genome.fa.s190.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  17  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1812339--1812681	129	2.7	124	89	5	494	35	23	16	23	1.95
1812339--1812690	124	2.8	124	83	10	405	36	23	16	23	1.94
1813708--1813774	9	7.6	9	81	8	84	11	13	0	74	1.07
1813889--1813916	9	3.1	9	100	0	56	32	35	0	32	1.58
1823511--1823569	31	1.9	31	93	6	102	74	5	8	11	1.20
1823551--1823633	43	2.0	42	81	11	98	69	6	3	20	1.25
1823626--1823670	20	2.4	18	81	7	54	64	2	2	31	1.18
1823646--1823703	30	1.9	31	85	3	82	72	5	1	20	1.13
1825712--1825764	26	2.0	26	88	0	79	30	20	16	32	1.95
1826287--1826320	17	2.0	17	100	0	68	35	11	23	29	1.90
1829369--1829417	25	1.9	26	95	4	91	24	24	20	30	1.98
1829538--1829586	22	2.2	22	96	0	89	16	18	38	26	1.91
1831120--1831172	26	2.0	26	92	0	88	26	26	20	26	1.99
1832886--1832935	26	1.9	26	95	0	91	24	26	20	30	1.98
1826939--1837220	874	11.7	872	83	5	11633	25	24	24	25	2.00
1839083--1839117	9	3.8	9	85	7	52	77	0	11	11	1.00
1840048--1840275	113	2.0	113	99	0	447	29	20	15	34	1.93
1840249--1840422	42	4.1	41	89	5	251	22	16	25	35	1.95
1840431--1840478	11	4.7	10	77	12	53	83	12	2	2	0.83
1840634--1840672	16	2.5	15	87	8	51	15	0	5	79	0.90
1840679--1840927	4	63.2	4	68	20	61	25	2	4	67	1.20
1840684--1840829	41	3.7	39	71	18	104	28	1	4	65	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1840754--1840820	26	2.6	26	84	9	84	32	0	2	64	1.09
1840804--1840914	43	2.6	43	76	20	106	24	2	3	69	1.18
1840857--1840942	29	3.2	26	75	16	84	19	2	3	74	1.07
1841777--1841822	11	4.2	11	85	0	65	13	0	4	82	0.81
1841781--1841929	14	9.7	15	67	23	55	16	4	4	74	1.14
1841853--1841960	5	22.6	5	76	17	97	15	3	1	78	0.97
1841853--1841960	18	5.8	17	77	18	99	15	3	1	78	0.97
1841853--1841961	30	3.7	30	77	16	113	15	4	1	77	1.01
1841976--1842499	59	8.7	60	85	7	674	45	8	13	33	1.73
1841975--1842499	122	4.4	121	90	4	773	45	8	13	32	1.73
1841977--1842499	241	2.2	240	91	3	838	45	8	13	33	1.73
1843188--1843240	26	2.0	26	92	0	88	28	16	26	28	1.97
1846986--1847038	26	2.0	26	88	0	79	26	16	24	32	1.97
1847171--1847223	26	2.0	26	96	0	97	28	20	24	26	1.99
1846964--1847382	185	2.3	185	85	1	536	22	26	27	22	1.99
1848056--1848105	26	1.9	26	87	0	73	30	18	24	28	1.97
1848241--1848293	26	2.0	26	92	0	88	28	18	24	28	1.98
1848045--1848445	185	2.2	185	88	1	572	24	28	26	19	1.99
1849126--1849177	26	2.0	26	92	0	86	28	17	25	28	1.97
1851268--1851318	26	2.0	26	96	0	93	27	13	29	29	1.94
1852169--1852221	26	2.0	26	92	0	88	30	16	22	30	1.96
1850390--1854371	902	4.4	900	85	3	5136	26	23	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1853953--1854003	26	2.0	26	96	0	93	27	17	25	29	1.98
1857496--1857542	24	2.0	24	95	0	85	29	19	12	38	1.89
1858676--1859076	59	6.7	58	80	8	425	33	12	8	44	1.74
1859090--1859194	5	21.6	5	75	18	89	80	1	3	14	0.95
1859090--1859194	18	5.7	18	79	14	108	80	1	3	14	0.95
1859734--1859771	19	2.0	19	89	0	58	42	23	7	26	1.81
1860135--1860217	43	2.0	42	81	15	100	69	4	3	21	1.22
1860338--1860378	15	2.7	15	85	11	57	80	4	2	12	0.97
1861025--1861077	26	2.0	26	100	0	106	26	26	20	26	1.99
1861051--1863435	874	2.7	871	88	1	3537	26	23	23	26	2.00
1866198--1866250	26	2.0	26	92	7	90	30	24	18	26	1.98
1867098--1867150	26	2.0	26	96	0	97	26	24	20	28	1.99
1868377--1868793	185	2.3	185	88	1	595	22	28	26	22	1.99
1868721--1868773	26	2.0	26	96	0	97	30	24	16	28	1.97
1869434--1869821	159	2.4	159	81	2	429	21	29	26	22	1.99
1870650--1870702	26	2.0	26	92	0	88	28	24	18	28	1.98
1871542--1871594	26	2.0	26	92	0	88	26	22	20	30	1.98
1869772--1879042	898	10.4	890	85	6	10086	25	23	23	26	2.00
1873285--1873337	26	2.0	26	92	0	88	30	26	16	26	1.97
1875082--1875134	26	2.0	26	92	0	88	30	26	16	26	1.97
1877731--1877781	26	2.0	26	96	0	93	31	27	13	27	1.94
1879869--1879920	26	2.0	26	100	0	104	26	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1880753--1880805	26	2.0	26	92	0	88	28	24	18	28	1.98
1880594--1880999	185	2.2	185	85	3	539	20	26	29	24	1.99
1881821--1881873	26	2.0	26	92	0	88	24	24	22	28	2.00
1881662--1882060	185	2.2	184	85	1	530	22	27	26	23	1.99
1882888--1882940	26	2.0	26	96	0	97	26	28	20	24	1.99
1883792--1883844	26	2.0	26	85	7	72	28	24	18	28	1.98
1881847--1885824	904	4.5	897	86	4	5366	24	24	25	26	2.00
1886593--1886630	19	2.0	19	89	0	58	36	23	13	26	1.91
1888775--1894033	866	6.0	866	87	3	6727	26	24	23	25	2.00
1893118--1893170	26	2.0	26	88	0	79	28	24	16	30	1.97
1894007--1894059	26	2.0	26	88	0	79	30	28	16	24	1.97
1892259--1894192	889	2.2	889	87	1	2793	25	23	24	26	2.00
1897549--1897594	24	1.9	24	100	0	92	15	13	43	28	1.83
1899135--1899185	26	2.0	26	100	0	102	27	25	19	27	1.99
1897594--1902109	857	5.2	850	79	10	3814	25	23	23	26	2.00
1901861--1902383	274	1.9	275	88	1	791	24	22	25	27	2.00
1902143--1907917	876	6.6	871	85	4	7470	26	23	23	26	2.00
1914716--1914768	26	2.0	26	88	0	79	30	20	20	28	1.98
1913113--1917458	909	4.9	875	84	6	5517	26	24	24	25	2.00
1918126--1918178	26	2.0	26	88	0	79	28	20	24	26	1.99
1916666--1918250	743	2.1	735	82	6	2084	26	23	24	26	2.00
1919909--1919960	25	2.0	26	88	3	79	28	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1917455--1922308	903	5.4	898	85	3	6228	26	23	24	26	2.00
1920807--1920859	26	2.0	26	88	0	79	22	20	28	28	1.99
1921700--1921752	26	2.0	26	88	0	79	32	20	24	22	1.98
1923852--1924583	374	2.0	373	86	3	1035	29	24	21	23	1.99
1924607--1924659	26	2.0	26	96	0	97	26	18	26	28	1.98
1925505--1925557	26	2.0	26	100	0	106	26	20	26	26	1.99
1926362--1926414	26	2.0	26	92	0	88	26	18	24	30	1.98
1926857--1926945	5	17.6	5	76	17	78	15	3	2	78	0.98
1926849--1926935	22	4.1	22	77	8	90	14	5	2	77	1.06
1926858--1926945	12	6.9	13	71	21	53	15	3	2	78	0.99
1926962--1927302	59	5.7	60	87	4	467	44	8	14	32	1.76
1926962--1927302	119	2.8	119	94	2	569	44	8	14	32	1.76
1935516--1935566	26	2.0	26	96	0	93	27	19	23	29	1.98
1936413--1936463	26	2.0	26	96	0	93	27	17	27	27	1.98
1937304--1937356	26	2.0	26	92	0	88	28	18	24	28	1.98
1939986--1940036	26	2.0	26	96	0	93	25	19	25	29	1.99
1935091--1940894	900	6.5	899	86	2	7716	25	24	23	25	2.00
1941591--1941639	25	1.9	26	95	4	91	32	20	22	24	1.98
1942475--1942523	26	1.9	25	91	4	80	30	20	24	24	1.98
1943361--1943413	26	2.0	26	88	0	79	28	20	24	26	1.99
1940874--1949480	878	9.7	888	84	5	10094	26	23	24	25	2.00
1944246--1944298	26	2.0	26	89	7	81	30	18	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1945136--1949611	901	5.0	896	84	5	5492	25	24	24	25	2.00
1949565--1956297	882	7.7	866	81	8	7326	25	23	24	25	2.00
1952936--1952988	26	2.0	26	92	0	88	28	22	22	26	1.99
1954624--1954676	26	2.0	26	96	0	97	28	20	24	26	1.99
1957127--1957179	26	2.0	26	96	0	97	28	20	26	24	1.99
1960793--1960845	26	2.0	26	92	0	88	26	18	26	28	1.98
1965173--1965224	26	2.0	26	88	0	77	34	17	21	26	1.95
1966937--1966987	26	2.0	26	96	0	93	29	15	27	27	1.96
1960175--1972555	875	14.0	890	82	7	13786	25	24	24	25	2.00
1968698--1968748	26	2.0	26	96	0	93	29	15	27	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93