genome.fa.s190.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  42  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5215112--5215182	33	2.2	33	92	0	115	38	22	14	25	1.92
5216217--5216317	18	6.0	16	78	8	87	11	11	1	74	1.16
5216217--5216317	8	12.0	8	75	14	87	11	11	1	74	1.16
5219011--5219067	28	2.0	28	96	0	105	33	12	17	36	1.87
5226016--5226897	439	2.0	439	97	0	1674	33	12	18	36	1.88
5228730--5228777	24	2.0	24	84	8	62	58	6	27	8	1.51
5232872--5232904	16	2.1	16	94	0	57	12	6	21	60	1.53
5235737--5236050	151	2.1	149	88	3	452	29	16	17	36	1.92
5237671--5237723	28	1.9	28	85	11	74	49	5	3	41	1.44
5239501--5239553	26	2.0	27	88	7	81	54	1	7	35	1.40
5239501--5239552	14	3.9	13	78	12	52	55	1	7	34	1.39
5243703--5243806	6	16.7	6	72	12	68	22	1	2	73	1.07
5243705--5243800	19	4.8	20	77	16	85	22	2	2	72	1.05
5243723--5243797	34	2.4	30	81	16	91	26	2	1	69	1.10
5244566--5244591	3	8.7	3	100	0	52	30	0	0	69	0.89
5244587--5244614	12	2.3	12	100	0	56	10	0	21	67	1.20
5244741--5244971	117	2.0	116	81	10	274	45	8	12	33	1.72
5244731--5244971	60	4.1	58	75	10	229	46	7	12	32	1.70
5244887--5245036	74	2.0	75	83	5	187	48	7	12	32	1.68
5248725--5248772	19	2.5	19	72	0	51	72	14	6	6	1.24
5249142--5249255	9	12.8	9	78	16	105	78	0	14	7	1.01
5249157--5249250	7	13.1	7	70	17	52	79	1	13	5	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5249142--5249255	19	6.4	19	77	17	111	78	0	14	7	1.01
5249142--5249255	10	11.7	10	81	10	112	78	0	14	7	1.01
5250979--5251251	42	6.5	42	81	4	248	28	12	18	40	1.87
5251048--5251251	83	2.5	82	86	5	268	29	13	18	38	1.89
5251049--5251306	42	6.2	40	78	11	184	27	13	18	39	1.89
5251199--5251495	44	6.8	44	80	4	280	23	13	21	41	1.88
5251234--5251495	132	2.0	133	84	2	348	23	12	20	42	1.87
5251676--5251751	13	5.7	13	76	19	59	23	2	0	73	0.95
5251719--5251763	18	2.5	18	89	7	65	31	6	0	62	1.21
5251678--5251741	7	9.3	7	79	16	55	21	3	0	75	0.95
5251707--5251769	23	2.7	23	84	15	78	28	4	0	66	1.12
5251720--5251762	12	3.8	11	82	11	52	32	6	0	60	1.23
5252677--5252916	59	4.1	57	72	12	191	45	6	14	34	1.70
5268826--5268866	21	2.0	21	85	9	57	31	7	0	60	1.24
5283766--5284071	42	7.3	42	83	4	361	27	14	19	39	1.90
5283766--5284060	126	2.4	124	87	3	421	26	13	20	39	1.89
5284039--5284140	39	2.5	43	83	10	117	27	17	17	37	1.93
5284375--5284493	17	6.6	17	70	20	73	26	4	2	67	1.22
5284367--5284502	33	4.2	33	71	20	101	24	5	2	68	1.21
5284474--5284516	17	2.5	17	80	3	59	25	6	0	67	1.15
5284490--5284528	20	1.9	21	85	15	55	20	7	2	69	1.26
5284492--5284549	24	2.5	23	76	15	57	20	6	3	68	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5285386--5285455	5	13.2	5	77	19	63	18	2	0	78	0.87
5285380--5285440	6	10.5	6	76	16	58	16	3	0	80	0.84
5285410--5285449	18	2.2	19	86	13	57	20	2	0	77	0.88
5285426--5285464	21	1.9	21	84	5	53	25	2	0	71	0.98
5285479--5285745	58	4.6	58	91	3	414	42	7	13	35	1.74
5289390--5289416	2	13.5	2	100	0	54	51	0	0	48	1.00
5298695--5298743	23	2.1	24	82	17	59	40	0	6	53	1.26
5298727--5298783	29	2.0	27	83	6	69	52	1	1	43	1.21
5299078--5299117	21	1.9	21	85	10	55	32	7	0	60	1.25
5300566--5300617	21	2.5	21	87	6	70	61	9	0	28	1.27
5301483--5301536	19	2.7	19	81	13	65	37	14	7	40	1.74
5301547--5301576	6	5.0	6	91	0	51	16	3	0	80	0.85
5302683--5302914	128	1.8	128	90	1	376	37	11	14	37	1.82
5302713--5302912	64	3.1	63	68	16	167	37	10	14	38	1.81
5302683--5302944	128	2.1	124	86	5	357	38	12	13	36	1.82
5304220--5304295	11	6.5	11	72	15	55	21	3	2	72	1.13
5304225--5304358	47	2.8	47	78	13	112	26	4	2	66	1.22
5305333--5305426	15	6.2	15	74	14	70	23	1	2	73	1.01
5305380--5305427	11	4.4	11	78	19	55	16	2	0	81	0.79
5305445--5305781	59	5.7	57	81	8	363	44	7	12	35	1.70
5306787--5307009	45	5.0	45	77	3	180	21	28	31	17	1.97
5307012--5307036	13	1.9	13	100	0	50	24	36	16	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5310232--5310264	14	2.5	13	95	5	57	90	3	6	0	0.52
5310636--5310681	10	4.5	10	94	5	83	82	0	8	8	0.84
5310635--5310687	21	2.7	19	86	13	81	79	0	11	9	0.94
5311214--5311257	22	2.0	22	82	8	54	38	6	25	29	1.81
5311414--5311600	63	3.0	63	79	4	216	34	10	24	30	1.89
5311937--5312023	21	3.9	21	79	10	75	37	9	16	36	1.80
5312153--5312191	20	2.0	20	89	0	60	30	12	23	33	1.92
5312469--5312706	41	5.8	41	82	9	238	23	15	16	44	1.85
5312751--5312786	18	1.9	19	88	5	56	86	0	5	8	0.72
5312988--5313032	23	1.9	24	86	4	65	24	0	4	71	1.05
5313421--5313478	31	1.9	30	89	3	89	18	8	20	51	1.72
5316122--5316152	15	2.1	15	93	0	53	16	6	48	29	1.70
5318916--5318981	6	11.0	6	84	11	75	1	0	16	81	0.76
5319170--5319257	35	2.5	35	92	0	140	56	12	15	14	1.67
5319922--5320137	50	4.3	50	81	4	222	36	16	14	32	1.89
5323738--5323780	21	2.0	21	86	0	59	51	4	2	41	1.35
5323815--5323870	8	7.0	8	89	0	76	85	3	3	7	0.81
5325310--5325471	16	10.2	16	73	15	122	48	33	1	16	1.55
5325436--5325543	51	2.1	50	84	6	137	50	35	0	14	1.44
5325480--5325513	14	2.3	15	90	5	52	52	44	0	2	1.16
5325315--5325542	16	15.5	14	68	21	78	47	34	0	16	1.53
5329739--5329768	9	3.3	9	95	0	51	90	6	0	3	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5329730--5329768	17	2.3	18	82	13	55	87	7	0	5	0.68
5331474--5331568	40	2.3	40	82	5	111	35	20	11	32	1.88
5331699--5331889	62	3.1	62	60	24	141	34	15	16	33	1.90
5331635--5331967	122	2.7	122	96	0	596	34	14	15	35	1.88
5331944--5332293	109	3.2	109	88	1	486	24	21	17	37	1.94
5332251--5332315	23	2.9	22	81	4	85	26	23	23	27	2.00
5332143--5332402	132	2.0	132	88	3	389	25	21	16	35	1.95
5332168--5332622	219	2.1	220	86	0	624	23	19	18	38	1.93
5332298--5332489	87	2.2	87	86	0	258	23	18	17	40	1.91
5332467--5332534	23	3.0	23	91	2	102	26	25	20	27	1.99
5332600--5332667	22	3.0	24	83	10	90	23	17	23	35	1.95
5332600--5332667	23	3.0	23	82	6	68	23	17	23	35	1.95
5332732--5332798	23	3.0	23	86	2	82	28	26	17	26	1.98
5332387--5333039	132	5.0	130	83	3	770	22	19	19	38	1.94
5332870--5332922	22	2.4	22	90	0	79	26	24	18	30	1.98
5332892--5333121	110	2.1	110	85	1	309	21	19	18	40	1.91
5333024--5333207	88	2.1	88	86	3	255	22	18	17	41	1.90
5333192--5333259	23	3.0	23	79	10	77	25	20	22	32	1.98
5333325--5333392	23	3.0	23	100	0	136	22	26	26	25	2.00
5333112--5333636	133	4.0	132	84	2	604	23	21	18	36	1.95
5333483--5333708	110	2.1	109	84	2	292	25	20	15	38	1.92
5334975--5335026	17	3.1	17	76	17	56	21	0	3	75	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5334960--5335026	19	3.8	18	72	22	61	19	0	2	77	0.89
5335137--5335174	3	12.7	3	100	0	76	31	0	0	68	0.90
5335438--5335539	33	3.1	32	82	5	123	50	33	0	16	1.46
5335428--5335529	49	2.1	49	83	7	127	50	31	0	17	1.53
5335428--5335607	16	11.2	16	73	12	129	48	31	1	18	1.55
5342858--5342929	34	2.1	34	94	0	126	38	19	5	36	1.75
5344724--5344777	3	18.0	3	84	0	54	31	5	3	59	1.38
5348047--5348595	303	1.8	304	83	2	744	34	14	13	37	1.85
5352061--5352277	80	2.8	79	82	6	232	45	23	7	24	1.78
5362126--5362498	134	2.8	134	80	3	421	38	20	13	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93