genome.fa.s190.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15675301

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   

This is table  41  of  93  ( 11062 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5040131--5040262	65	2.0	65	86	0	183	44	7	3	44	1.47
5040609--5040637	14	2.0	15	93	6	51	62	10	0	27	1.28
5042506--5042546	21	2.0	20	90	4	64	34	2	36	26	1.70
5042496--5042552	30	1.9	30	92	0	96	36	3	31	28	1.74
5052818--5052941	52	2.4	52	86	1	196	41	10	8	38	1.71
5053038--5053227	3	64.7	3	73	12	144	59	3	2	34	1.27
5053405--5053544	55	2.5	55	77	3	147	37	16	22	22	1.93
5053816--5053952	60	2.3	60	82	2	168	35	13	29	21	1.92
5054163--5054322	86	1.9	86	89	2	250	32	15	22	30	1.94
5054297--5054410	17	6.6	17	73	12	63	35	14	21	28	1.93
5059217--5059341	49	2.6	49	83	7	150	40	12	12	36	1.79
5059498--5059555	25	2.3	25	85	5	73	75	3	8	12	1.14
5059504--5059567	18	3.5	18	84	2	83	75	3	10	10	1.17
5059499--5059562	25	2.7	24	72	13	60	75	3	9	12	1.16
5060805--5060855	23	2.3	23	79	3	59	31	11	13	43	1.80
5060939--5061042	3	35.0	3	75	5	95	59	4	2	32	1.33
5060977--5061018	16	2.5	17	84	7	50	50	11	4	33	1.60
5061317--5061346	12	2.5	12	100	0	60	40	26	16	16	1.90
5067052--5067172	61	2.0	61	90	0	188	50	13	8	28	1.70
5067399--5067448	17	2.8	18	81	9	57	66	2	4	28	1.21
5067420--5067479	30	2.0	30	84	12	79	65	0	6	28	1.18
5073677--5073733	29	2.1	26	83	9	69	50	0	3	45	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5073725--5073771	14	3.7	13	80	11	53	48	2	0	48	1.13
5074076--5074170	30	3.2	30	77	7	104	34	10	1	53	1.42
5074088--5074170	29	2.8	30	81	5	107	33	9	1	55	1.40
5074688--5074719	9	3.4	9	91	8	55	12	0	0	87	0.54
5074688--5074718	10	3.2	10	95	4	55	9	0	0	90	0.46
5076300--5076647	58	5.9	57	80	9	263	45	5	11	37	1.63
5076300--5076647	118	2.9	117	79	9	359	45	5	11	37	1.63
5076371--5076652	58	4.7	58	83	9	304	43	6	12	36	1.69
5077596--5077804	58	3.6	58	86	3	283	37	14	7	40	1.74
5077596--5077815	119	1.9	116	83	2	287	36	14	7	41	1.73
5077828--5077852	13	1.9	13	100	0	50	80	0	0	20	0.72
5078094--5078126	8	4.2	8	84	7	50	15	0	0	84	0.61
5078098--5078143	15	3.0	15	90	9	67	23	0	0	76	0.79
5078168--5078226	13	3.9	16	81	18	65	16	3	0	79	0.86
5078169--5078226	5	11.6	5	81	17	68	17	3	0	79	0.87
5078239--5078398	58	2.8	58	84	6	191	43	8	13	34	1.75
5082406--5082467	12	4.8	12	73	13	52	80	0	14	4	0.87
5083168--5083298	63	2.1	63	88	0	190	37	9	22	30	1.87
5084096--5084172	41	1.9	40	94	2	136	28	14	18	38	1.89
5084181--5084292	45	2.5	45	88	0	170	24	16	18	40	1.91
5084308--5084351	1	44.0	1	81	0	52	90	6	0	2	0.51
5084308--5084351	14	3.2	14	87	3	63	90	6	0	2	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5084305--5084351	19	2.6	18	90	6	76	89	8	0	2	0.57
5086219--5086259	16	2.4	18	84	15	52	43	2	2	51	1.28
5086254--5086640	57	6.6	58	83	6	408	42	5	12	38	1.67
5092116--5092158	12	3.4	12	83	6	50	44	2	0	53	1.13
5092480--5092562	30	2.8	30	87	1	123	36	8	1	54	1.39
5092587--5092637	15	3.5	15	76	10	52	50	0	1	47	1.12
5094938--5094964	12	2.2	12	100	0	54	51	0	7	40	1.30
5098477--5098689	82	2.6	81	78	5	223	23	8	29	38	1.85
5102287--5102315	14	2.1	14	93	6	51	31	6	13	48	1.69
5105326--5105381	22	2.5	22	79	0	67	37	17	17	26	1.93
5105364--5105414	22	2.2	23	79	10	59	45	11	11	31	1.77
5105370--5105415	22	2.1	22	87	0	65	41	15	10	32	1.82
5105665--5105735	22	3.3	21	70	5	61	32	15	9	42	1.80
5105665--5105759	45	2.2	44	84	7	122	32	16	9	41	1.81
5105682--5106065	22	17.4	22	68	16	82	31	19	10	38	1.86
5105733--5106091	22	16.4	22	69	12	96	31	19	11	37	1.87
5105685--5105824	67	2.1	67	84	10	180	32	17	9	40	1.81
5105733--5105912	43	4.1	43	77	12	154	32	17	9	40	1.81
5105943--5106044	44	2.3	44	82	1	123	33	20	9	36	1.86
5105875--5106066	22	8.8	22	76	4	106	31	21	11	34	1.90
5105963--5106087	44	2.8	44	82	7	130	32	21	11	35	1.89
5106840--5106882	20	2.1	21	83	12	54	51	18	13	16	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5107137--5107178	11	3.7	11	81	15	50	26	2	0	71	0.98
5110374--5110736	158	2.3	154	80	7	410	28	9	17	44	1.80
5111659--5111721	22	2.9	22	90	0	99	33	12	15	38	1.86
5111661--5111721	11	5.5	11	74	0	59	34	13	14	37	1.85
5112529--5112558	3	10.0	3	100	0	60	33	0	0	66	0.92
5114892--5114925	18	1.9	18	88	5	52	20	8	0	70	1.13
5117145--5117173	14	2.1	14	100	0	58	65	0	0	34	0.93
5117134--5117173	14	2.6	16	84	11	57	65	0	0	35	0.93
5118941--5118982	20	2.2	20	86	4	59	50	7	7	35	1.57
5131649--5131689	21	2.0	21	95	0	73	21	24	9	43	1.83
5136995--5137038	11	4.5	11	76	23	53	54	6	0	38	1.27
5136995--5137053	27	2.1	28	87	9	86	54	6	0	38	1.27
5137001--5137065	27	2.3	27	84	5	76	53	6	0	40	1.26
5137063--5137115	21	2.5	21	84	0	70	47	5	1	45	1.37
5137131--5137212	21	4.0	20	77	4	67	48	3	1	46	1.27
5137145--5137244	21	4.8	21	71	7	78	47	4	2	47	1.32
5137145--5137301	10	15.5	10	67	21	69	45	5	1	47	1.32
5137223--5137303	29	2.8	30	76	10	87	40	6	0	53	1.26
5137324--5137403	28	2.9	29	78	14	80	42	2	5	50	1.37
5137387--5137634	29	8.3	29	69	17	125	45	2	2	50	1.26
5137382--5137475	40	2.3	40	78	12	120	47	3	1	47	1.25
5137536--5137603	27	2.4	28	85	11	86	47	1	2	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5137565--5137705	72	2.0	70	81	5	167	40	0	3	55	1.22
5137637--5137743	29	3.7	29	79	10	112	40	1	2	55	1.25
5137637--5137745	28	3.8	27	80	11	103	41	1	2	54	1.25
5137760--5137814	14	3.8	15	75	20	55	47	1	0	50	1.11
5138163--5138256	49	1.9	49	86	0	134	34	12	19	34	1.89
5143588--5144022	49	8.9	48	82	7	489	43	12	13	31	1.80
5144568--5144608	17	2.6	16	85	11	57	21	21	0	56	1.43
5146081--5146135	21	2.6	21	94	0	92	16	29	21	32	1.95
5159358--5159406	3	15.7	3	81	12	55	26	2	2	69	1.10
5164110--5164150	21	2.0	21	95	0	73	51	0	2	46	1.14
5164116--5164194	33	2.4	32	79	8	86	54	2	1	41	1.22
5164204--5164243	19	2.1	19	95	0	71	27	0	2	70	1.01
5174160--5174220	25	2.5	24	84	10	70	54	0	4	40	1.22
5180000--5180054	24	2.3	24	87	0	83	30	20	7	41	1.79
5183721--5183811	45	2.0	45	80	4	103	45	1	2	51	1.20
5192504--5192532	3	9.7	3	100	0	58	31	0	0	68	0.89
5192860--5192888	8	3.6	8	100	0	58	0	27	0	72	0.85
5194148--5194201	14	3.9	14	79	13	58	42	9	20	27	1.82
5194866--5194909	23	2.0	22	86	13	63	9	11	2	77	1.08
5198972--5199159	98	1.9	95	86	3	259	37	11	9	41	1.73
5200461--5200498	17	2.1	19	85	9	53	10	13	18	57	1.63
5201098--5201145	19	2.6	18	81	12	53	54	14	4	27	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5201093--5201145	18	2.9	17	76	13	52	52	15	3	28	1.59
5204301--5204330	13	2.3	13	94	0	51	16	3	6	73	1.18
5208828--5208869	21	2.0	21	90	0	66	21	4	28	45	1.72
5209933--5209986	21	2.7	20	78	13	58	53	7	7	31	1.56
5209971--5210019	20	2.5	20	74	12	55	46	6	4	42	1.47
5210681--5210714	17	2.0	17	88	0	50	58	17	8	14	1.61
5214576--5214739	87	1.9	88	83	6	217	40	13	16	29	1.86
5214592--5214772	44	4.2	42	76	5	112	41	12	15	30	1.84
5214679--5214825	44	3.4	43	80	8	163	43	12	13	29	1.82
5214572--5214825	87	2.9	85	78	9	210	42	13	14	29	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93