genome.fa.s190.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  11  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1166518--1167223	158	4.4	159	73	9	466	24	30	26	17	1.97
1166519--1167045	158	3.3	158	75	7	510	24	30	26	17	1.97
1166518--1167118	318	1.9	316	84	4	807	24	31	27	17	1.97
1166519--1167106	158	3.7	157	73	9	473	24	31	27	17	1.97
1167006--1167498	171	2.9	170	77	4	449	24	32	24	18	1.97
1167506--1167558	26	2.0	26	92	7	90	28	22	22	26	1.99
1168370--1168422	26	2.0	26	85	0	70	26	16	26	30	1.97
1168027--1168473	184	2.4	182	82	3	531	23	27	27	21	1.99
1170405--1170457	26	2.0	26	88	0	79	24	22	20	32	1.98
1177003--1177081	26	3.0	26	86	0	113	26	25	20	27	1.99
1177824--1177876	26	2.0	26	85	7	72	28	20	20	30	1.98
1178191--1178243	26	2.0	26	89	7	81	24	26	18	30	1.98
1178217--1178717	159	3.2	158	77	4	562	20	27	29	22	1.98
1178691--1178743	26	2.0	26	89	7	81	26	20	20	32	1.98
1179385--1179437	26	2.0	26	88	0	79	28	26	18	26	1.98
1180048--1180445	210	1.9	210	82	1	501	21	25	28	25	1.99
1180904--1180956	26	2.0	26	89	7	81	28	24	20	26	1.99
1181113--1181164	26	2.0	25	85	3	68	36	26	11	25	1.90
1181456--1181506	26	2.0	26	88	0	75	33	21	15	29	1.94
1182179--1182228	26	1.9	26	95	0	91	34	28	12	26	1.92
1182525--1182579	26	2.1	27	93	3	94	21	29	20	29	1.98
1182872--1182923	26	2.0	26	88	0	77	26	25	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183597--1183649	26	2.0	26	85	7	72	30	18	16	33	1.94
1184106--1184158	26	2.0	26	89	7	81	26	22	22	28	1.99
1183947--1184308	183	2.0	184	82	5	446	20	25	28	25	1.99
1184460--1184512	26	2.0	26	88	0	79	28	28	16	26	1.97
1184486--1184862	158	2.4	158	75	9	390	18	27	31	23	1.97
1185317--1185367	26	2.0	26	88	7	77	33	21	15	29	1.94
1186375--1186421	24	2.0	24	91	8	78	31	23	12	31	1.92
1186492--1186524	11	3.0	11	95	0	57	15	27	39	18	1.90
1187131--1187614	158	3.1	157	75	5	472	21	26	28	23	1.99
1187671--1187696	12	2.2	12	100	0	52	30	26	34	7	1.85
1188059--1188613	158	3.4	158	76	6	445	17	25	31	25	1.97
1188334--1188806	170	2.8	170	79	4	497	21	26	29	22	1.99
1188944--1189305	158	2.3	159	78	6	360	19	24	30	25	1.98
1189487--1189539	26	2.0	26	88	0	79	28	26	18	26	1.98
1189671--1189722	26	2.0	26	88	7	79	28	25	17	28	1.97
1190026--1190077	26	2.0	26	85	7	70	32	25	11	30	1.91
1190718--1190770	26	2.0	26	85	0	70	26	26	18	28	1.98
1190797--1191119	170	1.9	170	81	2	389	18	26	30	23	1.98
1191394--1191446	26	2.0	26	85	7	72	28	22	18	30	1.98
1191747--1192136	152	2.5	151	77	9	385	19	26	30	23	1.98
1192247--1192299	26	2.0	26	82	7	63	30	28	15	26	1.96
1192090--1192434	184	1.9	185	82	3	444	21	26	28	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1192590--1192642	26	2.0	26	92	7	90	26	24	20	28	1.99
1193303--1193355	26	2.0	26	88	0	79	30	26	18	24	1.98
1193401--1193817	159	2.6	156	81	4	478	17	28	30	23	1.97
1196141--1196193	26	2.0	26	88	0	79	28	20	24	26	1.99
1195614--1196594	368	2.6	367	80	5	979	24	28	25	21	1.99
1197009--1197061	26	2.0	26	82	7	63	26	15	24	33	1.95
1197719--1197771	26	2.0	26	82	13	65	30	16	22	30	1.96
1197744--1198108	158	2.3	158	81	4	439	25	30	26	17	1.97
1197744--1198190	159	2.8	158	78	7	447	24	30	27	17	1.97
1198720--1199110	159	2.5	158	79	5	410	21	31	27	20	1.98
1199092--1199141	26	1.9	26	91	0	82	28	16	26	30	1.96
1199815--1199866	26	2.0	26	88	0	77	34	17	21	26	1.95
1199999--1200056	26	2.2	27	84	3	73	25	22	24	27	2.00
1199815--1200177	185	2.0	184	82	4	444	24	31	25	18	1.97
1200024--1200434	159	2.6	158	80	3	405	23	32	27	16	1.95
1201382--1201434	26	2.0	26	85	0	70	22	16	26	33	1.96
1207986--1208055	26	2.7	26	100	0	140	30	20	24	25	1.99
1208032--1208530	158	3.2	158	74	3	383	22	29	27	19	1.98
1208504--1208554	26	2.0	26	92	0	84	25	17	27	29	1.98
1208884--1209646	343	2.2	343	81	3	856	24	30	26	18	1.98
1210697--1211096	158	2.5	158	80	3	439	26	29	26	18	1.98
1211024--1211170	75	2.0	75	89	2	224	27	26	28	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1211245--1211297	26	2.0	26	88	0	79	28	20	24	26	1.99
1211967--1212019	26	2.0	26	89	7	81	30	20	22	26	1.98
1212186--1212238	26	2.0	26	88	0	79	26	18	26	28	1.98
1212892--1212944	26	2.0	26	89	7	81	24	16	26	32	1.97
1213137--1213579	153	2.9	152	75	8	401	22	28	27	21	1.99
1212145--1213686	716	2.2	706	83	3	1921	23	28	25	22	1.99
1213608--1213660	26	2.0	26	92	0	88	24	18	28	28	1.98
1213443--1214452	355	2.8	358	80	6	1043	24	28	25	21	1.99
1213963--1214015	26	2.0	26	92	0	88	24	18	28	28	1.98
1213757--1214477	367	1.9	367	80	7	835	24	29	25	20	1.99
1214367--1214815	159	2.8	159	74	6	397	24	28	25	21	1.99
1213634--1215839	874	2.5	869	78	7	2182	23	28	26	21	1.99
1215717--1215765	25	2.0	25	91	0	80	26	18	28	26	1.98
1216441--1216493	26	2.0	26	92	7	90	30	20	22	26	1.98
1216565--1217277	317	2.2	317	83	3	891	22	30	26	19	1.98
1216467--1217277	159	5.2	158	75	5	673	23	30	27	19	1.98
1218124--1218176	26	2.0	26	96	0	97	24	20	28	26	1.99
1218846--1218898	26	2.0	26	89	7	81	28	18	26	26	1.98
1218871--1219234	159	2.3	159	76	7	378	24	28	26	19	1.99
1219348--1219400	26	2.0	26	85	0	70	28	18	22	30	1.98
1219439--1219463	13	1.9	13	100	0	50	24	16	48	12	1.79
1219716--1219768	26	2.0	26	89	7	81	28	18	24	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1221074--1221576	159	3.2	158	76	5	408	22	29	26	21	1.99
1222272--1222324	26	2.0	26	92	7	90	30	20	22	26	1.98
1222767--1222824	26	2.2	26	81	9	64	24	17	24	34	1.96
1223832--1223884	26	2.0	26	85	7	72	28	18	24	28	1.98
1224752--1224804	26	2.0	26	89	7	81	28	16	24	30	1.97
1224778--1225279	158	3.2	158	77	6	512	23	30	27	18	1.98
1224777--1225223	159	2.8	158	78	6	429	23	31	27	17	1.97
1225256--1225305	26	1.9	26	87	0	73	24	20	30	26	1.98
1223642--1225434	710	2.5	709	79	3	2003	24	29	26	20	1.99
1225817--1226192	159	2.4	159	82	0	394	23	30	28	18	1.97
1225920--1226280	159	2.3	159	82	3	424	19	32	29	18	1.95
1226293--1226344	26	2.0	26	88	7	79	26	13	26	32	1.94
1227540--1227592	26	2.0	26	85	7	72	30	20	22	26	1.98
1227883--1227935	26	2.0	26	88	0	79	24	16	28	30	1.97
1228093--1228143	26	2.0	26	88	7	77	33	17	19	29	1.95
1227012--1228455	539	2.7	551	78	6	1237	24	28	26	20	1.99
1228594--1228646	26	2.0	26	92	0	88	24	18	28	28	1.98
1228975--1229027	26	2.0	26	85	7	72	30	16	22	30	1.96
1229141--1229485	159	2.2	159	80	4	372	22	29	28	20	1.98
1229485--1229985	158	3.2	159	74	4	476	23	27	26	22	1.99
1229960--1230011	26	2.0	26	85	7	70	26	17	25	30	1.97
1229800--1230168	183	2.0	184	80	0	416	24	26	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1229129--1230417	499	2.6	500	83	2	1651	23	28	27	20	1.99
1229984--1230690	328	2.2	319	81	6	764	24	29	26	19	1.99
1235296--1235348	26	2.0	26	85	7	72	30	18	22	28	1.98
1235474--1236202	342	2.1	340	81	3	849	25	27	25	21	1.99
1236504--1236554	26	2.0	26	88	7	77	29	19	21	29	1.98
1236601--1237030	159	2.7	157	78	8	447	23	28	26	20	1.99
1237753--1238254	158	3.2	158	77	5	449	24	30	26	19	1.98
1238624--1238673	26	1.9	26	88	8	75	30	20	22	28	1.98
1238649--1239013	158	2.3	158	76	5	367	26	30	23	19	1.98
1246634--1247135	158	3.2	158	76	4	483	23	28	27	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93