genome.fa.s190.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  15  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1473875--1474237	159	2.3	159	95	0	636	25	29	25	19	1.98
1474881--1474933	26	2.0	26	96	0	97	26	18	26	28	1.98
1475782--1475833	26	2.0	25	92	3	86	26	19	25	28	1.98
1476632--1476684	26	2.0	26	88	0	79	30	18	22	28	1.98
1474032--1480480	873	7.4	857	79	9	5990	25	23	24	26	2.00
1480095--1480146	26	2.0	26	100	0	104	26	19	26	26	1.99
1490179--1490230	25	2.0	26	88	3	79	30	19	21	28	1.97
1488410--1491065	896	3.0	885	84	5	3235	26	23	24	25	2.00
1490599--1492517	731	2.6	718	82	7	2384	25	23	24	26	2.00
1494246--1494298	26	2.0	26	100	0	106	26	20	26	26	1.99
1497694--1497743	26	1.9	26	100	0	100	28	16	26	30	1.96
1492517--1499384	836	7.9	835	84	8	7319	25	24	24	25	2.00
1498574--1498626	26	2.0	26	96	0	97	26	18	26	28	1.98
1499458--1499508	26	2.0	26	100	0	102	27	21	23	27	1.99
1501968--1502045	38	2.1	38	92	0	129	24	24	38	12	1.90
1499484--1504328	875	5.5	874	85	6	6251	25	24	24	25	2.00
1504398--1504441	15	2.9	14	86	10	52	13	4	2	79	0.98
1504518--1504581	25	2.4	27	76	7	69	29	0	1	68	0.99
1505004--1505041	19	2.0	19	89	0	58	26	7	23	42	1.81
1505581--1505659	5	15.6	5	73	15	56	12	3	3	79	1.00
1505581--1505659	11	7.2	11	73	13	65	12	3	3	79	1.00
1505580--1505659	30	2.6	31	84	11	103	12	5	3	78	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1505683--1506017	59	5.6	59	83	6	399	42	10	14	33	1.79
1511507--1511555	25	1.9	26	95	4	91	44	8	36	10	1.68
1515270--1515322	26	2.0	26	92	0	88	26	22	20	30	1.98
1516169--1516221	26	2.0	26	92	0	88	26	26	18	28	1.98
1517762--1518137	159	2.4	159	86	0	527	19	25	31	23	1.98
1517921--1531832	871	15.8	870	84	6	15300	25	24	24	25	2.00
1519838--1519890	26	2.0	26	96	0	97	26	28	18	26	1.98
1520702--1520754	26	2.0	26	96	0	97	24	28	20	26	1.99
1521531--1521586	26	2.2	26	90	0	85	30	21	19	28	1.98
1521958--1522034	36	2.1	36	90	0	118	37	20	23	18	1.94
1522466--1522521	26	2.2	26	93	0	94	28	21	21	28	1.99
1522893--1522969	36	2.1	36	87	0	109	38	20	22	18	1.93
1528639--1528691	26	2.0	26	85	0	70	32	26	16	24	1.97
1529529--1529581	26	2.0	26	92	0	88	32	24	16	26	1.97
1526916--1531832	888	5.6	888	88	4	6685	25	24	24	25	2.00
1530417--1530469	26	2.0	26	96	0	97	28	26	18	26	1.98
1532545--1532997	179	2.5	178	83	7	565	33	13	8	45	1.73
1532545--1533007	58	7.7	60	80	9	477	33	12	7	46	1.72
1533022--1533130	5	22.6	5	72	20	90	77	2	3	15	1.02
1533022--1533130	18	5.4	18	79	19	94	77	2	3	15	1.02
1533022--1533116	23	4.1	23	71	20	63	77	3	4	14	1.04
1533022--1533210	18	11.2	17	74	15	87	75	4	3	16	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1533161--1533203	4	11.5	4	83	14	56	79	2	0	18	0.85
1533161--1533206	11	4.2	11	78	10	58	80	2	0	17	0.81
1533053--1533199	15	9.5	15	68	21	65	74	4	3	17	1.14
1534011--1534071	31	1.9	32	90	6	97	72	4	8	14	1.26
1534257--1534295	16	2.4	16	87	8	53	79	5	0	15	0.90
1534457--1534502	12	3.8	12	85	5	58	0	2	15	82	0.76
1534509--1534637	41	3.1	42	91	6	201	34	24	18	21	1.96
1534578--1534703	66	1.9	67	96	1	236	34	20	19	25	1.96
1534641--1534747	41	2.6	41	96	1	196	32	22	18	26	1.97
1535804--1535844	17	2.3	17	83	8	55	31	14	9	43	1.78
1546009--1546033	4	6.2	4	100	0	50	0	72	28	0	0.86
1546215--1546267	26	2.0	26	96	0	97	28	24	20	26	1.99
1548598--1549080	59	8.2	57	82	9	546	33	13	8	43	1.75
1548598--1549080	119	4.1	116	86	6	582	33	13	8	43	1.75
1549066--1549093	13	2.2	13	100	0	56	53	0	21	25	1.46
1549140--1549227	5	17.6	5	78	17	78	78	1	4	15	0.97
1549175--1549223	19	2.5	19	81	15	64	81	2	4	12	0.91
1550347--1550391	15	2.9	16	86	6	65	80	4	2	13	0.97
1550550--1550586	8	4.6	8	87	12	58	0	0	10	89	0.49
1550549--1550587	11	3.6	11	89	3	53	0	0	12	87	0.55
1550597--1550767	41	4.1	40	86	8	200	34	22	17	25	1.96
1551780--1551804	9	2.8	9	100	0	50	8	8	0	84	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1562209--1562669	122	3.9	118	87	7	646	32	13	8	44	1.74
1562209--1562671	60	7.7	61	88	5	644	32	13	8	45	1.74
1562209--1562670	181	2.6	179	90	5	709	32	13	8	45	1.74
1562686--1562790	5	20.6	5	76	16	92	78	1	4	15	1.01
1562686--1562790	40	2.6	39	85	8	140	78	1	4	15	1.01
1562821--1562849	4	7.5	4	92	7	51	75	0	0	24	0.80
1563665--1563723	31	2.0	31	83	12	79	72	6	8	11	1.26
1563705--1563786	43	2.0	41	81	13	96	69	4	3	21	1.23
1563904--1563948	15	2.9	16	86	6	65	80	4	2	13	0.97
1564595--1564641	25	1.9	24	91	4	76	27	23	19	29	1.98
1564018--1568580	875	5.2	864	84	4	5508	25	24	24	25	2.00
1567220--1567272	26	2.0	26	88	0	79	32	26	15	26	1.95
1569469--1569521	26	2.0	26	92	0	88	28	24	18	28	1.98
1571059--1571111	26	2.0	26	96	0	97	32	26	15	26	1.95
1570897--1571320	185	2.3	185	91	0	679	24	28	25	21	1.99
1571244--1571296	26	2.0	26	92	0	88	28	24	18	28	1.98
1572276--1573608	710	1.9	707	88	2	2048	27	22	22	26	1.99
1573721--1573773	26	2.0	26	92	0	88	26	28	18	26	1.98
1573559--1573960	185	2.2	185	88	0	599	22	27	26	23	1.99
1573906--1573958	26	2.0	26	96	0	97	26	24	20	28	1.99
1574623--1575004	159	2.4	159	85	3	475	19	27	29	23	1.98
1574961--1586789	899	13.5	897	82	7	12960	25	24	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1576726--1576778	26	2.0	26	96	0	97	24	26	22	26	2.00
1578482--1586789	882	9.5	880	82	7	8944	25	24	24	26	2.00
1581064--1581116	26	2.0	26	100	0	106	26	26	20	26	1.99
1581944--1582022	26	3.0	26	90	0	131	25	24	21	29	1.99
1582844--1582893	26	1.9	26	100	0	100	26	26	20	28	1.99
1583703--1583755	26	2.0	26	88	0	79	28	22	20	28	1.99
1586387--1587181	403	2.0	402	89	3	1213	24	22	25	28	1.99
1587604--1587656	26	2.0	26	92	0	88	26	26	18	28	1.98
1586792--1590962	875	4.8	873	85	5	5147	26	24	23	26	2.00
1592631--1592683	26	2.0	26	100	0	106	26	22	20	30	1.98
1591756--1594713	885	3.3	893	84	5	3905	25	24	24	25	2.00
1593525--1593577	26	2.0	26	88	0	79	30	20	20	28	1.98
1594410--1594462	26	2.0	26	92	0	88	30	24	18	26	1.98
1594913--1594965	26	2.0	26	96	0	97	28	26	18	26	1.98
1594227--1595216	503	2.0	503	84	4	1309	20	26	27	24	1.99
1596732--1596784	26	2.0	26	92	0	88	26	22	20	30	1.98
1598143--1598220	26	3.0	26	92	0	129	26	21	21	29	1.99
1599771--1599823	26	2.0	26	92	7	90	28	28	16	26	1.97
1599609--1600010	185	2.2	185	86	0	552	23	26	26	23	2.00
1599956--1600008	26	2.0	26	96	0	97	26	24	20	28	1.99
1600670--1601053	159	2.4	159	83	3	443	21	27	27	23	1.99
1600826--1606896	898	6.9	881	84	6	7043	25	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1612762--1612814	26	2.0	26	96	0	97	28	26	18	26	1.98
1612788--1623917	875	12.7	873	83	6	11989	26	24	23	25	2.00
1615410--1615460	26	2.0	26	92	0	84	29	27	13	29	1.94
1617127--1617179	26	2.0	26	100	0	106	26	26	20	26	1.99
1618007--1618085	26	3.0	26	88	0	122	29	26	17	26	1.98
1619749--1619801	26	2.0	26	96	0	97	26	24	22	26	2.00
1626492--1626545	26	2.1	26	86	6	74	27	24	22	25	2.00
1629019--1629071	26	2.0	26	96	0	97	28	26	18	26	1.98
1631077--1631129	26	2.0	26	88	0	79	28	26	18	26	1.98
1634382--1634756	159	2.4	159	85	1	475	18	28	29	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93