genome.fa.s190.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  64  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8915294--8915798	173	2.9	168	80	9	526	44	6	11	38	1.66
8919052--8919095	13	3.2	14	81	12	56	18	4	2	75	1.09
8919113--8919184	36	2.0	36	83	5	92	50	1	4	44	1.30
8930252--8930292	9	4.6	9	85	11	57	24	0	9	65	1.22
8930247--8930286	10	4.2	10	84	15	50	20	0	10	70	1.16
8930657--8930733	6	12.7	6	71	17	61	18	3	2	75	1.07
8930657--8930733	18	4.2	17	74	19	75	18	3	2	75	1.07
8930658--8930737	30	2.6	30	83	11	92	20	3	2	73	1.10
8954710--8954741	13	2.4	14	94	5	57	28	0	6	65	1.16
8955088--8955117	15	1.9	16	93	6	53	3	10	0	86	0.67
8955110--8955157	20	2.5	20	76	10	55	4	0	16	79	0.89
8955341--8955389	22	2.2	22	82	7	55	46	10	8	34	1.67
8955489--8955538	22	2.3	22	82	0	64	34	16	18	32	1.92
8956609--8956651	20	2.1	21	86	4	61	65	4	0	30	1.13
8957520--8957720	100	2.0	100	94	0	348	49	1	3	45	1.30
8958787--8958846	26	2.3	25	80	5	66	38	0	0	61	0.96
8958806--8958842	8	4.6	8	86	0	56	43	0	0	56	0.99
8958806--8958862	14	3.8	16	75	15	59	47	0	0	52	1.00
8958832--8958883	20	2.6	21	93	6	90	51	0	0	48	1.00
8959045--8959073	15	1.9	15	100	0	58	20	48	6	24	1.74
8959438--8959473	2	18.5	2	88	5	56	52	0	0	47	1.00
8961016--8961112	51	1.9	51	91	8	164	43	8	4	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8962123--8962221	30	3.3	30	82	4	110	48	13	1	37	1.49
8962235--8962299	29	2.2	29	81	8	78	55	9	3	32	1.47
8969113--8969138	2	13.0	2	100	0	52	50	0	0	50	1.00
8970150--8970191	11	3.8	11	81	9	50	42	0	0	57	0.99
8970149--8970204	10	5.2	11	81	12	62	48	0	0	51	1.00
8973029--8973074	23	2.0	23	100	0	92	39	4	17	39	1.69
8979322--8979362	2	20.5	2	100	0	82	48	0	51	0	1.00
8980704--8980763	2	29.5	2	79	3	66	48	5	5	41	1.47
8985845--8985899	20	2.6	21	82	5	67	30	3	3	61	1.30
8985851--8985897	21	2.3	22	85	10	64	31	2	4	61	1.27
8986213--8986273	18	3.4	19	76	17	67	60	1	3	34	1.23
8986448--8986505	17	3.5	16	79	6	62	56	1	1	39	1.19
8986702--8986751	20	2.3	22	80	13	59	42	4	4	50	1.40
8993419--8993604	92	2.0	92	93	0	318	25	14	17	42	1.87
8993457--8993597	45	3.1	45	63	24	105	26	14	15	43	1.85
8993460--8993599	43	3.1	43	63	25	99	27	14	15	43	1.84
8995357--8995460	53	2.0	53	88	3	156	31	11	8	48	1.70
9000704--9000728	6	4.2	6	100	0	50	16	0	0	84	0.63
9003182--9003211	15	2.0	15	100	0	60	46	13	26	13	1.80
9003756--9003815	29	2.1	29	87	0	84	53	1	5	40	1.33
9004189--9004222	10	3.1	11	87	12	52	26	0	2	70	1.01
9004543--9004581	8	4.9	8	83	0	51	41	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9004573--9004621	22	2.3	21	86	10	73	48	0	2	48	1.12
9004583--9004624	22	1.9	22	100	0	84	50	0	0	50	1.00
9004761--9004796	2	18.0	2	100	0	72	50	0	0	50	1.00
9007201--9007244	21	2.1	21	82	0	52	31	29	13	25	1.94
9012400--9012508	54	2.0	54	98	0	209	29	17	14	38	1.89
9016876--9016932	3	19.0	3	100	0	114	66	0	0	33	0.92
9016941--9017419	255	1.9	257	88	2	741	42	8	14	35	1.75
9017395--9017428	18	1.9	17	88	5	50	67	0	0	32	0.91
9017391--9017434	22	2.0	22	82	8	54	65	2	0	31	1.05
9018269--9018360	9	9.0	10	71	20	50	30	0	7	61	1.23
9018283--9018331	16	2.7	19	78	15	59	32	0	6	61	1.21
9018274--9018359	31	3.1	27	71	21	70	30	0	6	62	1.21
9018780--9018834	27	2.2	24	83	9	65	40	5	18	36	1.74
9018935--9018978	20	2.2	20	80	4	54	22	29	18	29	1.97
9019467--9019925	180	2.6	175	89	5	663	43	8	14	33	1.75
9019465--9019925	59	7.7	60	85	5	623	44	8	14	33	1.75
9019454--9019938	119	4.0	119	87	5	649	44	8	13	32	1.75
9023397--9023430	17	2.0	17	88	0	50	73	5	17	2	1.16
9023745--9023777	10	3.2	10	95	4	57	87	0	12	0	0.53
9023733--9023800	16	4.5	15	71	20	52	76	0	16	7	1.00
9023771--9023801	16	1.9	16	93	0	53	74	0	16	9	1.07
9025358--9025461	8	13.5	8	88	8	146	74	1	11	12	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9025358--9025470	23	4.9	23	87	12	146	73	1	12	12	1.18
9025358--9025470	15	7.4	15	82	10	115	73	1	12	12	1.18
9026507--9026993	87	6.0	81	75	19	414	25	17	20	37	1.93
9026507--9026993	42	12.0	40	75	19	417	25	17	20	37	1.93
9027020--9027079	1	60.0	1	79	0	66	90	5	0	5	0.57
9027020--9027079	15	4.2	14	85	8	77	90	5	0	5	0.57
9027264--9027348	12	7.2	12	71	20	56	29	0	5	64	1.17
9027317--9027364	18	2.7	18	80	0	60	25	0	6	68	1.12
9027345--9027460	53	2.2	53	83	11	141	28	2	3	65	1.22
9028435--9028898	60	7.8	59	86	7	636	45	8	13	33	1.73
9028439--9028898	117	3.9	118	90	5	714	45	7	13	33	1.72
9030274--9030312	20	1.9	21	85	15	55	10	5	5	79	1.04
9030274--9030312	21	1.9	20	84	5	51	10	5	5	79	1.04
9034264--9034366	53	2.0	51	84	9	136	39	12	2	44	1.57
9034317--9034431	60	1.9	60	82	7	144	35	13	6	44	1.70
9034408--9034468	31	2.0	31	87	6	88	34	3	9	52	1.51
9034439--9034730	58	4.8	58	77	9	246	36	10	6	46	1.65
9034439--9034728	64	4.7	63	79	8	221	36	10	6	46	1.65
9035865--9036309	85	5.2	85	79	4	357	45	14	19	21	1.85
9035859--9036232	85	4.4	85	80	4	364	44	14	19	20	1.86
9035809--9036236	171	2.5	168	79	4	432	44	15	18	20	1.86
9039362--9039386	1	25.0	1	100	0	50	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9039626--9039776	60	2.6	56	81	6	178	35	13	5	44	1.69
9039733--9039930	68	2.9	66	78	6	200	34	11	5	48	1.63
9042807--9042870	31	2.0	32	90	3	103	25	9	25	40	1.85
9043281--9043311	14	2.1	15	94	5	55	38	0	0	61	0.96
9043824--9043852	14	2.0	15	93	6	51	37	0	0	62	0.96
9045439--9045479	16	2.6	16	88	7	57	36	0	0	63	0.95
9047759--9047791	15	2.2	15	94	0	57	48	6	30	15	1.69
9053719--9053866	76	1.9	76	87	0	215	50	13	3	32	1.58
9054121--9054159	18	2.3	17	91	8	62	48	0	0	51	1.00
9054114--9054180	29	2.3	30	82	7	75	44	1	1	52	1.19
9054424--9054456	17	1.9	17	93	0	57	39	0	15	45	1.46
9056189--9056238	21	2.3	22	79	3	57	54	0	0	46	1.00
9057447--9057496	24	2.1	23	85	10	66	18	2	6	74	1.12
9057447--9057501	23	2.3	24	84	9	69	18	1	7	72	1.16
9057741--9057772	1	32.0	1	100	0	64	100	0	0	0	0.00
9058197--9058223	3	9.0	3	100	0	54	66	0	0	33	0.92
9060331--9060366	16	2.2	16	90	0	54	41	11	5	41	1.64
9062013--9062129	13	8.8	13	74	9	101	49	33	0	17	1.47
9062026--9062132	20	5.3	20	72	14	85	48	33	0	17	1.48
9062017--9062130	41	2.8	41	77	7	110	48	34	0	17	1.48
9063613--9063649	3	12.3	3	94	0	65	64	0	2	32	1.07
9064066--9064099	16	2.1	16	94	0	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9064100--9064144	23	2.0	23	82	8	56	42	4	0	53	1.21
9064690--9064725	16	2.3	16	90	4	56	13	16	2	66	1.36
9066198--9066230	15	2.2	15	94	0	57	48	6	30	15	1.69
9073330--9073373	21	2.1	21	91	0	70	31	13	22	31	1.93
9073783--9073814	16	2.1	16	94	5	57	46	0	0	53	1.00
9074271--9074323	25	2.1	25	100	0	106	28	22	20	28	1.99
9074818--9074860	22	2.0	22	82	13	54	27	4	11	55	1.55
9075750--9075774	3	8.3	3	100	0	50	68	0	0	32	0.90
9079604--9079666	22	2.9	22	78	4	65	42	0	0	57	0.99
9079934--9079992	6	9.7	6	75	17	59	50	3	0	45	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93