genome.fa.s190.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  24  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3057639--3058148	35	14.2	35	72	10	233	22	13	10	54	1.68
3057639--3058195	105	5.2	105	71	11	311	21	13	10	54	1.69
3057910--3058200	35	8.3	36	75	9	194	19	13	10	55	1.68
3059018--3059222	35	5.9	35	82	2	142	23	16	9	50	1.74
3059040--3064311	35	148.9	35	68	12	1065	19	15	11	52	1.73
3059761--3059901	71	2.0	70	83	6	178	19	15	9	54	1.69
3059762--3067454	106	72.5	104	68	12	828	19	16	11	52	1.74
3059312--3070126	70	152.9	70	69	12	1716	19	16	11	52	1.74
3059312--3075614	70	230.7	69	69	11	1306	19	15	11	52	1.74
3061093--3061206	34	3.3	35	85	3	151	22	20	6	50	1.70
3062520--3148987	141	611.1	139	68	12	4867	19	16	11	51	1.75
3062520--3063184	71	9.4	69	74	9	336	19	14	11	54	1.71
3063839--3064020	67	2.6	69	77	6	163	19	12	14	53	1.72
3064051--3064311	139	1.9	141	80	6	307	19	16	10	53	1.72
3064047--3064375	174	1.9	174	79	8	375	20	16	10	52	1.72
3063529--3064479	35	27.3	35	69	11	236	19	16	11	52	1.74
3064396--3064479	34	2.4	35	86	2	116	20	11	10	57	1.64
3064514--3084885	35	573.8	35	67	13	1629	19	16	12	52	1.74
3064514--3149431	105	799.6	104	68	13	9433	19	16	11	51	1.75
3065293--3065497	36	5.8	35	76	7	139	18	18	10	53	1.72
3065607--3065764	82	1.9	82	83	2	201	24	15	5	54	1.63
3068186--3068691	106	4.8	106	75	8	392	19	15	13	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3063420--3147824	70	1190.3	70	67	14	4639	19	16	11	51	1.75
3068519--3068743	106	2.1	105	80	4	247	20	14	12	52	1.73
3069992--3070125	36	3.8	36	76	8	116	19	14	11	53	1.72
3069993--3070128	72	1.9	71	85	7	186	19	15	11	53	1.72
3070255--3070281	14	1.9	14	100	0	54	37	0	11	51	1.37
3070377--3070788	104	3.9	104	75	6	260	17	16	13	51	1.77
3070483--3072172	106	15.9	106	70	9	417	19	16	12	52	1.75
3071004--3071405	176	2.3	176	79	8	435	18	17	12	52	1.75
3071926--3072024	36	2.8	35	83	8	137	19	13	11	56	1.66
3073663--3073817	81	1.9	81	86	0	220	23	10	8	56	1.61
3073743--3073893	71	2.1	71	84	3	198	19	12	11	55	1.68
3074198--3074426	104	2.2	104	79	5	248	19	13	13	53	1.73
3074371--3074504	68	2.0	68	83	2	171	18	14	14	52	1.74
3074254--3074603	104	3.4	102	75	11	264	18	15	12	53	1.73
3074439--3074647	106	2.0	107	80	4	235	17	17	12	52	1.74
3074946--3075181	104	2.3	105	78	2	242	22	15	10	51	1.73
3074875--3075232	139	2.6	140	76	4	346	22	14	9	53	1.69
3075278--3075334	30	1.9	30	89	3	89	17	17	14	50	1.77
3075115--3075790	208	3.2	208	74	9	485	17	14	13	55	1.70
3075963--3076115	83	1.8	83	80	5	184	24	13	6	54	1.62
3076426--3076484	17	3.2	20	65	20	56	16	15	11	55	1.68
3077909--3078203	69	4.2	65	74	15	184	18	16	9	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3078118--3078203	36	2.4	36	78	16	90	17	16	9	56	1.65
3078194--3078341	77	1.9	77	81	2	181	18	16	15	49	1.80
3078535--3078673	36	3.9	36	72	14	110	20	17	13	48	1.80
3078948--3079007	18	3.4	18	71	13	52	23	10	8	58	1.57
3079447--3079603	82	1.9	82	86	0	224	20	10	10	58	1.60
3079564--3079661	36	2.8	35	85	3	133	20	14	11	54	1.70
3079780--3080013	71	3.3	70	78	3	200	17	16	13	52	1.74
3079775--3080117	177	2.0	174	82	6	424	17	14	13	53	1.72
3079952--3080150	69	2.9	69	81	4	211	17	14	15	53	1.73
3080795--3080846	27	1.9	27	92	0	86	21	25	5	48	1.72
3080696--3080942	132	1.9	133	81	0	307	21	17	10	51	1.73
3081436--3081495	18	3.3	18	67	17	52	21	6	13	58	1.58
3081935--3081999	32	2.0	33	87	3	96	21	21	7	49	1.74
3083129--3083427	139	2.1	140	82	6	356	19	17	11	52	1.74
3083129--3083390	104	2.5	103	81	6	260	19	17	10	51	1.75
3085155--3085860	35	20.1	35	72	10	156	19	15	11	53	1.72
3085920--3086080	35	4.6	35	75	1	142	16	8	14	60	1.58
3086249--3086391	35	4.1	35	70	15	98	19	13	12	54	1.70
3086416--3086457	22	1.9	22	95	0	75	23	21	2	52	1.59
3086518--3087709	35	33.9	35	72	8	487	19	15	11	52	1.73
3087467--3087558	36	2.6	35	81	3	103	17	17	13	52	1.75
3087736--3088509	35	22.1	35	75	10	433	19	17	12	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3088012--3088073	20	3.3	20	67	28	55	16	22	9	51	1.73
3088045--3088104	21	3.2	21	63	30	53	13	20	13	53	1.72
3088289--3088509	69	3.2	69	82	7	191	19	14	12	53	1.72
3088289--3088489	34	5.8	35	77	6	149	18	13	13	53	1.72
3089078--3089237	72	2.3	70	85	4	214	16	18	11	53	1.73
3089113--3089279	72	2.3	70	83	8	194	16	15	14	53	1.74
3089029--3090941	35	54.2	35	70	10	346	19	16	12	52	1.74
3089901--3090172	104	2.6	105	77	5	248	20	15	11	52	1.73
3091209--3091686	35	13.3	35	71	10	257	19	16	11	53	1.73
3091490--3091638	81	1.9	81	81	7	187	17	16	12	53	1.72
3091315--3091789	256	1.9	256	80	5	575	19	14	12	53	1.72
3091571--3091878	35	8.8	34	73	11	151	20	13	12	53	1.72
3092244--3092889	35	18.4	35	73	7	184	18	16	12	52	1.74
3092354--3092625	139	2.0	140	80	5	318	19	17	11	51	1.75
3092963--3093402	35	12.5	35	73	6	271	19	16	11	52	1.74
3093435--3093778	35	9.8	35	71	12	186	18	14	11	55	1.69
3093831--3094065	35	6.7	35	70	11	142	22	16	11	50	1.76
3094179--3149430	35	1556.8	36	68	12	6487	19	16	11	51	1.75
3094353--3094513	82	2.0	81	83	3	207	21	12	8	57	1.62
3095168--3095236	19	3.8	19	77	12	74	17	8	7	66	1.41
3095594--3095686	47	2.0	47	87	4	134	23	16	6	53	1.65
3096800--3096892	47	2.0	47	82	0	114	24	15	7	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3096857--3097260	209	1.9	212	82	5	516	20	16	11	51	1.75
3097645--3097782	71	2.0	70	81	4	161	18	18	11	52	1.74
3098310--3098460	74	2.0	75	94	3	268	16	19	11	52	1.74
3098344--3098464	38	3.2	38	66	18	101	15	20	12	51	1.76
3098320--3098487	74	2.3	73	86	8	225	16	20	10	52	1.73
3098206--3098536	183	1.8	178	81	9	402	18	19	11	50	1.77
3098787--3098992	71	2.9	70	78	8	209	21	20	7	50	1.72
3100371--3100682	142	2.2	141	81	5	353	18	17	10	53	1.72
3100037--3100803	248	3.1	247	82	5	750	18	17	11	52	1.73
3102181--3102310	69	1.9	69	80	6	156	15	15	13	55	1.70
3102222--3102425	99	2.0	102	81	10	242	16	15	11	55	1.68
3102428--3102542	60	1.9	60	82	7	144	17	20	14	46	1.83
3103084--3103289	102	2.0	102	91	1	333	18	14	12	54	1.70
3103469--3103525	18	3.2	18	66	14	55	17	15	8	57	1.63
3103772--3103942	71	2.4	71	81	1	191	20	13	11	54	1.68
3103906--3104041	69	1.9	71	82	2	168	19	16	13	51	1.76
3105265--3105401	71	1.9	70	80	4	159	18	22	10	48	1.77
3105386--3105424	20	2.0	20	89	0	60	20	20	12	46	1.83
3105437--3105595	82	1.9	82	79	2	176	22	15	7	54	1.65
3106473--3106665	71	2.7	70	75	2	181	15	20	14	49	1.80
3107863--3108058	71	2.8	69	77	6	207	21	16	11	51	1.75
3108151--3108539	176	2.2	175	79	3	415	19	17	12	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3109057--3109216	71	2.3	70	79	3	169	16	18	15	50	1.79
3109277--3109349	37	2.0	37	97	0	137	20	5	15	58	1.56
3109936--3110122	67	2.7	70	82	6	220	21	19	8	50	1.74
3109936--3110122	102	1.8	102	84	0	257	21	19	8	50	1.74
3110427--3110487	19	3.4	18	69	15	54	22	8	11	57	1.60
3111870--3111965	33	2.8	34	81	6	106	17	17	9	55	1.68
3112325--3112587	104	2.5	105	81	6	275	19	18	11	51	1.75
3112710--3112747	16	2.4	16	86	4	51	18	13	7	60	1.56
3112846--3113041	69	2.8	69	78	9	193	18	16	12	52	1.75
3114010--3114602	317	1.9	317	79	5	671	21	17	10	50	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93