genome.fa.s190.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  48  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6037403--6037461	15	3.9	15	80	10	59	86	6	1	5	0.76
6038370--6038426	3	19.0	3	85	0	78	31	5	0	63	1.17
6038371--6038457	9	9.2	9	73	14	59	22	5	1	70	1.16
6039297--6039348	5	10.2	5	88	12	63	17	3	0	78	0.89
6040567--6040619	26	2.1	25	82	3	61	43	3	16	35	1.67
6040628--6040700	31	2.4	31	90	0	110	24	24	23	27	2.00
6041026--6041068	5	8.6	5	89	0	68	23	41	34	0	1.55
6041094--6041125	12	2.7	12	100	0	64	12	0	6	81	0.87
6041091--6041143	27	2.0	27	84	0	70	15	1	9	73	1.17
6041161--6041759	152	3.9	153	93	2	949	29	15	17	37	1.90
6044806--6044830	11	2.3	11	100	0	50	0	8	0	92	0.40
6044791--6044830	19	2.0	20	90	4	64	0	15	0	85	0.61
6052818--6053275	116	3.9	116	77	6	399	24	24	13	37	1.91
6053686--6053768	26	3.2	26	77	0	94	22	24	25	27	2.00
6053799--6053889	3	31.0	3	88	2	78	24	3	7	64	1.35
6053854--6053891	19	2.0	19	89	0	58	26	5	0	68	1.11
6054739--6054782	14	3.2	13	84	12	52	15	0	2	81	0.78
6058841--6058889	20	2.4	21	80	19	59	26	4	14	55	1.57
6062634--6062693	14	4.4	13	78	15	59	23	3	1	71	1.10
6062638--6062697	28	2.1	29	84	9	79	23	3	1	71	1.10
6063016--6063054	18	2.2	18	86	9	53	12	5	0	82	0.83
6064568--6064757	4	49.8	4	67	18	93	26	3	2	67	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6064574--6064657	14	5.9	14	74	14	66	25	2	1	71	1.05
6064573--6064657	31	2.8	31	81	11	106	24	2	1	71	1.04
6064570--6064725	10	17.0	9	68	22	53	26	3	3	66	1.22
6064682--6064724	19	2.2	20	91	4	70	27	4	2	65	1.25
6064688--6064755	19	3.7	18	75	22	70	29	4	1	64	1.21
6064662--6064755	47	2.0	46	82	10	111	28	4	3	63	1.28
6065021--6065071	12	4.4	11	76	18	50	23	1	17	56	1.51
6065647--6065735	6	14.7	6	69	19	51	12	6	1	79	0.97
6065666--6065735	5	13.8	5	71	14	54	14	7	0	78	0.95
6065667--6065722	16	3.5	16	92	4	87	12	8	0	78	0.96
6065648--6065735	22	3.7	24	73	18	58	12	6	1	79	0.98
6065673--6065730	16	3.4	18	84	15	79	13	8	0	77	0.98
6065647--6065740	18	5.0	20	77	17	71	12	7	1	78	1.00
6065748--6066141	59	6.8	59	77	14	374	42	8	13	35	1.74
6065764--6066083	117	2.7	118	82	6	393	42	8	13	35	1.75
6065816--6065905	29	3.2	27	67	27	69	40	6	15	37	1.74
6065769--6066142	117	3.2	110	74	15	317	41	8	13	36	1.75
6076521--6076550	14	2.1	14	100	0	60	80	0	13	6	0.91
6077535--6077882	44	8.1	42	81	12	299	25	16	18	39	1.92
6077535--6077882	85	4.1	84	78	12	309	25	16	18	39	1.92
6077535--6077832	41	7.0	41	83	7	303	25	16	19	39	1.92
6078066--6078106	6	6.8	6	81	18	50	14	0	2	82	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6078068--6078283	4	56.8	4	67	18	95	26	3	3	66	1.23
6078098--6078142	22	2.1	21	87	4	63	26	4	0	68	1.08
6078187--6078219	14	2.3	15	89	5	50	27	3	6	63	1.32
6078113--6078270	18	8.7	18	68	18	69	28	4	3	63	1.31
6079090--6079267	15	12.8	12	68	24	70	18	3	1	75	1.04
6079089--6079267	14	12.9	13	69	21	80	18	3	1	75	1.03
6079089--6079157	23	3.1	22	80	15	63	18	2	0	78	0.88
6079112--6079266	18	8.2	17	69	23	80	20	3	1	74	1.05
6079113--6079158	11	4.3	11	80	5	58	26	0	0	73	0.83
6079179--6079244	6	10.7	6	81	12	80	13	3	1	81	0.87
6079180--6079267	5	16.8	5	78	10	63	14	4	1	79	0.95
6079181--6079267	33	2.6	33	92	5	140	14	4	1	79	0.95
6079187--6079272	23	4.2	20	74	18	70	15	5	1	77	1.01
6079286--6079500	59	3.7	58	82	10	258	41	6	14	36	1.73
6079280--6079500	118	1.9	119	84	5	306	42	7	14	36	1.73
6082115--6082183	27	2.8	24	78	12	77	50	0	1	47	1.09
6082152--6082196	18	2.4	18	77	3	54	57	0	2	40	1.11
6086636--6086682	23	2.2	20	85	11	58	61	0	2	36	1.08
6087359--6087423	26	2.5	28	76	23	70	44	0	0	55	0.99
6087842--6087866	2	12.5	2	100	0	50	52	0	0	48	1.00
6090042--6090097	2	28.0	2	96	0	103	51	0	0	48	1.00
6092829--6092891	32	2.0	32	87	0	90	34	7	11	46	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6098044--6098119	19	4.1	19	72	6	66	47	1	2	48	1.24
6100484--6100545	26	2.4	25	82	12	72	66	1	4	27	1.21
6100764--6100813	19	2.6	19	81	6	57	52	0	2	46	1.12
6101042--6101080	20	2.0	20	89	0	60	35	5	15	43	1.69
6104687--6104734	21	2.3	21	78	7	53	37	0	0	62	0.95
6104748--6104777	2	15.0	2	100	0	60	50	0	0	50	1.00
6106228--6106277	22	2.2	23	89	10	77	50	0	0	50	1.00
6106772--6106798	12	2.2	12	100	0	54	25	0	0	74	0.83
6107152--6107203	20	2.6	21	82	11	65	32	3	0	63	1.12
6107394--6107446	20	2.7	19	83	13	63	41	3	1	52	1.30
6107395--6107460	20	3.3	19	76	14	62	36	3	3	57	1.29
6107419--6107471	20	2.7	20	77	8	56	41	0	3	54	1.18
6115629--6115659	14	2.2	14	100	0	62	58	12	12	16	1.64
6116604--6116633	2	15.0	2	100	0	60	50	0	0	50	1.00
6119004--6119059	7	7.7	7	78	7	58	46	1	1	50	1.22
6119487--6119602	20	5.6	20	77	7	81	43	5	1	49	1.35
6119487--6119615	21	6.2	20	73	16	86	44	5	1	48	1.35
6119623--6119762	28	4.9	29	76	6	135	46	3	2	47	1.31
6119863--6119929	10	6.5	10	72	13	55	41	4	1	52	1.31
6119873--6119961	14	6.5	14	68	19	53	41	2	3	52	1.30
6119863--6119932	21	3.4	21	78	7	74	41	4	1	52	1.30
6120967--6121038	5	13.8	5	71	23	51	76	1	5	16	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6121003--6121035	17	1.9	17	93	0	57	72	3	6	18	1.18
6121931--6121964	16	2.1	16	88	0	50	67	2	5	23	1.26
6121915--6122030	38	3.0	40	85	6	118	62	2	4	31	1.28
6121955--6122117	22	8.1	22	70	23	92	63	1	3	31	1.20
6121955--6122109	4	38.2	4	69	16	81	63	1	2	31	1.18
6121948--6122158	14	13.9	15	71	21	106	66	1	3	28	1.15
6121974--6122170	78	2.6	78	77	13	185	68	2	3	26	1.16
6122079--6122172	27	3.3	28	78	11	102	74	2	3	20	1.06
6122129--6122178	22	2.4	20	90	9	82	82	2	0	16	0.77
6122048--6122178	7	18.3	7	68	12	61	73	1	3	22	1.06
6122360--6122565	42	4.8	42	82	7	193	40	20	14	24	1.90
6122352--6122571	85	2.6	85	83	7	275	40	20	15	24	1.90
6123590--6123636	7	6.7	7	80	9	60	10	10	0	78	0.96
6123591--6123635	13	3.3	13	81	9	54	11	11	0	77	0.99
6123573--6123627	20	2.7	20	88	2	74	12	14	0	72	1.12
6123604--6123637	15	2.3	15	94	0	59	8	8	0	82	0.85
6131978--6132071	28	3.2	27	66	24	64	39	11	6	42	1.67
6132092--6132191	5	18.6	5	76	13	85	76	2	6	16	1.08
6132092--6132191	17	6.2	15	77	11	85	76	2	6	16	1.08
6132121--6132191	6	11.5	6	73	11	63	77	2	5	14	1.06
6132753--6132793	12	3.2	13	77	22	50	63	17	0	19	1.31
6133146--6133303	7	22.3	7	69	23	84	63	2	2	31	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6133172--6133303	4	33.0	4	68	17	62	63	2	2	31	1.19
6133146--6133303	38	4.2	38	74	16	127	63	2	2	31	1.21
6133165--6133309	74	1.9	78	82	10	185	62	2	2	31	1.23
6133172--6133353	15	11.9	15	67	21	85	65	2	3	28	1.20
6133436--6133518	30	2.9	28	75	19	75	40	1	2	55	1.21
6133466--6133506	19	2.2	19	86	8	57	34	0	2	63	1.08
6133638--6133682	11	4.0	11	83	13	56	37	0	4	57	1.19
6133625--6133677	22	2.5	22	84	3	72	41	0	3	54	1.18
6143460--6143524	29	2.3	29	78	2	78	53	1	3	41	1.25
6143995--6144041	22	2.2	21	88	3	67	42	0	4	53	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93