genome.fa.s190.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  43  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5364281--5364324	23	1.9	23	85	0	61	36	20	6	36	1.79
5364506--5364535	13	2.3	13	94	0	51	40	6	0	53	1.27
5365501--5365535	6	5.8	6	93	0	52	77	0	5	17	0.96
5366260--5366392	22	6.0	22	73	10	101	34	13	18	33	1.90
5366300--5366392	44	2.1	44	84	7	118	33	11	18	36	1.87
5366382--5366436	22	2.5	22	93	0	92	38	10	14	36	1.81
5366331--5366414	44	1.9	44	82	4	107	36	11	17	33	1.87
5366331--5366474	22	6.5	23	75	10	79	34	11	20	34	1.89
5366266--5366482	66	3.3	65	74	8	199	33	12	18	35	1.89
5366598--5366773	40	4.3	40	81	6	194	38	14	14	31	1.87
5366592--5366773	80	2.3	81	80	6	219	38	15	14	31	1.88
5367098--5367157	20	3.1	19	72	15	52	35	21	13	30	1.92
5368251--5368304	29	2.0	29	85	10	78	0	11	5	83	0.80
5368264--5368304	14	2.8	15	79	17	50	0	9	7	82	0.83
5369033--5369092	25	2.3	27	85	14	97	38	5	25	31	1.77
5369041--5369091	25	2.0	25	100	0	102	41	3	27	27	1.73
5369275--5369308	17	2.0	17	88	0	50	0	23	0	76	0.79
5369976--5370039	30	2.3	27	86	8	83	1	17	0	81	0.77
5369973--5370033	20	3.1	20	83	6	72	1	19	0	78	0.83
5369974--5370037	25	2.5	26	87	5	85	1	18	0	79	0.81
5374095--5374230	35	3.8	35	75	7	96	31	8	20	39	1.82
5376244--5376294	17	2.9	17	77	5	57	25	9	0	64	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5376859--5376925	26	2.7	23	75	9	62	1	25	0	73	0.92
5377339--5377400	3	20.7	3	100	0	124	32	0	0	67	0.91
5377559--5377609	21	2.4	22	78	15	54	41	3	17	37	1.68
5378273--5378328	6	9.5	6	83	11	53	17	0	3	78	0.89
5378271--5378339	5	13.0	5	77	18	52	18	0	2	78	0.88
5378271--5378338	23	3.2	21	80	13	68	17	0	2	79	0.86
5378279--5378335	29	2.0	29	89	0	87	21	0	3	75	0.95
5378425--5378467	12	3.5	13	84	9	54	83	4	2	9	0.87
5379196--5379462	64	4.2	64	80	10	201	33	13	13	40	1.83
5379279--5379461	64	2.9	64	85	4	253	33	13	14	39	1.84
5379348--5380044	368	1.9	368	85	2	981	35	11	12	39	1.81
5384414--5384454	15	2.7	15	84	0	55	43	14	12	29	1.82
5392696--5392747	21	2.5	21	87	6	70	61	9	0	28	1.27
5393614--5393667	19	2.7	19	81	13	65	37	14	7	40	1.74
5393678--5393707	6	5.0	6	91	0	51	16	3	0	80	0.85
5394803--5395043	129	1.9	129	87	1	358	37	11	14	36	1.82
5394812--5395026	62	3.4	61	69	13	166	35	12	13	38	1.83
5394811--5395083	129	2.2	125	85	4	350	36	13	13	36	1.84
5394824--5395137	129	2.5	126	81	5	287	36	12	14	36	1.85
5409929--5409975	24	2.0	24	83	8	60	55	0	2	42	1.12
5411080--5411127	22	2.2	22	92	0	78	25	16	10	47	1.78
5412424--5412481	27	2.1	27	90	0	89	56	6	0	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5416165--5416219	10	5.9	10	73	16	55	49	0	0	50	1.00
5418322--5418454	15	8.9	15	72	10	85	19	0	30	49	1.54
5418346--5418480	31	4.4	31	77	4	130	20	2	28	48	1.61
5418354--5418475	16	7.9	15	75	9	93	20	2	27	49	1.62
5419584--5419626	20	2.3	18	80	11	50	0	2	18	79	0.85
5419963--5419987	3	8.3	3	100	0	50	36	0	0	64	0.94
5420173--5420408	88	2.7	87	85	0	292	41	18	17	22	1.90
5420299--5420650	110	3.2	110	84	2	384	36	18	22	22	1.95
5420498--5420540	22	2.0	22	85	0	59	32	20	23	23	1.98
5420610--5420672	22	2.9	22	85	7	83	26	19	25	28	1.98
5421078--5421149	25	3.1	22	80	8	63	26	11	26	36	1.90
5421103--5421160	25	2.3	25	87	0	89	32	13	22	31	1.93
5421231--5421292	25	2.5	25	89	0	97	33	14	22	29	1.94
5421057--5421318	128	2.0	128	97	0	497	28	14	24	32	1.94
5421536--5421909	130	2.9	130	87	2	466	34	16	19	29	1.94
5421536--5421909	65	5.8	64	81	4	376	34	16	19	29	1.94
5421536--5421943	33	12.5	33	80	7	388	34	15	20	29	1.94
5422758--5422804	14	3.1	15	75	24	53	6	14	0	78	0.93
5422762--5422813	27	1.9	27	84	7	70	5	17	1	75	1.10
5425030--5425086	25	2.3	25	93	0	96	35	21	14	29	1.92
5429871--5429901	16	1.9	16	93	0	53	19	0	35	45	1.51
5429922--5430013	31	2.9	31	79	10	98	23	1	29	45	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5429936--5430017	16	5.1	16	74	11	78	25	1	28	45	1.61
5431111--5431145	6	5.7	6	86	6	52	2	2	11	82	0.88
5431463--5431494	15	2.1	15	100	0	64	6	0	6	87	0.67
5432131--5432172	19	2.2	19	91	0	66	23	0	4	71	1.05
5432752--5432791	15	2.9	15	78	17	50	62	0	37	0	0.95
5433642--5433781	68	2.0	69	87	6	205	58	8	12	20	1.60
5437960--5438002	11	4.6	9	83	16	52	79	0	11	9	0.95
5437961--5437996	11	3.4	11	96	3	65	83	0	8	8	0.82
5437961--5437996	10	3.5	10	92	7	63	83	0	8	8	0.82
5437961--5438002	19	2.1	20	91	8	68	80	0	9	9	0.89
5438531--5438574	22	2.0	22	82	8	54	38	6	25	29	1.81
5438726--5438907	63	2.9	62	87	5	251	32	9	26	30	1.89
5439286--5439332	21	2.2	22	84	3	60	36	8	19	36	1.82
5439474--5439512	20	2.0	20	89	0	60	30	12	23	33	1.92
5439846--5440008	41	4.0	40	81	9	161	22	14	20	42	1.88
5440293--5440337	23	1.9	24	86	4	65	24	0	4	71	1.05
5440920--5440960	15	2.6	16	81	18	50	53	0	43	2	1.13
5440928--5440962	15	2.3	15	90	9	54	57	0	40	2	1.14
5446689--5446746	13	4.6	13	79	12	68	0	0	17	82	0.66
5446693--5446740	6	7.6	7	84	15	61	0	0	20	79	0.74
5446692--5446745	19	2.8	19	84	15	76	0	0	18	81	0.69
5446941--5447028	35	2.5	35	94	0	149	54	14	15	14	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5447016--5447137	35	3.6	35	79	7	135	54	4	16	24	1.62
5447330--5447442	35	3.3	34	75	6	84	53	13	17	15	1.74
5447695--5447861	50	3.4	50	82	0	192	35	14	16	32	1.89
5451522--5451567	13	3.6	13	80	13	51	80	6	0	13	0.89
5451522--5451569	25	1.9	25	87	8	71	81	6	0	12	0.87
5451524--5451570	15	3.2	14	80	16	51	82	6	0	10	0.82
5453011--5453171	33	5.1	32	75	8	134	46	35	1	16	1.58
5453010--5453164	49	3.3	47	80	14	158	46	35	1	16	1.58
5453010--5453172	16	10.2	16	74	13	131	47	34	1	15	1.57
5453201--5453231	16	1.9	16	93	0	53	45	35	0	19	1.51
5453137--5453243	50	2.1	51	84	8	139	51	33	0	14	1.43
5457415--5457448	9	3.8	9	96	0	59	91	0	2	5	0.51
5457414--5457454	18	2.3	19	83	12	59	87	4	2	4	0.72
5459460--5459665	109	1.9	109	85	2	288	23	18	16	40	1.91
5459666--5459708	23	1.9	23	90	4	70	25	23	23	27	2.00
5459547--5459922	126	2.9	127	86	3	506	25	19	17	38	1.93
5459782--5459848	23	3.0	23	91	2	109	23	22	22	31	1.98
5459666--5459924	132	2.0	131	88	2	385	24	20	18	37	1.94
5459833--5460021	87	2.2	86	87	2	281	23	19	17	39	1.92
5460109--5460199	23	4.0	23	91	4	132	21	16	25	36	1.94
5460109--5460182	23	3.2	23	98	0	139	21	13	25	39	1.90
5460150--5460456	132	2.3	131	87	3	436	23	20	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5460401--5460482	22	3.7	22	81	1	92	24	21	23	30	1.99
5460448--5461036	110	5.3	110	71	15	349	22	19	18	38	1.93
5460749--5460817	23	3.0	23	87	2	86	27	21	20	30	1.98
5460668--5460917	132	1.9	132	89	1	394	23	20	18	37	1.94
5460991--5461058	23	3.0	23	91	2	102	25	22	23	29	1.99
5460680--5461181	243	2.1	242	88	1	738	24	20	18	36	1.94
5460881--5461168	133	2.2	133	85	3	384	24	21	18	34	1.96
5461015--5461233	110	2.0	110	85	1	296	25	22	16	35	1.95
5460718--5461234	243	2.1	243	84	3	648	23	21	17	36	1.94
5461433--5461483	16	3.3	16	86	5	70	80	0	0	19	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93