genome.fa.s190.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  35  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3867223--3867327	51	2.0	52	81	5	124	22	15	18	43	1.87
3867109--3867434	87	3.7	86	75	12	311	23	12	17	46	1.82
3867622--3867659	7	5.4	7	87	12	60	84	0	0	15	0.63
3869078--3869187	49	2.2	49	79	6	123	58	6	10	24	1.55
3872345--3872441	50	2.0	48	91	4	158	27	9	21	41	1.84
3873221--3873268	17	2.7	17	87	6	60	12	6	6	75	1.19
3873546--3873599	24	2.2	26	75	18	62	22	7	3	66	1.33
3875843--3875881	18	2.2	18	90	0	60	38	10	23	28	1.87
3875935--3876165	19	12.2	19	81	9	247	16	0	41	41	1.51
3875912--3876140	76	3.0	74	79	12	241	14	0	41	42	1.52
3875951--3876155	57	3.6	57	88	3	272	15	0	42	41	1.47
3878370--3878629	49	5.2	49	74	11	206	39	13	16	31	1.86
3878366--3878629	101	2.6	99	77	6	262	39	12	15	31	1.86
3879064--3879121	7	8.6	7	76	12	50	1	17	0	81	0.78
3879040--3879122	41	1.9	41	83	9	103	1	21	1	75	0.93
3879069--3879121	22	2.5	20	82	14	63	1	18	0	79	0.83
3879191--3879229	7	5.7	7	81	6	53	0	12	2	84	0.72
3879192--3879247	13	4.3	13	84	8	62	0	8	8	82	0.86
3879200--3879242	21	2.1	20	86	4	59	0	6	9	83	0.80
3885455--3885487	16	2.1	16	100	0	66	39	0	18	42	1.50
3892235--3892303	28	2.5	27	80	15	70	43	17	4	34	1.69
3892343--3892375	16	2.1	16	100	0	66	42	18	0	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3894949--3895004	25	2.2	25	84	9	69	8	17	0	73	1.08
3895317--3895354	12	3.2	12	88	3	60	10	0	15	73	1.09
3899672--3899704	14	2.4	14	94	0	57	24	0	0	75	0.80
3900073--3900113	21	1.9	22	85	5	57	21	2	4	70	1.18
3902609--3902803	59	3.3	58	70	11	146	28	20	14	35	1.93
3902931--3902980	20	2.5	20	78	15	59	70	16	0	14	1.18
3902937--3902980	20	2.3	19	88	4	61	68	15	0	15	1.22
3908490--3908514	12	2.1	12	100	0	50	24	0	44	32	1.54
3908560--3908613	20	2.7	20	83	13	58	72	3	9	14	1.24
3913654--3913740	36	2.4	37	86	1	122	42	19	8	29	1.80
3913689--3913804	61	1.9	61	92	0	196	40	19	6	32	1.78
3916484--3916560	38	2.0	38	94	0	136	35	16	11	36	1.86
3921955--3922002	21	2.3	20	79	13	53	43	0	16	39	1.48
3927774--3927812	12	3.2	12	85	10	53	25	17	7	48	1.74
3927677--3927910	119	2.0	118	97	0	441	30	19	14	35	1.92
3929738--3929771	17	2.0	17	94	0	59	23	29	20	26	1.99
3930591--3930636	18	2.6	18	82	0	56	39	32	10	17	1.84
3930646--3930728	32	2.6	32	77	9	89	44	31	6	18	1.73
3930860--3930924	18	3.5	18	74	4	58	50	26	9	13	1.71
3931658--3931937	136	2.1	136	98	0	542	28	18	13	38	1.89
3935711--3935769	24	2.4	24	80	8	66	1	18	3	76	1.02
3938041--3938082	15	2.8	16	82	10	61	83	0	11	4	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3939392--3939495	34	3.2	32	76	12	104	35	17	15	31	1.91
3939392--3939663	33	8.2	32	74	9	163	35	19	16	28	1.93
3940521--3940632	8	14.0	8	77	11	81	68	1	2	26	1.12
3940521--3940588	23	3.1	21	83	6	82	73	2	1	22	1.05
3940569--3940635	18	3.7	18	75	20	52	64	1	2	31	1.18
3942163--3942199	19	2.0	20	89	10	60	67	2	5	24	1.25
3942616--3942770	77	2.0	77	92	1	258	43	19	7	29	1.78
3943807--3943848	3	14.0	3	100	0	84	33	0	0	66	0.92
3947924--3947967	20	2.3	20	81	11	58	34	4	0	61	1.16
3947924--3948028	8	12.6	9	79	11	52	27	4	0	67	1.10
3947982--3948050	16	4.3	15	79	17	68	21	2	0	75	0.93
3947987--3948033	24	1.9	25	86	4	69	23	2	0	74	0.93
3948773--3948811	21	2.0	21	85	10	55	25	20	12	41	1.88
3952406--3952439	16	2.1	17	88	5	52	50	5	0	44	1.26
3954350--3954396	25	1.9	25	83	12	62	55	2	4	38	1.31
3954614--3954664	3	17.0	3	100	0	102	33	0	0	66	0.92
3954661--3954707	20	2.3	20	85	10	60	51	17	6	25	1.69
3954937--3954979	6	7.0	6	81	5	50	0	20	0	79	0.74
3955133--3955185	15	3.6	14	78	16	63	1	15	1	81	0.87
3955114--3955213	49	2.0	49	85	11	134	3	16	1	80	0.90
3955122--3955212	45	2.0	44	85	10	123	2	15	1	81	0.85
3967897--3968079	90	2.0	90	89	0	276	31	18	17	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3978159--3978187	14	2.1	14	93	6	51	58	0	0	41	0.98
3978535--3978593	22	2.6	22	70	19	59	50	1	5	42	1.34
3978564--3978603	21	1.9	21	85	10	55	52	0	2	45	1.14
3982275--3982306	2	16.0	2	100	0	64	50	0	0	50	1.00
3982348--3982377	3	10.0	3	100	0	60	0	0	66	33	0.92
3984070--3984128	30	2.0	30	93	0	100	33	11	25	28	1.91
3986105--3986228	61	2.0	61	95	0	221	38	15	19	26	1.91
3989020--3989176	63	2.5	62	75	14	153	47	4	10	36	1.59
4000105--4000972	439	2.0	430	91	6	1430	36	12	10	40	1.76
4001646--4001675	3	10.0	3	100	0	60	33	0	0	66	0.92
4001720--4001747	3	9.3	3	100	0	56	64	0	0	35	0.94
4003615--4003887	137	2.0	137	99	0	537	16	32	8	41	1.79
4007573--4007640	31	2.2	31	86	0	91	13	10	29	47	1.75
4007610--4007654	19	2.4	19	84	0	63	20	13	24	42	1.87
4009806--4009866	27	2.3	27	82	0	77	32	0	0	67	0.91
4011280--4011323	17	2.4	18	85	7	54	75	0	11	13	1.06
4011278--4011323	18	2.5	19	82	13	60	73	0	13	13	1.09
4011415--4011458	19	2.4	19	84	3	54	68	2	20	9	1.28
4011781--4011860	40	2.0	40	95	0	142	62	12	13	11	1.55
4012531--4012589	22	2.7	22	84	10	84	20	15	27	37	1.92
4013686--4013731	19	2.5	19	82	10	60	10	23	0	65	1.24
4019160--4019186	7	3.9	7	100	0	54	88	0	11	0	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4019980--4020626	97	6.7	95	90	3	967	30	11	24	33	1.90
4019977--4020626	48	13.4	48	88	5	943	30	11	24	33	1.90
4019974--4020626	242	2.7	240	89	4	985	30	11	24	33	1.90
4020794--4020846	5	11.0	5	84	15	60	83	13	3	0	0.79
4020797--4020838	18	2.3	18	91	0	66	85	9	4	0	0.72
4021845--4021896	27	2.0	25	85	7	68	32	44	19	3	1.69
4021850--4021897	12	3.8	12	81	13	60	33	45	18	2	1.61
4022392--4022449	16	3.6	16	79	9	64	46	27	6	18	1.75
4024633--4024706	17	4.4	17	66	26	50	51	2	1	44	1.24
4025374--4025442	13	5.8	11	77	17	50	43	0	0	56	0.99
4025385--4025439	14	3.9	14	77	22	53	43	0	0	56	0.99
4025382--4025450	13	5.6	13	76	22	60	46	1	0	52	1.09
4035980--4036029	22	2.3	22	86	6	75	50	0	0	50	1.00
4036003--4036057	15	3.6	15	78	4	65	52	1	0	45	1.11
4036020--4036059	16	2.4	16	83	4	53	57	2	0	40	1.12
4035998--4036069	31	2.3	31	80	2	90	58	1	0	40	1.07
4038971--4039018	24	2.0	24	88	8	71	56	0	4	39	1.19
4039046--4039101	23	2.4	23	77	16	62	50	1	1	46	1.22
4041553--4041588	17	2.2	17	90	5	56	16	11	19	52	1.73
4043482--4043586	33	3.3	33	77	7	101	28	2	4	63	1.29
4043478--4043556	29	2.7	30	84	7	99	30	1	1	67	1.07
4046708--4046740	14	2.3	15	89	5	50	57	3	27	12	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4049352--4049403	27	1.9	27	84	7	70	75	3	1	19	1.06
4049347--4049405	16	3.6	16	75	8	57	77	3	1	16	0.98
4049346--4049420	16	4.7	15	74	11	51	80	2	4	13	0.97
4050404--4050461	26	2.2	26	84	6	73	31	24	17	27	1.97
4050768--4051473	89	7.9	89	80	2	533	45	14	20	18	1.85
4050780--4051478	178	3.9	176	78	4	609	45	14	21	18	1.85
4050780--4051478	267	2.6	266	80	1	783	45	14	21	18	1.85
4051800--4051943	41	3.5	41	89	0	216	32	22	13	31	1.92
4053326--4053383	29	2.0	29	100	0	116	34	10	13	41	1.79
4063109--4063150	15	2.6	16	81	11	50	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93