	37	2.4	37	81	12	101	62	0	4	32	1.16
6149322--6149406	14	5.9	14	77	12	91	54	2	1	42	1.21
6149326--6149420	44	2.2	42	88	3	136	50	4	2	43	1.33
6156038--6156062	13	1.9	13	100	0	50	64	20	8	8	1.46
6159109--6159296	54	3.3	55	67	22	150	20	2	29	47	1.61
6160302--6160377	2	38.0	2	86	0	107	3	50	1	44	1.29
6163593--6163674	24	3.4	24	74	1	83	26	23	25	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6167472--6167744	137	2.0	137	92	1	458	43	8	13	35	1.73
6174929--6175023	47	2.0	48	95	2	174	26	10	28	34	1.89
6183688--6183756	20	3.5	19	69	9	57	14	28	18	37	1.91
6183649--6183819	80	2.1	80	81	2	200	19	26	16	37	1.93
6183651--6183825	40	4.4	40	80	2	181	20	26	15	37	1.92
6191140--6191179	21	1.9	21	84	0	53	57	0	5	37	1.21
6192964--6193019	26	2.2	26	93	0	94	30	14	14	41	1.85
6209697--6209829	23	5.8	23	73	6	81	18	5	33	43	1.72
6209627--6209826	93	2.2	93	85	5	262	19	5	31	44	1.72
6209629--6209830	48	4.3	47	72	10	155	19	4	30	45	1.71
6212058--6212099	13	3.0	14	80	19	52	66	0	2	30	1.04
6221138--6221170	6	5.7	6	96	3	59	12	18	18	51	1.76
6232246--6232376	27	4.9	27	82	0	163	45	19	15	19	1.86
6232234--6232376	54	2.6	54	91	0	214	44	18	15	21	1.86
6232418--6232483	25	2.6	25	92	0	114	25	12	16	45	1.82
6246235--6246316	42	2.0	42	85	4	112	21	23	36	18	1.95
6246242--6246331	42	2.1	42	82	8	103	22	24	34	18	1.96
6247343--6247390	20	2.4	20	75	0	51	8	29	12	50	1.69
6255374--6255518	27	5.4	27	79	3	157	20	16	17	44	1.86
6255373--6255528	81	1.9	81	88	2	233	21	16	17	44	1.87
6257442--6257590	22	6.5	22	72	15	99	42	32	4	20	1.73
6257465--6257597	23	5.8	22	72	11	97	42	33	5	18	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6257457--6257665	48	4.5	48	75	17	181	42	33	5	19	1.74
6257456--6257670	93	2.3	93	87	4	292	40	33	5	20	1.74
6259670--6259721	27	1.9	27	88	0	77	9	42	19	28	1.82
6267733--6267909	43	4.1	42	78	9	169	23	16	28	31	1.96
6267745--6267910	86	1.9	86	86	2	235	25	16	28	29	1.97
6273712--6273741	15	2.0	15	93	0	51	30	0	13	56	1.37
6274144--6274194	13	4.0	13	84	5	59	3	56	0	39	1.18
6274144--6274197	25	2.2	25	82	0	63	3	59	0	37	1.15
6274146--6274199	18	3.0	17	82	12	63	3	57	0	38	1.17
6276713--6276752	20	2.0	20	85	0	53	42	15	12	30	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128