genome.fa.s190.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  13  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1313517--1313960	157	2.8	157	75	8	418	24	27	27	20	1.99
1313517--1313972	159	2.9	156	75	7	420	24	28	26	20	1.99
1314019--1314071	26	2.0	26	88	0	79	24	18	26	30	1.98
1314228--1314601	188	2.0	186	82	4	450	25	26	26	21	2.00
1314423--1314918	158	3.1	157	77	5	496	24	29	26	19	1.98
1314892--1314944	26	2.0	26	88	0	79	26	18	26	28	1.98
1315617--1315669	26	2.0	26	89	7	81	30	20	22	26	1.98
1315642--1316265	159	3.9	158	79	4	621	23	30	27	18	1.98
1315642--1316304	158	4.2	158	79	4	627	23	29	27	19	1.98
1316278--1316330	26	2.0	26	85	7	72	24	15	28	32	1.95
1316682--1317077	159	2.5	157	80	4	427	24	28	28	18	1.98
1322964--1323002	18	2.2	18	95	0	69	30	35	23	10	1.88
1324396--1324448	26	2.0	26	85	7	72	30	18	22	28	1.98
1324422--1324902	158	3.0	156	76	8	486	23	29	27	19	1.98
1324421--1324868	159	2.8	155	77	8	454	22	29	28	18	1.98
1325635--1325687	26	2.0	26	89	7	81	30	20	22	26	1.98
1326292--1326746	157	2.9	155	75	9	409	23	29	28	18	1.98
1326292--1326782	159	3.1	157	75	7	463	22	30	28	18	1.97
1326846--1327347	158	3.2	158	75	5	424	23	30	27	18	1.98
1327321--1327373	26	2.0	26	88	0	79	24	16	28	30	1.97
1328375--1328427	26	2.0	26	92	7	90	22	22	28	26	1.99
1328572--1328627	26	2.2	26	87	6	78	26	21	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1328756--1329063	159	1.9	158	81	5	363	24	32	26	16	1.96
1329798--1329850	26	2.0	26	89	7	81	30	20	22	26	1.98
1330138--1330190	26	2.0	26	92	0	88	26	20	28	24	1.99
1330637--1330689	26	2.0	26	85	7	72	28	18	24	28	1.98
1332385--1332437	26	2.0	26	92	0	88	28	28	18	24	1.98
1332540--1332913	158	2.4	160	80	4	409	18	27	29	24	1.98
1332777--1333352	197	2.9	196	83	3	672	22	26	27	23	1.99
1333083--1333134	26	2.0	26	88	7	79	28	25	17	28	1.97
1333279--1333330	26	2.0	26	88	0	77	28	26	21	23	1.99
1332863--1333362	196	2.5	196	86	3	657	23	25	27	23	2.00
1333388--1333837	158	2.8	158	75	7	446	18	28	29	22	1.98
1333949--1334001	26	2.0	26	88	0	79	28	26	18	26	1.98
1333975--1334339	159	2.3	158	76	7	371	19	24	31	24	1.98
1335177--1335226	26	1.9	26	95	0	91	26	24	20	30	1.98
1336165--1336215	26	2.0	26	92	0	84	31	29	13	25	1.94
1336191--1336693	159	3.2	160	75	7	434	19	27	29	23	1.98
1336669--1336717	26	1.9	25	88	12	73	24	24	20	30	1.98
1337889--1337939	26	2.0	25	88	3	75	31	21	17	29	1.96
1338611--1338663	26	2.0	26	89	7	81	26	28	20	24	1.99
1338671--1339299	159	4.0	157	78	5	532	19	26	30	22	1.98
1339272--1339324	26	2.0	26	89	7	81	30	20	16	32	1.95
1339484--1339533	26	1.9	26	92	8	84	28	24	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1340976--1341312	171	2.0	169	82	1	413	17	24	31	26	1.97
1340801--1341326	170	3.1	169	77	3	500	20	24	30	24	1.99
1341791--1341843	26	2.0	26	92	0	88	26	26	20	26	1.99
1342287--1342338	25	2.0	26	88	3	79	25	26	21	26	1.99
1342313--1342813	158	3.2	156	79	4	524	19	27	29	22	1.98
1342984--1343036	26	2.0	26	88	0	79	28	26	18	26	1.98
1342933--1343378	183	2.4	184	83	4	535	21	28	26	23	1.99
1343194--1344035	159	5.2	158	71	11	387	19	27	29	22	1.98
1343453--1344134	171	4.1	169	73	10	506	20	27	29	22	1.98
1344104--1344240	71	1.9	71	82	2	168	14	31	24	29	1.95
1344175--1344747	158	3.6	154	76	8	528	19	28	28	24	1.98
1345613--1345665	26	2.0	26	82	7	63	26	22	18	32	1.97
1345823--1345875	26	2.0	26	88	0	79	28	26	18	26	1.98
1346324--1346374	26	2.0	26	88	7	77	27	25	17	29	1.98
1348423--1348788	158	2.3	159	79	5	380	21	26	28	23	1.99
1349294--1349651	158	2.3	158	80	10	392	20	23	31	25	1.98
1349625--1349677	26	2.0	26	89	7	81	26	22	20	30	1.98
1350357--1350409	26	2.0	26	89	7	81	32	26	15	26	1.95
1350391--1350884	158	3.1	158	78	6	534	18	27	30	22	1.98
1350858--1350910	26	2.0	26	89	7	81	28	24	18	28	1.98
1351250--1351302	26	2.0	26	92	0	88	26	26	20	26	1.99
1358786--1358838	26	2.0	26	92	0	88	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358848--1359633	159	4.9	160	73	6	515	20	26	29	24	1.99
1358892--1359633	318	2.3	318	81	4	870	19	26	28	24	1.99
1359606--1359658	26	2.0	26	92	7	90	26	22	20	30	1.98
1361216--1361268	26	2.0	26	89	7	81	30	24	16	28	1.97
1361242--1361742	158	3.2	158	73	7	469	18	27	31	22	1.97
1361716--1361768	26	2.0	26	92	0	88	26	30	20	22	1.98
1361558--1361910	184	1.9	185	84	1	467	19	28	30	21	1.98
1361166--1362466	500	2.6	501	82	3	1522	19	26	30	23	1.98
1361742--1362234	158	3.1	158	76	3	497	19	26	30	24	1.98
1363097--1363149	26	2.0	26	92	7	90	26	24	20	28	1.99
1363810--1364310	159	3.2	156	75	9	469	18	26	30	23	1.98
1364641--1364690	26	1.9	26	88	8	75	26	22	20	32	1.98
1364095--1364892	354	2.3	354	82	2	958	20	24	30	24	1.99
1364701--1365129	171	2.5	171	85	2	542	18	25	33	22	1.96
1365188--1365239	26	2.0	26	88	3	79	28	28	19	23	1.98
1365321--1365714	158	2.5	158	79	6	413	17	25	31	24	1.97
1365687--1365739	26	2.0	26	85	7	72	30	22	18	28	1.98
1365895--1365947	26	2.0	26	88	0	79	28	26	18	26	1.98
1366238--1366290	26	2.0	26	89	7	81	26	22	22	28	1.99
1368724--1368774	26	2.0	26	96	0	93	29	15	17	37	1.91
1368907--1368959	26	2.0	26	88	0	79	26	28	18	26	1.98
1367121--1368924	882	2.1	874	81	5	2025	21	25	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1368566--1369144	184	3.2	182	80	4	610	22	24	27	25	2.00
1369091--1369143	26	2.0	26	85	7	72	28	20	18	32	1.97
1369326--1369357	12	2.7	12	95	0	55	12	34	18	34	1.89
1369834--1369886	26	2.0	26	85	0	70	30	26	16	26	1.97
1370172--1371084	355	2.5	355	82	3	934	20	25	28	24	1.99
1371033--1371397	158	2.3	158	78	3	392	20	27	27	23	1.99
1370932--1371396	159	2.9	158	75	3	466	20	27	28	23	1.99
1371370--1371422	26	2.0	26	89	7	81	28	20	20	30	1.98
1370989--1371935	514	1.8	513	86	2	1380	19	27	28	24	1.98
1371463--1371911	159	2.8	157	80	6	505	17	27	30	23	1.97
1371883--1371961	26	3.0	25	90	7	122	27	24	20	27	1.99
1372105--1372157	26	2.0	26	92	7	90	26	24	20	28	1.99
1372768--1373343	159	3.6	159	77	5	515	20	27	28	23	1.99
1373316--1373368	26	2.0	26	92	0	88	26	26	20	26	1.99
1373798--1373853	26	2.2	26	87	6	78	30	19	19	30	1.97
1374701--1374753	26	2.0	26	89	7	81	26	22	22	28	1.99
1375459--1375846	196	2.0	192	84	8	510	21	27	28	22	1.99
1374480--1376387	922	2.1	922	87	1	2761	21	25	27	25	1.99
1376614--1376668	22	2.5	22	93	0	92	20	29	34	16	1.94
1376614--1376668	11	5.0	11	82	8	76	20	29	34	16	1.94
1377249--1377299	26	2.0	26	92	0	84	29	23	19	27	1.98
1377275--1377764	159	3.1	157	75	6	472	18	26	30	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1377747--1377799	26	2.0	26	88	0	79	26	22	18	32	1.97
1377595--1377947	185	1.9	184	84	5	480	18	26	30	25	1.98
1377851--1378582	316	2.3	314	78	6	771	18	27	30	24	1.98
1378689--1378741	26	2.0	26	88	0	79	24	24	20	30	1.99
1379069--1379120	26	2.0	26	88	0	77	28	26	17	26	1.97
1379936--1379988	26	2.0	26	85	7	72	28	24	18	28	1.98
1381159--1381211	26	2.0	26	88	0	79	28	26	18	26	1.98
1381368--1381420	26	2.0	26	85	7	72	30	24	18	26	1.98
1382933--1382985	26	2.0	26	92	0	88	28	24	18	28	1.98
1383827--1383879	26	2.0	26	88	0	79	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93