genome.fa.s190.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  16  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1634730--1634782	26	2.0	26	96	0	97	28	26	18	26	1.98
1636499--1641712	876	5.9	883	83	7	6077	25	23	25	25	2.00
1634756--1641712	877	7.9	877	84	5	8614	25	24	24	25	2.00
1639998--1640049	26	2.0	26	96	0	95	26	25	19	28	1.98
1640905--1640955	26	2.0	26	92	0	84	29	23	17	29	1.97
1639128--1641706	893	2.9	896	87	3	3723	25	23	24	25	2.00
1641448--1642007	295	1.9	295	90	1	899	25	27	24	23	2.00
1642101--1642153	26	2.0	26	96	0	97	26	24	20	28	1.99
1643116--1643168	26	2.0	26	92	0	88	28	24	18	28	1.98
1643378--1643403	4	6.5	4	100	0	52	0	73	26	0	0.84
1646113--1646163	26	2.0	26	84	0	66	33	17	19	29	1.95
1648698--1648750	26	2.0	26	100	0	106	26	26	20	26	1.99
1649145--1649203	26	2.2	27	81	6	66	59	8	6	25	1.51
1644290--1651063	859	7.8	860	81	8	6735	25	24	23	25	2.00
1652776--1652828	26	2.0	26	92	0	88	28	24	18	28	1.98
1651083--1659247	878	9.3	871	83	6	9384	25	24	24	25	2.00
1655396--1655447	26	2.0	26	92	0	86	28	25	17	28	1.97
1660297--1664777	867	5.1	867	84	6	5366	24	24	24	25	2.00
1662780--1662832	26	2.0	26	92	0	88	26	22	20	30	1.98
1663981--1665559	794	2.0	772	82	9	1867	24	23	25	25	2.00
1667963--1668015	26	2.0	26	85	7	72	28	20	18	32	1.97
1668864--1668916	26	2.0	26	92	0	88	26	22	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1672421--1672472	25	2.0	26	85	3	70	28	25	17	28	1.97
1670655--1675092	888	5.0	898	82	5	5179	26	24	23	26	2.00
1664775--1675112	901	11.7	878	83	6	11965	25	24	23	25	2.00
1674883--1675254	159	2.3	160	81	4	405	19	24	29	27	1.98
1669099--1675116	878	6.8	872	81	6	4424	26	24	23	26	2.00
1676552--1676611	26	2.2	27	82	5	68	58	8	8	25	1.55
1675055--1676817	878	2.0	874	87	2	2532	25	23	24	26	2.00
1682141--1688383	873	7.2	870	83	6	7375	25	23	24	25	2.00
1686737--1686789	26	2.0	26	88	0	79	28	20	22	28	1.99
1688418--1688468	26	2.0	26	96	0	93	27	17	25	29	1.98
1689314--1689366	26	2.0	26	92	0	88	28	18	24	28	1.98
1691790--1691842	26	2.0	26	85	0	70	30	18	20	30	1.97
1690186--1696704	874	7.5	867	80	10	6150	26	23	23	26	2.00
1694380--1696704	866	2.7	890	83	5	2730	25	23	24	25	2.00
1696102--1696157	26	2.2	26	93	0	94	25	19	25	30	1.98
1698648--1698700	26	2.0	26	92	0	88	28	18	24	28	1.98
1696702--1701333	864	5.3	869	82	7	5269	26	24	23	25	2.00
1705090--1705143	15	3.9	14	83	9	67	16	0	1	81	0.78
1705090--1705143	11	5.1	11	78	12	60	16	0	1	81	0.78
1705101--1705143	4	11.5	4	83	14	56	18	0	2	79	0.85
1705175--1705261	5	17.6	5	72	21	60	16	2	2	79	0.94
1705175--1705261	12	7.1	12	76	16	81	16	2	2	79	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1705175--1705262	30	2.9	30	81	8	106	15	3	2	78	0.99
1705279--1705733	118	3.8	118	89	4	625	44	8	13	33	1.74
1705279--1705733	59	7.7	57	84	7	563	44	8	13	33	1.74
1705278--1705733	179	2.6	172	87	6	626	44	8	13	33	1.74
1705638--1705731	27	3.3	27	64	21	66	41	8	13	36	1.75
1715363--1715953	300	2.0	302	96	0	1087	32	16	24	26	1.96
1717014--1717110	42	2.3	42	96	0	176	28	17	21	31	1.96
1717114--1717257	41	3.5	41	83	7	184	22	18	22	36	1.95
1717264--1717322	12	5.0	11	86	13	66	84	15	0	0	0.62
1717271--1717323	8	6.6	8	83	12	65	86	13	0	0	0.56
1717265--1717323	29	2.1	28	87	9	84	86	13	0	0	0.57
1717489--1717514	6	4.3	6	100	0	52	15	0	0	84	0.62
1717611--1717664	19	2.8	19	78	15	58	33	1	1	62	1.16
1717648--1717730	43	2.0	42	81	15	100	20	3	6	69	1.25
1718621--1718711	5	18.6	5	70	20	68	15	5	2	76	1.06
1718621--1718715	13	6.9	14	74	17	76	14	6	2	76	1.07
1718622--1718716	39	2.4	39	81	10	104	15	6	2	75	1.09
1718716--1719125	59	6.9	59	86	4	526	44	9	13	32	1.75
1718729--1719125	58	6.7	58	85	9	518	43	9	14	33	1.76
1720207--1723538	878	3.8	873	86	3	4424	26	24	24	25	2.00
1726630--1729693	845	3.6	849	81	9	3489	26	23	23	26	2.00
1731221--1731271	26	2.0	26	88	0	75	31	25	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1730410--1734441	874	4.6	875	85	5	5060	26	23	23	26	2.00
1739631--1739973	59	5.7	58	83	10	390	34	12	9	44	1.73
1739631--1739976	63	5.7	61	83	7	420	34	12	8	44	1.73
1739631--1739974	122	2.9	117	85	8	460	34	12	9	44	1.73
1739991--1740094	5	20.6	5	73	20	83	77	1	3	16	1.00
1739990--1740075	29	2.9	29	80	13	104	75	2	5	16	1.10
1740125--1740175	4	13.5	4	82	12	63	80	1	0	17	0.81
1740128--1740178	26	2.0	26	92	0	84	82	1	0	15	0.76
1740199--1740224	5	5.2	5	100	0	52	0	42	38	19	1.51
1740629--1740667	19	2.1	19	85	0	51	38	23	10	28	1.87
1740995--1741040	25	1.9	24	86	8	67	73	6	6	13	1.22
1740996--1741055	22	2.6	22	84	7	66	73	5	5	16	1.19
1741025--1741103	41	1.9	39	82	14	97	69	5	3	21	1.24
1741130--1741173	21	2.0	21	82	4	52	70	6	0	22	1.11
1741224--1741268	15	2.9	16	86	6	65	80	4	2	13	0.97
1741909--1741960	26	2.0	26	92	3	88	26	23	21	28	1.99
1742809--1742861	26	2.0	26	96	0	97	26	24	20	28	1.99
1741338--1743559	901	2.5	888	87	4	3060	27	24	23	25	2.00
1743518--1747445	891	4.4	886	85	4	4992	24	24	24	26	2.00
1748626--1748676	26	2.0	26	96	0	93	27	27	17	27	1.98
1749352--1749402	26	2.0	26	96	0	93	29	23	19	27	1.98
1752014--1752064	26	2.0	26	96	0	93	27	27	17	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1759398--1759450	26	2.0	26	85	7	72	26	22	22	28	1.99
1755914--1765085	899	10.4	876	83	5	10565	25	24	24	25	2.00
1762032--1762084	26	2.0	26	88	0	79	30	24	16	28	1.97
1762939--1762991	26	2.0	26	96	0	97	28	26	18	26	1.98
1767138--1767188	26	2.0	26	96	0	93	27	21	19	31	1.97
1765812--1771438	902	6.4	890	84	6	6488	25	24	23	25	2.00
1768909--1768961	26	2.0	26	96	0	97	26	24	20	28	1.99
1770763--1770787	11	2.3	11	100	0	50	20	28	32	20	1.97
1772850--1781751	874	10.2	868	83	6	10485	25	24	24	25	2.00
1776560--1776612	26	2.0	26	88	0	79	26	24	20	28	1.99
1772850--1797642	872	27.8	870	73	12	12612	25	24	24	25	2.00
1779227--1779266	21	2.0	20	85	9	55	25	22	20	32	1.98
1780146--1782505	842	2.8	823	80	7	2630	27	23	22	26	2.00
1781763--1783234	712	2.1	713	87	2	2113	26	23	23	26	2.00
1782466--1784884	873	2.8	872	87	3	3431	26	23	24	25	2.00
1797115--1797167	26	2.0	26	92	0	88	26	22	20	30	1.98
1797000--1798326	684	1.9	684	87	2	1912	26	22	24	27	2.00
1798687--1800807	901	2.4	871	83	6	2532	25	24	24	25	2.00
1800426--1800478	26	2.0	26	92	0	88	28	24	18	28	1.98
1801954--1802005	26	2.0	26	100	0	104	26	26	19	26	1.99
1804452--1805235	407	2.0	393	87	6	1128	22	23	26	27	2.00
1805728--1805780	26	2.0	26	96	0	97	30	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1806618--1806670	26	2.0	26	88	0	79	28	22	18	30	1.98
1808388--1809874	715	2.1	714	88	2	2182	26	23	24	26	2.00
1811836--1811905	7	8.9	8	77	13	58	84	1	4	10	0.82
1811841--1811927	27	3.4	26	77	19	85	79	3	4	12	1.01
1811874--1811981	43	2.5	44	77	14	118	74	4	2	18	1.12
1811955--1812102	4	36.2	4	69	20	51	66	4	1	28	1.18
1812118--1812143	6	4.3	6	100	0	52	84	0	0	15	0.62
1812109--1812153	22	2.0	22	87	8	65	80	4	0	15	0.87
1812298--1812330	7	4.7	7	85	14	50	0	0	12	87	0.53
1812338--1812681	41	8.1	42	86	8	468	35	23	16	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93